{"as_of":"2026-08-12T08:47:00Z","caps":{"database_statements":6,"inbound":100,"outbound":100},"context_digest":"sha256:2bd5cbc2497c14b475c667a7ee637f6a2ec3f30d23e44eca5346e228bca929eb","coverage":[{"denominator":51,"lane":"reference_resolution","note":"Typed states for the displayed outbound observations.","records_observed":51,"source":"paper_references, paper_reference_links","source_observed_at":"2026-08-10T04:31:56.171953Z","state":"measured"},{"denominator":51,"lane":"standing_notices","note":"One-hop event checks from named stored sources.","records_observed":51,"source":"scholarly_work_events, retraction_status_cache","source_observed_at":"2026-08-12T06:34:41.77262+00:00","state":"measured"},{"denominator":0,"lane":"inbound_itemization","note":"Pith citing papers itemized under the disclosed page cap.","records_observed":0,"source":"paper_references, paper_reference_links","source_observed_at":null,"state":"measured"},{"denominator":1,"lane":"external_citation_measurements","note":"A source-named dated measurement, never combined with another source.","records_observed":0,"source":"cited_works","source_observed_at":null,"state":"measured"}],"external_citation_measurements":[],"inbound":[],"links":{"evidence":"/evidence","html":"/paper/2501.18650/citation-record","integrity":"/paper/2501.18650/integrity","json":"/paper/2501.18650/citation-record.json","paper":"/paper/2501.18650"},"outbound":[{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1186/s13059-019-1795-z","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"A comparison of automatic cell identification methods for single- cell RNA sequencing data","venue":"Genome biology","work_id":"90e5c88e-7a1e-4e9c-a024-bffac1078e2e","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":1,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.925911Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:7612c017a2e07101bf330a3f697ed6f98011d0ba318052daa6dd9fe5be5ccf48","observation_id":"657bde98-c267-4aa6-92d5-969e93bf9b1e","resolution":{"observed_at":"2026-08-10T04:31:56.367800Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1186/s13059-019-1862-5","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"scPred: accurate supervised method for cell-type clas- sification from single-cell RNA-seq data","venue":"Genome biology","work_id":"d9b43943-d3e0-47e7-93d8-0def3db3fae0","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":2,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.931480Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:f667878531822ef63245596b27025d3bec940b636166bc27fac037198bbe342a","observation_id":"9b71a2f1-c950-426f-a061-6798e7ef3f74","resolution":{"observed_at":"2026-08-10T04:31:56.352953Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.071632Z","title":"flowMatch: Cell population matching and meta-clustering in Flow Cytometry","venue":null,"work_id":"52bd883f-e8bb-40e8-ae59-fa8e2d5a7c49","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":3,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.936213Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:61ba0e1eacd6da32219896efcc6e1b9ce0f7d30cd760317132f6827e3e011675","observation_id":"2b8ad281-16a2-4f10-99e5-3fd649018470","resolution":{"observed_at":"2026-08-10T04:31:57.076304Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.057982Z","title":"Low-avidity CD4+ T cell responses to SARS-CoV-2 in unexposed individuals and humans with severe COVID-19","venue":null,"work_id":"8d24c71f-6eb1-4968-9a29-89fbff5123bc","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":4,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.941424Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:e5aef18b2eb8ee467279a752938b6031c3f8ca4855febdb75a4a79bfd71b7362","observation_id":"963fe428-60e7-4e60-a557-3e1a97870b3e","resolution":{"observed_at":"2026-08-10T04:31:57.062573Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:55.946449Z","title":"A Single-Cell Transcriptomic Map of the Human and Mouse Pan- creas Reveals Inter- and Intra-cell Population Structure","venue":null,"work_id":null,"year":2016},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":5,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.946449Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:99a7db8eb355910d632c15c29df2a651bb98251d2d2fce159adbba1f40064335","observation_id":"2ffefb13-b341-46fe-9b8b-ff5bb3efc846","resolution":{"observed_at":"2026-08-10T04:31:55.946449Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.044426Z","title":"Iterative Bregman projections for regularized transportation