{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2016:5CTW64GSQJFIFCQOFEYKY37WTA","short_pith_number":"pith:5CTW64GS","schema_version":"1.0","canonical_sha256":"e8a76f70d2824a828a0e2930ac6ff69820ed8c04a1c0e300163c42458f23ccea","source":{"kind":"arxiv","id":"1611.05777","version":1},"attestation_state":"computed","paper":{"title":"DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"cs.CV","authors_text":"Hamid Reza Hassanzadeh, May D. Wang","submitted_at":"2016-11-17T16:52:41Z","abstract_excerpt":"Transcription factors (TFs) are macromolecules that bind to \\textit{cis}-regulatory specific sub-regions of DNA promoters and initiate transcription. Finding the exact location of these binding sites (aka motifs) is important in a variety of domains such as drug design and development. To address this need, several \\textit{in vivo} and \\textit{in vitro} techniques have been developed so far that try to characterize and predict the binding specificity of a protein to different DNA loci. The major problem with these techniques is that they are not accurate enough in prediction of the binding aff"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1611.05777","kind":"arxiv","version":1},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"cs.CV","submitted_at":"2016-11-17T16:52:41Z","cross_cats_sorted":[],"title_canon_sha256":"cc4151324ab98311c0c56df63b295849163ad7c71fa7fc1bed7aa49c9f211361","abstract_canon_sha256":"5c084480f5966f2cd7e0a647fecf94a878770f7d4978e21c63df76b9992e49c6"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T00:58:02.603819Z","signature_b64":"MOLBuTjj5pLsdlJhnNEEPjj2oDfz8mXdoSEzjSIPOBJ20r6KMi+EFZ0q3aENjbun6JNt0ZaUehNcmpsW+KskDw==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"e8a76f70d2824a828a0e2930ac6ff69820ed8c04a1c0e300163c42458f23ccea","last_reissued_at":"2026-05-18T00:58:02.603374Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T00:58:02.603374Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"cs.CV","authors_text":"Hamid Reza Hassanzadeh, May D. Wang","submitted_at":"2016-11-17T16:52:41Z","abstract_excerpt":"Transcription factors (TFs) are macromolecules that bind to \\textit{cis}-regulatory specific sub-regions of DNA promoters and initiate transcription. Finding the exact location of these binding sites (aka motifs) is important in a variety of domains such as drug design and development. To address this need, several \\textit{in vivo} and \\textit{in vitro} techniques have been developed so far that try to characterize and predict the binding specificity of a protein to different DNA loci. The major problem with these techniques is that they are not accurate enough in prediction of the binding aff"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1611.05777","kind":"arxiv","version":1},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1611.05777","created_at":"2026-05-18T00:58:02.603447+00:00"},{"alias_kind":"arxiv_version","alias_value":"1611.05777v1","created_at":"2026-05-18T00:58:02.603447+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1611.05777","created_at":"2026-05-18T00:58:02.603447+00:00"},{"alias_kind":"pith_short_12","alias_value":"5CTW64GSQJFI","created_at":"2026-05-18T12:30:01.593930+00:00"},{"alias_kind":"pith_short_16","alias_value":"5CTW64GSQJFIFCQO","created_at":"2026-05-18T12:30:01.593930+00:00"},{"alias_kind":"pith_short_8","alias_value":"5CTW64GS","created_at":"2026-05-18T12:30:01.593930+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA","json":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA.json","graph_json":"https://pith.science/api/pith-number/5CTW64GSQJFIFCQOFEYKY37WTA/graph.json","events_json":"https://pith.science/api/pith-number/5CTW64GSQJFIFCQOFEYKY37WTA/events.json","paper":"https://pith.science/paper/5CTW64GS"},"agent_actions":{"view_html":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA","download_json":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA.json","view_paper":"https://pith.science/paper/5CTW64GS","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1611.05777&json=true","fetch_graph":"https://pith.science/api/pith-number/5CTW64GSQJFIFCQOFEYKY37WTA/graph.json","fetch_events":"https://pith.science/api/pith-number/5CTW64GSQJFIFCQOFEYKY37WTA/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA/action/timestamp_anchor","attest_storage":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA/action/storage_attestation","attest_author":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA/action/author_attestation","sign_citation":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA/action/citation_signature","submit_replication":"https://pith.science/pith/5CTW64GSQJFIFCQOFEYKY37WTA/action/replication_record"}},"created_at":"2026-05-18T00:58:02.603447+00:00","updated_at":"2026-05-18T00:58:02.603447+00:00"}