{"record_type":"pith_number_record","schema_url":"https://pith.science/schemas/pith-number/v1.json","pith_number":"pith:2014:FMMBLNG2NHI5E7B632XJYDWGFY","short_pith_number":"pith:FMMBLNG2","schema_version":"1.0","canonical_sha256":"2b1815b4da69d1d27c3edeae9c0ec62e1e3665847fc36acdda82d5df4c0cf493","source":{"kind":"arxiv","id":"1401.2016","version":2},"attestation_state":"computed","paper":{"title":"VCF2Networks: applying Genotype Networks to Single Nucleotide Variants data","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.PE","authors_text":"Ali R. Vahdati, Bertranpetit Jaume, Giovanni Marco Dall'Olio, Laayouni Hafid, Wagner Andreas","submitted_at":"2014-01-09T14:31:09Z","abstract_excerpt":"Summary: Genotype networks are a method used in systems biology to study the innovability of a given phenotype, determining whether the phenotype is robust to mutations, and how do the genotypes associated to it are distributed in the genotype space. Here we developed VCF2Networks, a tool to apply this method to population genetics data, and in particular to single Nucleotide Variants data encoded in the Variant Call file Format (VCF). A complete summary of the properties of the genotype network that can be calculated by VCF2Networks is given in the Supplementary Materials 1.\n  Availability an"},"verification_status":{"content_addressed":true,"pith_receipt":true,"author_attested":false,"weak_author_claims":0,"strong_author_claims":0,"externally_anchored":false,"storage_verified":false,"citation_signatures":0,"replication_records":0,"graph_snapshot":true,"references_resolved":false,"formal_links_present":false},"canonical_record":{"source":{"id":"1401.2016","kind":"arxiv","version":2},"metadata":{"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.PE","submitted_at":"2014-01-09T14:31:09Z","cross_cats_sorted":[],"title_canon_sha256":"a44415ade1f33d998c1419b738660c188c2ee8545bbe0e6ab20ebac7f8ebc04e","abstract_canon_sha256":"5f7f1201fe7d596673fa4cc6cb614e32ffe94cb5bb47d954810f1a7a1045cde0"},"schema_version":"1.0"},"receipt":{"kind":"pith_receipt","key_id":"pith-v1-2026-05","algorithm":"ed25519","signed_at":"2026-05-18T02:51:41.779031Z","signature_b64":"CCcEeiWFoYw/q+Q74ZL/MiIJF02EcDvCPElpIG06zKQ87hxu7U9hrZQ/k4k4kjDXuOkzxaATrHxNO3/W73nuCQ==","signed_message":"canonical_sha256_bytes","builder_version":"pith-number-builder-2026-05-17-v1","receipt_version":"0.3","canonical_sha256":"2b1815b4da69d1d27c3edeae9c0ec62e1e3665847fc36acdda82d5df4c0cf493","last_reissued_at":"2026-05-18T02:51:41.778503Z","signature_status":"signed_v1","first_computed_at":"2026-05-18T02:51:41.778503Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54"},"graph_snapshot":{"paper":{"title":"VCF2Networks: applying Genotype Networks to Single Nucleotide Variants data","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","headline":"","cross_cats":[],"primary_cat":"q-bio.PE","authors_text":"Ali R. Vahdati, Bertranpetit Jaume, Giovanni Marco Dall'Olio, Laayouni Hafid, Wagner Andreas","submitted_at":"2014-01-09T14:31:09Z","abstract_excerpt":"Summary: Genotype networks are a method used in systems biology to study the innovability of a given phenotype, determining whether the phenotype is robust to mutations, and how do the genotypes associated to it are distributed in the genotype space. Here we developed VCF2Networks, a tool to apply this method to population genetics data, and in particular to single Nucleotide Variants data encoded in the Variant Call file Format (VCF). A complete summary of the properties of the genotype network that can be calculated by VCF2Networks is given in the Supplementary Materials 1.\n  Availability an"},"claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1401.2016","kind":"arxiv","version":2},"verdict":{"id":null,"model_set":{},"created_at":null,"strongest_claim":"","one_line_summary":"","pipeline_version":null,"weakest_assumption":"","pith_extraction_headline":""},"references":{"count":0,"sample":[],"resolved_work":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","internal_anchors":0},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"author_claims":{"count":0,"strong_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"builder_version":"pith-number-builder-2026-05-17-v1"},"aliases":[{"alias_kind":"arxiv","alias_value":"1401.2016","created_at":"2026-05-18T02:51:41.778586+00:00"},{"alias_kind":"arxiv_version","alias_value":"1401.2016v2","created_at":"2026-05-18T02:51:41.778586+00:00"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1401.2016","created_at":"2026-05-18T02:51:41.778586+00:00"},{"alias_kind":"pith_short_12","alias_value":"FMMBLNG2NHI5","created_at":"2026-05-18T12:28:28.263976+00:00"},{"alias_kind":"pith_short_16","alias_value":"FMMBLNG2NHI5E7B6","created_at":"2026-05-18T12:28:28.263976+00:00"},{"alias_kind":"pith_short_8","alias_value":"FMMBLNG2","created_at":"2026-05-18T12:28:28.263976+00:00"}],"events":[],"event_summary":{},"paper_claims":[],"inbound_citations":{"count":0,"internal_anchor_count":0,"sample":[]},"formal_canon":{"evidence_count":0,"sample":[],"anchors":[]},"links":{"html":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY","json":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY.json","graph_json":"https://pith.science/api/pith-number/FMMBLNG2NHI5E7B632XJYDWGFY/graph.json","events_json":"https://pith.science/api/pith-number/FMMBLNG2NHI5E7B632XJYDWGFY/events.json","paper":"https://pith.science/paper/FMMBLNG2"},"agent_actions":{"view_html":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY","download_json":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY.json","view_paper":"https://pith.science/paper/FMMBLNG2","resolve_alias":"https://pith.science/api/pith-number/resolve?arxiv=1401.2016&json=true","fetch_graph":"https://pith.science/api/pith-number/FMMBLNG2NHI5E7B632XJYDWGFY/graph.json","fetch_events":"https://pith.science/api/pith-number/FMMBLNG2NHI5E7B632XJYDWGFY/events.json","actions":{"anchor_timestamp":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY/action/timestamp_anchor","attest_storage":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY/action/storage_attestation","attest_author":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY/action/author_attestation","sign_citation":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY/action/citation_signature","submit_replication":"https://pith.science/pith/FMMBLNG2NHI5E7B632XJYDWGFY/action/replication_record"}},"created_at":"2026-05-18T02:51:41.778586+00:00","updated_at":"2026-05-18T02:51:41.778586+00:00"}