problems","venue":null,"work_id":"1b630922-4c64-4fe3-af6e-a7ee4e8654c3","year":2015},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":6,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.951633Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:bfcdd696f41be58ac48bb99af5773b2336382d2adb58e5e524167ad2f8ca4b25","observation_id":"69655c15-7c52-4b7f-8a50-9fbfffd2290f","resolution":{"observed_at":"2026-08-10T04:31:57.049058Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.030500Z","title":"A unified computational framework for single-cell data integration with optimal transport","venue":null,"work_id":"0e21087d-922c-4492-8054-e3db9548b407","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":7,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.957873Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:308996ca22e26550d63fe18217127d706913dcacb73ad107e41bf47383eef0ae","observation_id":"92f64205-356e-41d6-9f0e-be0e7ba338cd","resolution":{"observed_at":"2026-08-10T04:31:57.035335Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1038/s41596-021-00534-0","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods","venue":"Nature Protocols","work_id":"3ba06b2a-9b54-499c-ada9-05ec9a9c60b3","year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":8,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.962482Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:54a2d221f9118b7c6df808deea1f1b3cf6338a6eb734de8cb91d89bc077358af","observation_id":"899e9836-2c12-4f38-b146-5c0b25299112","resolution":{"observed_at":"2026-08-10T04:31:56.326810Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.016595Z","title":"POT: Python Optimal Transport","venue":null,"work_id":"9d716392-1352-4b3b-b360-295a66bd54ec","year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":9,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.967429Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:adb4a5b2bf6c361dd86d1d7ae31afac0c4917f580a91545305e9bd6ffd588d79","observation_id":"62f70c4f-2e6b-4fbd-9477-1ab8f9f71287","resolution":{"observed_at":"2026-08-10T04:31:57.021090Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:57.002393Z","title":"ClusterMap: compare multiple single cell RNA-Seq datasets across dif- ferent experimental conditions","venue":null,"work_id":"4b5e10e1-920e-4b0d-b35f-1fc1895f0225","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":10,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.971991Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:772592883609ad581dbcf945d03f6ea01d816cd5269fd646d64db949280b8589","observation_id":"ab68c968-0fb1-451c-84ff-cc20d9ce793e","resolution":{"observed_at":"2026-08-10T04:31:57.007369Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.987873Z","title":"Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors","venue":null,"work_id":"c67dcd49-38b1-40f1-a26a-f5889ab10452","year":2018},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":11,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.976786Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:506e45b57506b5bb9ceb058ac634377bab546b38dcda93ccaa8bd37a9e3a17f4","observation_id":"27acdcef-1b38-4d4a-a70e-c5fd06e5e579","resolution":{"observed_at":"2026-08-10T04:31:56.992520Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.973445Z","title":"Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs","venue":null,"work_id":"8a8b4ba4-533d-4c77-83a5-ed6b8f15c8b3","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":12,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.981458Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:8ab9dabf2f82ac0ee0950c11d1293dc43a66032190faffc5968d7edc8024007e","observation_id":"a63d5bbf-b163-41a8-ae28-3983b041b28a","resolution":{"observed_at":"2026-08-10T04:31:56.978358Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.959143Z","title":"scMatch: a single-cell gene expres- sion profile annotation tool using reference datasets","venue":null,"work_id":"bed86cca-ba17-42ca-bb6a-f08a7fe85c42","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":13,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.986080Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:66571dd16bd8a8284ebfa2e21156c4eb11adada07170b1db8c500ceb04b15c46","observation_id":"986b40d3-cd1c-4bda-800e-e3fe5779421e","resolution":{"observed_at":"2026-08-10T04:31:56.963903Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.944838Z","title":"Evaluation of deep learning-based feature selection for single-cell RNA sequencing data analysis","venue":null,"work_id":"972f08d8-a7a0-43d3-bd8b-8e957056ff8a","year":2023},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":14,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:55.999095Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:48a6a45780284c0c0268622458b1f308303b17cec9d8bde1d08a496f397e9bfa","observation_id":"11c13918-a5fa-466d-92fe-ab05f2aea6a3","resolution":{"observed_at":"2026-08-10T04:31:56.949634Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.004045Z","title":"Optimal