{"as_of":"2026-08-18T13:24:00Z","caps":{"database_statements":6,"inbound":100,"outbound":100},"context_digest":"sha256:66a077bbebba8a12c0bd107139f47b12b96ac218a80e0cc1c00904bfe9c4efd7","coverage":[{"denominator":31,"lane":"reference_resolution","note":"Typed states for the displayed outbound observations.","records_observed":31,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-11T05:13:37.992758Z","state":"measured"},{"denominator":34,"lane":"standing_notices","note":"One-hop event checks from named stored sources.","records_observed":34,"source":"scholarly_work_events, retraction_status_cache","source_observed_at":"2026-08-18T06:34:40.430872+00:00","state":"measured"},{"denominator":3,"lane":"inbound_itemization","note":"Pith citing papers itemized under the disclosed page cap.","records_observed":3,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-03T02:57:47.932219Z","state":"measured"},{"denominator":1,"lane":"external_citation_measurements","note":"A source-named dated measurement, never combined with another source.","records_observed":0,"source":"arxiv_reference","source_observed_at":"2026-06-28T23:42:49.829070Z","state":"measured"}],"external_citation_measurements":[],"inbound":[{"citation":{"cited_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2412.17780","snapshot_observed_at":"2026-08-03T02:57:47.932219Z","title":"PepTune: De novo generation of ther- apeutic peptides with multi-objective-guided discrete diffusion","venue":null,"work_id":null,"year":2025},"citing_paper":{"arxiv_id":"2602.10163","last_updated":"2026-02-10T09:01:09Z","snapshot_observed_at":"2026-08-15T20:09:01.907363Z","submitted_at":"2026-02-10T09:01:09Z","title":"Beyond SMILES: Evaluating Agentic Systems for Drug Discovery","version":1},"reference_index":20,"source":"pdf_text","source_observed_at":"2026-08-03T02:57:47.932219Z"},"links":{"cited_paper":"/paper/2412.17780","citing_paper":"/paper/2602.10163"},"observation_digest":"sha256:0d81d7edfacdf972adee987bb4ec20b2a5984b713c8ca205d2ecd50e385af01d","observation_id":"63d6b676-2638-442a-a2c9-8f2658d714ba","resolution":{"observed_at":"2026-08-03T02:57:47.932219Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"cited_work":{"arxiv_id":"2412.17780","doi":null,"metadata_source":"arxiv_reference","pith_arxiv_id":"2412.17780","snapshot_observed_at":"2026-06-28T23:42:49.829070Z","title":"arXiv preprint arXiv:2412.17780 , year =","venue":null,"work_id":"7290c0bf-aecf-440b-82d7-9b9ca3b17578","year":null},"citing_paper":{"arxiv_id":"2606.00295","last_updated":"2026-05-29T19:26:53Z","snapshot_observed_at":"2026-07-06T23:41:01.066075Z","submitted_at":"2026-05-29T19:26:53Z","title":"Adaptive Order Policies for Masked Diffusion","version":1},"reference_index":80,"source":"arxiv_source","source_observed_at":"2026-06-28T23:33:40.937370Z"},"links":{"cited_paper":"/paper/2412.17780","citing_paper":"/paper/2606.00295"},"observation_digest":"sha256:31925d918f85283f2500a62384834a99710e3ed00975b179f804db2add6a3596","observation_id":"86c6df9e-932f-496e-b9a1-ecc3af5d7fff","resolution":{"observed_at":"2026-06-28T23:42:49.830262Z","resolver_source":"arxiv_id","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2412.17780","snapshot_observed_at":"2026-07-12T06:44:20.438683Z","title":"PepTune: De Novo Generation of Ther- apeutic Peptides with Multi-Objective-Guided Discrete Diffusion, December 2024","venue":null,"work_id":null,"year":2024},"citing_paper":{"arxiv_id":"2607.02834","last_updated":"2026-07-03T00:06:31Z","snapshot_observed_at":"2026-08-16T20:33:56.104879Z","submitted_at":"2026-07-03T00:06:31Z","title":"On the Design Space of Discrete Diffusion Online Adaptation for Molecular