Transport improves cell- cell similarity inference in single-cell omics data","venue":null,"work_id":null,"year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":15,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.004045Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:9b67b67220dabb0bc13acea85a4a83127fb007b0c5101b8d490f997e192efb92","observation_id":"8b2cce5e-c808-460a-8d64-303ffab6f508","resolution":{"observed_at":"2026-08-10T04:31:56.004045Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.930496Z","title":"Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data","venue":null,"work_id":"d356d9b5-e208-4bfb-9915-b45bce41aac6","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":16,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.010144Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:9c4632e5661c6bf09c0b2ea8f529fb971850b0a1cfd6380578aacb6f353ad9a9","observation_id":"e3310a18-1c62-43ef-998c-9ad50a8db1cf","resolution":{"observed_at":"2026-08-10T04:31:56.935402Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.916444Z","title":"Stalled developmental programs at the root of pediatric brain tumors","venue":null,"work_id":"e6851b94-1dbe-4dee-afc4-700976a47984","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":17,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.014750Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:89acf859505287ec14a7c5725135a8ed035b6c14a19332bb80eb99835b60621d","observation_id":"7247ae5a-df2e-4c23-90cb-fdf3393eec7c","resolution":{"observed_at":"2026-08-10T04:31:56.921359Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.901939Z","title":"Bayesian approach to single- cell differential expression analysis","venue":null,"work_id":"5d4c1f38-86ef-4c6e-b650-1f14f94e4432","year":2014},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":18,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.019128Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:ca6f9c987439cea8d372747629232a64027efcaf5313a7d4d3559bdd1fc31b0b","observation_id":"42bb48d9-3050-4ad6-a1e6-c3f2c99feb5e","resolution":{"observed_at":"2026-08-10T04:31:56.906742Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1007/978-1-4939-9057-3","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"Analysis of Technical and Biological Variability in Single-Cell RNA Sequencing","venue":"Methods in molecular biology","work_id":"7d010657-daad-44db-b663-20f849e6d8c1","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":19,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.024494Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:dafc51150212c4dc9a74ba47a680e40e6d6a5452a6d1bb3212304df6eeb727ae","observation_id":"b1e43b6d-abb8-4837-8704-adddfeceb7c3","resolution":{"observed_at":"2026-08-10T04:31:56.301521Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.887776Z","title":"Challenges in unsuper- vised clustering of single-cell RNA-seq data","venue":null,"work_id":"a246d16b-1529-4d59-a9ad-bdffe436d0bb","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":20,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.029892Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:c36d75bbf4385c80a5f96c15885bc4f2bbe646ee03793a95fbf5a2915ef63d85","observation_id":"671e4bc0-e769-4469-adc7-bbf23b63c915","resolution":{"observed_at":"2026-08-10T04:31:56.892361Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1101/150292","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"scmap - A tool for unsupervised projection of single cell RNA-seq data","venue":"bioRxiv (Cold Spring Harbor Laboratory)","work_id":"055d1aaf-cf62-4380-a093-42b1e44239db","year":2017},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":21,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.034644Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:deafd30d7c763bb6b9c9fd4241254723bf530d9bbe7c4ceec464995921a5eac1","observation_id":"7023e8b9-d910-41aa-acb6-85a926ccecbe","resolution":{"observed_at":"2026-08-10T04:31:56.286460Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.873296Z","title":"Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus","venue":null,"work_id":"d0655e25-b606-414f-8b8d-6baa753e1c86","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":22,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.039321Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:3185c104d7aff68749228c1c2839bf8ec1e8269bebb15bcd88a4d5bf13602441","observation_id":"95037bf9-60dd-4375-bc91-e98e7e74865b","resolution":{"observed_at":"2026-08-10T04:31:56.877946Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.858951Z","title":"Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes","venue":null,"work_id":"8322e9f9-e548-4a74-a640-1768e1c1c757","year":2017},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":23,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.043897Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:ce73020da5f5fe97af6889725053f7870de59a390ba43a32f0af01f2a2e05774","observation_id":"b60c1b4d-0e26-462c-a323-9c4273f1bec9","resolution":{"observed_at":"2026-08-10T04:31:56.863782Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.844455Z","title":"Machine learning for cell type classification from single nucleus RNA sequencing data","venue":null,"work_id":"5425fb2d-0b5e-4cc8-ae1d-6dccceab7e6a","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":24,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.048881Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:44462b4b8ba807c1831887cc5d7c4ce72c5151692acbc4be935bcf5ad8e1a709","observation_id":"eec3cf43-a795-4b5c-ba26-6d9ba0766371","resolution":{"observed_at":"2026-08-10T04:31:56.849302Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.053313Z","title":"Optimal Transport with Relaxed Marginal Constraints","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":25,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.053313Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:e04be70b0648b7adaf4d352e7db75e1da43de698c71d2f33314d32ec1564d674","observation_id":"cacfd923-d3c9-44d3-82bd-771e64d6a3d1","resolution":{"observed_at":"2026-08-10T04:31:56.053313Z","resolver_source":null,"status":"malformed_identifier"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.829300Z","title":"A neural network-based method for exhaustive cell label assign- ment using single cell RNA-seq data","venue":null,"work_id":"b3794c60-41a0-4013-95d4-159ce28bd15c","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":26,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.057723Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:f0ffb9ad16b6bedcf453d435571be5947035e8157bc02feed9dbcc70fca92db7","observation_id":"74cc02ac-62eb-4693-8bbf-5f05a4eebdb7","resolution":{"observed_at":"2026-08-10T04:31:56.834552Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.815352Z","title":"Multisource single-cell data integration by MA W barycenter for Gaussian mixture models","venue":null,"work_id":"2b6ee5af-86b7-490b-8602-d744d20b2432","year":2023},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":27,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.062305Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:0b3ab7fde40c3681ea66b023995b44f77d8b3a14105d70e8488496f1218db91d","observation_id":"8d728509-58ca-43f6-bf42-aafc19d6502b","resolution":{"observed_at":"2026-08-10T04:31:56.819977Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.801384Z","title":"A comparison of batch effect removal methods for enhancement of predic- tion performance using MAQC-II microarray gene expression data","venue":null,"work_id":"1db01e25-1e0a-4c89-b46a-942df58d78e8","year":2010},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":28,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.066912Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:8c60913d652538e9508de19f5fdcb1b2521c92ff41cdf52337ac08b51d0f917b","observation_id":"9de2408d-d228-47f4-8906-a0205cf2baa6","resolution":{"observed_at":"2026-08-10T04:31:56.806250Z","resolver_source":"raw_fallback","status":"malformed_identifier"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.787215Z","title":"Putative cell type discovery from single-cell gene expression data","venue":null,"work_id":"1cd61c79-d19e-4c6c-9786-63cc44ea3387","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":29,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.071456Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:63cddb9b7f4f4e04bd3189a9a222cc9eefb35e64e573977e02b0a41c07fc40ea","observation_id":"73fe6549-4f40-47e2-81b6-dd610c227e57","resolution":{"observed_at":"2026-08-10T04:31:56.791884Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.772690Z","title":"Enabling reproducible re-analysis of single-cell data","venue":null,"work_id":"775cd1e5-0e66-41fd-9981-78f18804c571","year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":30,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.076755Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:89f61d8800ac3dc3fb49342f23b5b8fbed7d05fc280066f620d627794ee68626","observation_id":"7162a031-05c6-470d-94ac-d9787e4bf10f","resolution":{"observed_at":"2026-08-10T04:31:56.777621Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":"2019.01331","doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.480406Z","title":"Reproducibility of Methods to Detect Differentially Expressed Genes from Single-Cell RNA