Optimization","version":1},"reference_index":63,"source":"pdf_text","source_observed_at":"2026-07-12T06:44:20.438683Z"},"links":{"cited_paper":"/paper/2412.17780","citing_paper":"/paper/2607.02834"},"observation_digest":"sha256:cdfa00a0079cad01f60b04371f2dc208ebb2dd460205837f80a0b054f0c199fe","observation_id":"b3429398-152b-45ec-80da-1db5e8c1f10b","resolution":{"observed_at":"2026-07-12T06:44:20.438683Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}}],"links":{"evidence":"/evidence","html":"/paper/2412.17780/citation-record","integrity":"/paper/2412.17780/integrity","json":"/paper/2412.17780/citation-record.json","paper":"/paper/2412.17780"},"outbound":[{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.025912Z","title":null,"venue":null,"work_id":"373c2747-1000-4a66-a27f-790d0c8047b2","year":2001},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.876721Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:293aef4a6e211da1e47ba10d70352d29f1b33e247dbce159111657a019e5cdf2","observation_id":"361d8eb6-194b-4663-8a63-ed77f4f7e4ff","resolution":{"observed_at":"2026-08-11T05:13:39.035878Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.264761Z","title":"H., Engler, J","venue":null,"work_id":"d6a871a8-1839-47e9-a73b-4cbe801a69c4","year":2004},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":3,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.733315Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:754185e4da3a8788a7757f22692262ad33407242ce0469ee1431bec8f616f0f1","observation_id":"db2d01f8-6799-4968-bc44-fa9f138fd530","resolution":{"observed_at":"2026-08-11T05:13:39.276790Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.920973Z","title":"Larger scores indicate stronger binding for our classifier","venue":null,"work_id":"4e3330a1-afa0-42fa-a29e-c36bfb0f7f18","year":2022},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":4,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.901334Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:79328de6fb014c402b7e705ea9d10d368c54de96e9972c12f3a48c4a8a9bad6f","observation_id":"7267d1b8-eacb-4bd5-9b02-e02ebb3ab764","resolution":{"observed_at":"2026-08-11T05:13:38.930403Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.998647Z","title":"Two-dimensional chemical structure of (A) PepTune-generated binder 1, (C) established T7 peptide, and (E) PepTune-generated TfR binder 2 and their Vina docking scores to TfR (↓)","venue":null,"work_id":"aec8e85b-f85f-4f7a-8fbd-f52f6b7e4aef","year":2003},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":6,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.884796Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:736aa2aa903d307de52dc78bd861bc536816bdd3ba558f639428a51c5877ab55","observation_id":"23953f62-4d8b-46c2-8ef3-7e00b9e61231","resolution":{"observed_at":"2026-08-11T05:13:39.008525Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.757902Z","title":null,"venue":null,"work_id":"08882754-249f-40f1-a6ea-d206e418ea0f","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":8,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.942674Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:922cf0c999c9ad529e72fdf44b93110946943b3b3e7ac5800699ced9d109871b","observation_id":"3a4d6fbe-a337-4752-bcfe-f1ca9335267a","resolution":{"observed_at":"2026-08-11T05:13:38.764754Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2104.09864","last_updated":"2023-11-08T13:36:32Z","snapshot_observed_at":"2026-08-17T06:56:20.644738Z","submitted_at":"2021-04-20T09:54:06Z","title":"RoFormer: Enhanced Transformer with Rotary Position Embedding","version":5},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2104.09864","snapshot_observed_at":"2026-08-11T05:13:37.794179Z","title":"Roformer: Enhanced transformer with rotary position embedding","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":10,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.794179Z"},"links":{"cited_paper":"/paper/2104.09864","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:be23ebf0efad7b0a71441c81c937f9bca1f688f0e1278469592724c58bff3d5d","observation_id":"70b182bf-4226-494e-be49-53dc928d408e","resolution":{"observed_at":"2026-08-11T05:13:37.794179Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.590344Z","title":"Protein PDB GFAP 6A9P TfR 3KAS GLP-1R 3C5T AMHR2 7L0J GLAST 5LM4 NCAM1 2HAZ RBX1 1LDJ G","venue":null,"work_id":"875dd1e6-22c7-4457-a9ed-09343b17e45b","year":2024},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":11,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.987202Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:238c50bca79f5a87aefb7b3e6bebd7ad1af90cb88fd9c322cdae00473bbd1d4f","observation_id":"ddccdccd-5c4f-4df9-bd5d-c335319b2b45","resolution":{"observed_at":"2026-08-11T05:13:38.600082Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.182817Z","title":"13 