Sequencing","venue":null,"work_id":"87c09f24-1a82-45d9-86e1-306e71c74f8d","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":31,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.081221Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:b7e05cb5caa88a7b9b9f2286cdc750eeb1c83806a7c71d437b0823ebfa4a348d","observation_id":"701cc686-24d2-47e5-b1a8-6a9464e70107","resolution":{"observed_at":"2026-08-10T04:31:56.489981Z","resolver_source":"raw_fallback","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.757515Z","title":"QFMatch: multidimensional flow and mass cytometry samples alignment","venue":null,"work_id":"1a5480d6-d81f-468c-b98b-07db70d4963d","year":2018},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":32,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.085693Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:5089b01576bb2c29e77f1b18c7fa0c49eeba887d787c07c12eec681cc242c404","observation_id":"9eb503be-eaee-4299-b2e9-10c34e64b96c","resolution":{"observed_at":"2026-08-10T04:31:56.762297Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.742302Z","title":"A comparison of marker gene selection methods for single-cell RNA sequencing data","venue":null,"work_id":"64f2b24f-c898-419e-9b9c-cbf1e83551f4","year":2024},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":33,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.090039Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:c371ccd59f148b39611502cf484f2f478f2059342f5328646abba6e554a4b05d","observation_id":"c07a5b7e-caeb-4f7a-ae3b-be0b1ba078b1","resolution":{"observed_at":"2026-08-10T04:31:56.747141Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1093/bioinformatics/btae421","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"PredGCN: a Pruning-enabled Gene-Cell Net for automatic cell annotation of single cell transcriptome data","venue":"Bioinformatics","work_id":"8b46b9df-af31-4004-83d7-4a9a5dd0f49e","year":2024},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":34,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.094355Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:7b6028478827e5417d0c2ed12aacf1912aba970b2f268265e43d3b5aaa69d920","observation_id":"d39c38cd-346b-479b-a2cd-0f9ae551ea12","resolution":{"observed_at":"2026-08-10T04:31:56.270123Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.728487Z","title":"Identification of cell-type-specific marker genes from co-expression patterns in tissue samples","venue":null,"work_id":"497c5958-ca25-46d0-b478-19f5d76dac03","year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":35,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.099135Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:0d340de1bf873325124808cd56ff3fa0d743de528d4444a9ed02019ecbefd29f","observation_id":"b8cce651-e924-4f24-8116-ced83b7eecf8","resolution":{"observed_at":"2026-08-10T04:31:56.733291Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.713453Z","title":"PIPET: predicting relevant subpopulations in single-cell data using phenotypic information from bulk data","venue":null,"work_id":"f44476f4-5cb6-47a3-ae16-6c1d2f8ef37c","year":2024},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":36,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.103410Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:1edcb838c54951388b1eff2bac03ea2bae4c940831839599901ce544a34fcf62","observation_id":"21dafcc5-b3bf-4bc0-bcb2-1c89160ddcf3","resolution":{"observed_at":"2026-08-10T04:31:56.718201Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.699088Z","title":"Single-cell transcriptome profiling of human pancreatic islets in health and type 2 diabetes","venue":null,"work_id":"d1e463e1-c414-47a1-8038-4857ff78c184","year":2016},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":37,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.107745Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:f84f6d79c7925b709a6f636a3b7b24b6cfaa03df0503bfb85576d7afeded44de","observation_id":"22fb03a3-28ee-432b-9c89-4b14cc804b23","resolution":{"observed_at":"2026-08-10T04:31:56.703877Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1038/nprot.2017.149","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"Exponential scaling of single-cell RNA-seq in the past decade","venue":"Nature Protocols","work_id":"c9623581-dedb-4028-8013-84f083d5b64c","year":2018},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":38,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.112286Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:e6e4117592d55acebcd19055bb57d6c1294b5cd9dfd0a4be776e83ce7f59d0b0","observation_id":"541bf25b-8225-4dbd-b46d-3a166958caec","resolution":{"observed_at":"2026-08-10T04:31:56.255374Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.683321Z","title":"Adult mouse cortical cell taxonomy revealed by single cell