De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion Vinogradov, A","venue":null,"work_id":"2e936da0-172d-407d-8fee-0ba862341bb0","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":12,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.808894Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:ad93379be49898aff0cc7a09ba27792273ad384c62d71ad35d2b45803a152e89","observation_id":"fc683f00-e602-4576-ba75-9505bb63b600","resolution":{"observed_at":"2026-08-11T05:13:39.197951Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.152170Z","title":"A., and Riniker, S","venue":null,"work_id":"badb48b5-b86f-47c7-9e4a-7499ebd2bc52","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":13,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.814643Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:9418a28ce6071e2332328ad585de59086b45cb3e45688f241ed648a76464900e","observation_id":"64bfbbfc-51da-4aba-a6d8-84bd5efd4632","resolution":{"observed_at":"2026-08-11T05:13:39.165669Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":"2311.04419","doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.193993Z","title":"Pepland: a large-scale pre-trained peptide representation model for a compre- hensive landscape of both canonical and non-canonical amino acids","venue":null,"work_id":"4791d061-8a5c-4351-8a66-105af7905855","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":14,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.827067Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:cd56ab237426d9703d70860074d2990667419121ab2bbb8f477af4450f4cbf42","observation_id":"056914af-a6ee-4fbf-bf46-dcaad4d8d10b","resolution":{"observed_at":"2026-08-11T05:13:38.207274Z","resolver_source":"raw_fallback","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.098455Z","title":null,"venue":null,"work_id":"9fcfcd1c-e91a-43b6-930b-4e03d6938c1a","year":2017},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":15,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.840741Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:9425189dc329c37a53793389aa1592a9bcd45c6e8958855b3bb5142e68933800","observation_id":"2af1f7b4-04fc-43e8-b301-3db257b2c68c","resolution":{"observed_at":"2026-08-11T05:13:39.111224Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.950475Z","title":"(Bottom) Plots depicting the average predicted score for NCAM1 binding affinity, solubility, hemolysis, and non-fouling over iterations of MCTS","venue":null,"work_id":"b0eb5d52-4114-4202-8c08-6a4277a4166f","year":1996},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":19,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.893007Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:2218add0d85decde0ceb126c719a6aa1c775f4f164e4209ae013f7423415b073","observation_id":"53bb4dfc-035e-4d5d-8546-f6db81db98d3","resolution":{"observed_at":"2026-08-11T05:13:38.960929Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.889340Z","title":"( B) Plot of average predicted binding affinity score to TfR over iterations","venue":null,"work_id":"bf40ddb4-01fc-42be-9fee-9b500464b637","year":2024},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":21,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.908600Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:252fe4704b56f3f955d15105cd489b2ec93309f4c17a629fb3e55c53da4d7aaa","observation_id":"efcb2e05-eff0-44ca-9c6d-859d15f3b6b0","resolution":{"observed_at":"2026-08-11T05:13:38.898687Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.855901Z","title":null,"venue":null,"work_id":"8ac39a6f-69de-47bb-b72b-57f07c50fa5d","year":2021},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":22,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.917315Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:1c0ac1f8557e0966cce76493937d82302158801756ba4255cc3fc65c3719540a","observation_id":"5e63032e-1519-4a55-b2f0-679d43b9a410","resolution":{"observed_at":"2026-08-11T05:13:38.865582Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.824874Z","title":null,"venue":null,"work_id":"d12779e4-a4d5-4653-8e58-ad12dff75a94","year":2010},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":23,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.925095Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:dc98d6e3895622527bcfb0fd630c30707d321659573c489b25f1fe78c9eae16f","observation_id":"a8d8b9d0-07bc-4e82-b2c7-989277e4366d","resolution":{"observed_at":"2026-08-11T05:13:38.834952Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.797068Z","title":"Model