transcrip- tomics","venue":null,"work_id":"98297a13-5ffd-4f90-85c3-044d82902909","year":2016},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":39,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.116752Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:0ddc6cb49f5020ef13d625b306b47ba34426fab4e5c63740a748aa321f5d0e11","observation_id":"d77c2d62-a3cd-419f-94ff-483bee9fffd0","resolution":{"observed_at":"2026-08-10T04:31:56.688331Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":{"arxiv_id":"2106.01963","last_updated":"2021-06-03T16:10:42Z","snapshot_observed_at":"2026-08-11T11:48:41.238766Z","submitted_at":"2021-06-03T16:10:42Z","title":"A Survey on Optimal Transport for Machine Learning: Theory and Applications","version":1},"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":null,"pith_arxiv_id":"2106.01963","snapshot_observed_at":"2026-08-10T04:31:56.121267Z","title":"A Survey on Optimal Transport for Machine Learning: Theory and Applications","venue":null,"work_id":null,"year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":40,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.121267Z"},"links":{"cited_paper":"/paper/2106.01963","citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:b2437db73940256fd0f00cf8035ab98517927bd5f81fb8df6287f32588183711","observation_id":"4d062bc7-8048-4a00-92d0-fbda901ce116","resolution":{"observed_at":"2026-08-10T04:31:56.121267Z","resolver_source":null,"status":"unresolved"},"standing_notice":{"events":[],"reason":"canonical_work_link_unavailable","source_receipts":[],"state":"unavailable"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.668473Z","title":"Batch effects and the effective design of single-cell gene expression studies","venue":null,"work_id":"e081ae5a-3ee0-427b-9bcf-4ed856c35215","year":2017},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":41,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.125980Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:a26feeeb4bbd860b05fe3ca6ca5e57bbe73f26e6e62a7bc0e9477ee32b299ab1","observation_id":"37558ee2-f7a1-4043-a392-b4479c03ccae","resolution":{"observed_at":"2026-08-10T04:31:56.673429Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.653284Z","title":"Identifying cell types to interpret scRNA-seq data: how, why and more possibilities","venue":null,"work_id":"cbf87f7c-93ec-43c8-8ea8-33d9ee79f114","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":42,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.131390Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:55d70d68bb745e31e7171bd06db0e94c85c678d7a5c6134b1b8fcb2d4f0a47de","observation_id":"9646e9ad-68ff-40cf-a52b-c7260a271a83","resolution":{"observed_at":"2026-08-10T04:31:56.658416Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.637317Z","title":"Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering","venue":null,"work_id":"e5806d79-83d0-4305-ad0e-1fce26995d68","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":43,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.135820Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:ee980d63e1fe6dadc087223b981fe45b77dc82d6c1200570371ec84b626ec87a","observation_id":"d060a095-6725-4c06-9754-ed059b0d3e40","resolution":{"observed_at":"2026-08-10T04:31:56.642655Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.621976Z","title":"Single-cell RNA sequencing to identify cellular heterogeneity and targets in cardiovascular diseases: from bench to bedside","venue":null,"work_id":"bec80bca-f260-4321-aa4b-3573df9985e9","year":2023},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":44,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.140082Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:a102b8622abf05ae7ddd8a236f33d7464f0557b662c143f36c4a80bad0b0b018","observation_id":"5f76a912-c59e-4f41-ac67-35d4e9223671","resolution":{"observed_at":"2026-08-10T04:31:56.626608Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.607382Z","title":"scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data","venue":null,"work_id":"ec7054fa-357e-4f82-8037-1b5f31c922cc","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":45,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.144498Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:c3015d2c27fddf83df976e99a1bd2d58725c2cc9dadc6479672397d02c03a9ae","observation_id":"177a841d-3e70-47d8-b1fa-7af9eec514c4","resolution":{"observed_at":"2026-08-10T04:31:56.612113Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1093/bioinformatics/btab700","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets","venue":"Bioinformatics","work_id":"c7518cab-60fa-42b6-92fe-5ac60ed8773f","year":2021},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":46,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.149074Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:429655feda03f16834d541790bb8be1909647c1307aab34fcdc71b6ae2dc9076","observation_id":"38f5af9e-ac39-4374-9b28-fb250ee1873e","resolution":{"observed_at":"2026-08-10T04:31:56.240359Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.592475Z","title":"Multi-view