Train Loss ( ↓) Train PPL ( ↓) Val Loss ( ↓) Val PPL ( ↓) PepMDLM 0.832 2.460 0.880 2.277 D.3","venue":null,"work_id":"0cb85ed2-bb97-4a55-bf44-8d2e774e3784","year":2024},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":24,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.933741Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:4acc5bc50250c2af597070761f0824ce81c7ae645e0d20a915fd1bf282c63016","observation_id":"4d134236-6c90-4a3e-909a-47e5ed7d6aec","resolution":{"observed_at":"2026-08-11T05:13:38.807151Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.723373Z","title":"Plot of true permeability (logP) on the x-axis and predicted permeability on the y-axis for the (A) validation set and (B) training set","venue":null,"work_id":"dc28d62c-e8ce-444e-a4ef-e04b9d6c2e8e","year":2023},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":26,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.951063Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:d17ab94e667c555c0245a576b783979856807f2947d8188c82e676906dc7eae1","observation_id":"e6f7c609-5a40-475d-a7d3-1ef971281fff","resolution":{"observed_at":"2026-08-11T05:13:38.735454Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.697463Z","title":null,"venue":null,"work_id":"f837a0a6-11b9-483b-acfe-e116cd560ed7","year":2012},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":27,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.959526Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:ae0ceec32ead80e72ad936cfa7e73b4e25eac8c7c2ec23a993d897218c89d675","observation_id":"98e8981f-0d36-45c2-b994-01920cfec6bf","resolution":{"observed_at":"2026-08-11T05:13:38.705230Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.548537Z","title":null,"venue":null,"work_id":"b03a7898-3f8b-4226-8957-bbfd2caf7506","year":2024},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":31,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.992758Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:a95050d1c5fc4b5313625c67c416981914ff3957e530c1701127fe3428eab961","observation_id":"5580cd3a-5ac4-4b4a-b415-d3e96bff48ad","resolution":{"observed_at":"2026-08-11T05:13:38.557262Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.062384Z","title":null,"venue":null,"work_id":"bdc1108d-6bc4-4283-9460-0e1454b6d680","year":2001},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":200,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.857636Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:02f3bcd10c681dcf1357fab98e19be45746cccc030d6daa423e35fa397334a6d","observation_id":"ff49f5c7-868a-46e6-b074-bf6fd451ab1e","resolution":{"observed_at":"2026-08-11T05:13:39.075757Z","resolver_source":"raw_fallback","status":"unresolved"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:37.770101Z","title":"Z., Bezemek, Z., Patel, S., Rector-Brooks, J., Yao, S., Tong, A., and Chatterjee, P","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2003,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.770101Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:e1fb25678fd1f5b919ae5aee4bc5632f21b4fd01088986e9e7ccbad047e36edb","observation_id":"ee286819-e2a0-4e56-b5c7-c9aceea9ef00","resolution":{"observed_at":"2026-08-11T05:13:37.770101Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.619219Z","title":"The final results were visualized in PyMol (Schrödinger, LLC,","venue":null,"work_id":"e4101dd0-dbd3-48d5-a5ee-47dbe4aef6dd","year":2021},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2009,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.975558Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:c53d68678e59c5aa499ed2928d11234711312d087d61a2316726f4f4007fc103","observation_id":"36423c7f-151c-4d47-b44c-093634baa366","resolution":{"observed_at":"2026-08-11T05:13:38.626807Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.645735Z","title":"The tool is freely available on HuggingFace: https://huggingface.co/spaces/ChatterjeeLab/SMILES2PEPTIDE","venue":null,"work_id":"ffe594af-cae7-4640-ab02-928b1101a194","year":2020},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2012,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.966134Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:548d6c4169dfc880e238e2405a54056c37dbffca1f03c1d5b65149cbceb054a7","observation_id":"b85ca8fd-01bc-4d1a-8c6d-dc7079349fe7","resolution":{"observed_at":"2026-08-11T05:13:38.651730Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2310.03842","last_updated":"2024-08-11T20:36:51Z","snapshot_observed_at":"2026-08-18T08:17:41.576563Z","submitted_at":"2023-10-05T18:59:51Z","title":"PepMLM: Target Sequence-Conditioned Generation of Therapeutic Peptide Binders via Span Masked Language Modeling","version":3},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2310.03842","snapshot_observed_at":"2026-08-11T05:13:37.716221Z","title":null,"venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2016,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.716221Z"},"links":{"cited_paper":"/paper/2310.03842","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:8c73d93f13c65ca4d8ac6bed90f346936dee5dbb1764c46a7abc067161e7d201","observation_id":"2a0c59e4-1694-4524-8558-693770fe70a0","resolution":{"observed_at":"2026-08-11T05:13:37.716221Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1101/2024.06.20.599739","metadata_source":"doi_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.045870Z","title":"N., and Bryant, P","venue":null,"work_id":"71203fd1-a196-4a43-bed8-3ae49b798664","year":2024},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2018,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.746221Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:448d403b748583876d455b2d7f4ce11ead6299f744b1c129607f34e08bb9ed5b","observation_id":"d4da8b4c-5717-48e0-8b69-183116b425e2","resolution":{"observed_at":"2026-08-11T05:13:38.055583Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2410.08134","last_updated":"2024-10-10T17:18:30Z","snapshot_observed_at":"2026-08-18T03:05:49.342343Z","submitted_at":"2024-10-10T17:18:30Z","title":"Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2410.08134","snapshot_observed_at":"2026-08-11T05:13:37.777395Z","title":"RDKit: Open-source cheminformatics","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2020,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.777395Z"},"links":{"cited_paper":"/paper/2410.08134","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:a47114a1b4bc1ceb5240e30166ee7777d78988919f88c53bd9a0167bfc4aded4","observation_id":"3d5d7cbe-5c90-4661-97a8-00cbc9d09c14","resolution":{"observed_at":"2026-08-11T05:13:37.777395Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":{"arxiv_id":"2503.17361","last_updated":"2025-03-21T17:59:43Z","snapshot_observed_at":"2026-08-18T08:17:42.529238Z","submitted_at":"2025-03-21T17:59:43Z","title":"Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation","version":1},"cited_work":{"arxiv_id":"2503.17361","doi":null,"metadata_source":"pith","pith_arxiv_id":"2503.17361","snapshot_observed_at":"2026-08-11T05:13:38.251815Z","title":"Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation","venue":"cs.LG","work_id":"d4c97afd-60a9-4410-8ef2-6c6dddfad4ce","year":2025},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2021,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.800561Z"},"links":{"cited_paper":"/paper/2503.17361","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:92422db1d438b1854c1f87457be96f0d2fef34c2b1fd97c85014be3b9495a7e5","observation_id":"914c9004-f6a0-4422-8932-79947dd1f104","resolution":{"observed_at":"2026-08-11T05:13:38.265995Z","resolver_source":"local_arxiv","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2406.01572","last_updated":"2025-03-25T18:50:23Z","snapshot_observed_at":"2026-08-16T20:11:49.656877Z","submitted_at":"2024-06-03T17:51:54Z","title":"Unlocking