clustering by CPS-merge analysis with application to multimodal single-cell data","venue":null,"work_id":"347791ce-3f92-4369-b843-5a718accedfb","year":2023},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":47,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.153604Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:41526022e2cda83698723c7c361ff27d9877bd461a53c5b5068062700e736019","observation_id":"983a92ff-6835-42bc-885b-50e47f017fda","resolution":{"observed_at":"2026-08-10T04:31:56.597531Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.577611Z","title":"BSDE: barycenter single-cell differential expression for case–control studies","venue":null,"work_id":"433a1373-7815-4dec-b827-9002e94c1dc9","year":2022},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":48,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.157917Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:6ac2d0509929fa84b8fe9e39ad247df045324c0ea9b4821fde7cf0b8e3e37371","observation_id":"91baf775-30dd-4ac8-898c-8434df4adaeb","resolution":{"observed_at":"2026-08-10T04:31:56.582412Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1093/bib/bbaa339","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test","venue":"Briefings in Bioinformatics","work_id":"1ecff119-d549-4589-b5d4-4550e64cff86","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":49,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.162349Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:b29203f2b194f67ef5bec28e1339eb32f55aea4cfcec88e5e004e688f4d2d479","observation_id":"52901840-89d1-45df-9f95-813cb9ffa7d3","resolution":{"observed_at":"2026-08-10T04:31:56.225914Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":"10.1038/s41421-020-0157-z","metadata_source":"openalex","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T05:30:23.456663Z","title":"Single-cell RNA sequencing reveals the heterogeneity of liver- resident immune cells in human","venue":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","work_id":"fcea497d-ed03-40ed-8fcc-4e787151005e","year":2020},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":50,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.166707Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:e90888e0a8841f018a8c154ad242c8288ba17706459d25add37af02af9c35545","observation_id":"36db1f11-81ff-4f14-be1f-94e690c41b36","resolution":{"observed_at":"2026-08-10T04:31:56.209974Z","resolver_source":"doi","status":"verified_exact"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}},{"citation":{"cited_paper":null,"cited_work":{"arxiv_id":null,"doi":null,"metadata_source":"raw_reference","pith_arxiv_id":null,"snapshot_observed_at":"2026-08-10T04:31:56.561893Z","title":"Single-cell transcriptomics of human and mouse lung cancers reveals conserved myeloid populations across individuals and species","venue":null,"work_id":"e40c1269-6158-444c-896c-c6b84f9b85d5","year":2019},"citing_paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints","version":1},"reference_index":51,"source":"pdf_text","source_observed_at":"2026-08-10T04:31:56.171953Z"},"links":{"citing_paper":"/paper/2501.18650"},"observation_digest":"sha256:4c9f30567f2a5ff80c565d4a63bce534868cc17e95395b7113c7c30c3c909590","observation_id":"d58ea6a6-cd32-4922-8f36-584db419a73a","resolution":{"observed_at":"2026-08-10T04:31:56.567970Z","resolver_source":"raw_fallback","status":"verified_fuzzy"},"standing_notice":{"events":[],"observation":"No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.","reason":null,"source_receipts":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"state":"measured"}}],"paper":{"arxiv_id":"2501.18650","last_updated":"2025-01-29T21:29:25Z","latest_version":1,"primary_category":"q-bio.GN","snapshot_observed_at":"2026-08-11T12:42:44.444744Z","submitted_at":"2025-01-29T21:29:25Z","title":"Constructing Cell-type Taxonomy by Optimal Transport with Relaxed Marginal Constraints"},"reference_resolution":{"displayed":51,"state_counts":{"malformed_identifier":2,"metadata_mismatch":0,"parse_uncertain":0,"unresolved":3,"verified_exact":11,"verified_fuzzy":35},"total_outbound_references":51},"refusal":"A citation records a reference. It does not transfer a finding from one paper to another.","schema":"pith.paper-citation-record.v1","standing_sources":[{"observed_at":"2026-08-12T06:34:41.77262+00:00","source":"crossref"},{"observed_at":"2026-08-12T06:34:36.333875+00:00","source":"retraction_watch"}],"thesis":"As of 12 August 2026, this Paper Citation Record lists 51 of 51 outbound references and 0 inbound Pith citation observations for arXiv:2501.18650."}