Guidance for Discrete State-Space Diffusion and Flow Models","version":4},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2406.01572","snapshot_observed_at":"2026-08-11T05:13:37.754589Z","title":"Unlocking guidance for discrete state-space diffusion and flow models","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2022,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.754589Z"},"links":{"cited_paper":"/paper/2406.01572","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:84b566fcce563d80ded979bad55b3fb911be3bdc7c2585f5bad3e43d8c1c8674","observation_id":"8d6ace08-2d9b-4621-a00a-7710a11d74dd","resolution":{"observed_at":"2026-08-11T05:13:37.754589Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1101/2024.07.31.606098","metadata_source":"doi_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:38.074228Z","title":"mop- pit:de novogeneration of motif-specific binders 10 De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion with protein language models","venue":null,"work_id":"6ed8991d-bcf7-47b9-9411-95a1b52866e8","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2023,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.727064Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:863261991c7cdfcd1307401822cd36dfe25d9d743524f400b22a567371f147a8","observation_id":"f24deb49-25b1-4982-8ae2-dce3ff02997c","resolution":{"observed_at":"2026-08-11T05:13:38.084165Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2406.03736","last_updated":"2026-03-23T09:46:05Z","snapshot_observed_at":"2026-07-06T02:11:23.670680Z","submitted_at":"2024-06-06T04:22:11Z","title":"Your Absorbing Discrete Diffusion Secretly Models the Conditional Distributions of Clean Data","version":4},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2406.03736","snapshot_observed_at":"2026-08-11T05:13:37.762183Z","title":"Your absorbing discrete diffusion secretly models the conditional distributions of clean data","venue":null,"work_id":null,"year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2024,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.762183Z"},"links":{"cited_paper":"/paper/2406.03736","citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:16e99f03b91f6f4959e3c2f81ce2679007a1ba310988d4ac8fa9269edb1e8a7a","observation_id":"f1addbb4-23f9-4ab4-8ec7-511ba852ac6c","resolution":{"observed_at":"2026-08-11T05:13:37.762183Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-11T05:13:39.231118Z","title":"Rigon, C., Andrisani, A., Forzan, M., D’Antona, D., Bru- son, A., Cosmi, E., Ambrosini, G., Tiboni, G","venue":null,"work_id":"d40306bd-50b6-486e-b39f-79bd8cc4d81e","year":null},"citing_paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion","version":4},"reference_index":2025,"source":"pdf_text","source_observed_at":"2026-08-11T05:13:37.786446Z"},"links":{"citing_paper":"/paper/2412.17780"},"observation_digest":"sha256:eb3954855103a7f0bae51350820d3742ad433bd3911f5a0104e8c06128662652","observation_id":"56d28f0b-b04e-4100-9b8e-8aa4510a9d14","resolution":{"observed_at":"2026-08-11T05:13:39.246788Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"state":"measured"}}],"paper":{"arxiv_id":"2412.17780","last_updated":"2025-06-02T12:07:55Z","latest_version":4,"primary_category":"q-bio.BM","snapshot_observed_at":"2026-08-18T03:05:45.317584Z","submitted_at":"2024-12-23T18:38:49Z","title":"PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion"},"reference_resolution":{"displayed":31,"state_counts":{"malformed_identifier":0,"metadata_mismatch":0,"parse_uncertain":0,"unresolved":14,"verified_exact":4,"verified_fuzzy":13},"total_outbound_references":31},"refusal":"A citation records a reference. It does not transfer a finding from one paper to another.","schema":"pith.paper-citation-record.v1","standing_sources":[{"observed_at":"2026-08-18T06:34:40.430872+00:00","source":"crossref"},{"observed_at":"2026-08-18T06:34:34.496301+00:00","source":"retraction_watch"}],"thesis":"As of 18 August 2026, this Paper Citation Record lists 31 of 31 outbound references and 3 inbound Pith citation observations for arXiv:2412.17780."}