{"state_type":"pith_open_graph_state","state_version":"1.0","pith_number":"pith:2012:NC7IT7N3O4BJF53DVLVGWIF2FN","merge_version":"pith-open-graph-merge-v1","event_count":2,"valid_event_count":2,"invalid_event_count":0,"equivocation_count":0,"current":{"canonical_record":{"metadata":{"abstract_canon_sha256":"b9a496b3dbc8cbff58e486a1a8b57a456ad0e9aa891e7903cf67f0698183b6fb","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2012-11-28T17:12:44Z","title_canon_sha256":"556ec39d9b1e4ff70dc861f4eaa1205958445236d0f9a36f016085bbdafecf8a"},"schema_version":"1.0","source":{"id":"1211.6666","kind":"arxiv","version":1}},"source_aliases":[{"alias_kind":"arxiv","alias_value":"1211.6666","created_at":"2026-05-18T01:52:53Z"},{"alias_kind":"arxiv_version","alias_value":"1211.6666v1","created_at":"2026-05-18T01:52:53Z"},{"alias_kind":"doi","alias_value":"10.48550/arxiv.1211.6666","created_at":"2026-05-18T01:52:53Z"},{"alias_kind":"pith_short_12","alias_value":"NC7IT7N3O4BJ","created_at":"2026-05-18T12:27:16Z"},{"alias_kind":"pith_short_16","alias_value":"NC7IT7N3O4BJF53D","created_at":"2026-05-18T12:27:16Z"},{"alias_kind":"pith_short_8","alias_value":"NC7IT7N3","created_at":"2026-05-18T12:27:16Z"}],"graph_snapshots":[{"event_id":"sha256:8a8e79cf5c96a10a9fedfc8fb0a1dcc240bc2f0edd284381bcc63846fd5ebd4f","target":"graph","created_at":"2026-05-18T01:52:53Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"graph_snapshot":{"author_claims":{"count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57","strong_count":0},"builder_version":"pith-number-builder-2026-05-17-v1","claims":{"count":0,"items":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"formal_canon":{"evidence_count":0,"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"paper":{"abstract_excerpt":"We present GobyWeb, a web-based system to facilitate the management and analysis of high-throughput sequencing (HTS) projects. The software provides integrated support for a broad set of HTS analyses and offers a simple plugin extension mechanism. Analyses currently supported include quantification of gene expression for messenger and small RNA sequencing, estimation of DNA methylation (i.e., reduced bisulfite sequencing and whole genome methyl-seq), or the detection of pathogens in sequenced data. In contrast to many analysis pipelines developed for analysis of HTS data, GobyWeb requires sign","authors_text":"Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, Rita Shaknovich, Zachary Zeno","cross_cats":["q-bio.GN"],"headline":"","license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2012-11-28T17:12:44Z","title":"GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data"},"references":{"count":0,"internal_anchors":0,"resolved_work":0,"sample":[],"snapshot_sha256":"258153158e38e3291e3d48162225fcdb2d5a3ed65a07baac614ab91432fd4f57"},"source":{"id":"1211.6666","kind":"arxiv","version":1},"verdict":{"created_at":null,"id":null,"model_set":{},"one_line_summary":"","pipeline_version":null,"pith_extraction_headline":"","strongest_claim":"","weakest_assumption":""}},"verdict_id":null}}],"author_attestations":[],"timestamp_anchors":[],"storage_attestations":[],"citation_signatures":[],"replication_records":[],"corrections":[],"mirror_hints":[],"record_created":{"event_id":"sha256:bb3d8eb91e1a54e5cd470442c903114767016f09d0f101095a80b0324592a2bb","target":"record","created_at":"2026-05-18T01:52:53Z","signer":{"key_id":"pith-v1-2026-05","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","signer_id":"pith.science","signer_type":"pith_registry"},"payload":{"attestation_state":"computed","canonical_record":{"metadata":{"abstract_canon_sha256":"b9a496b3dbc8cbff58e486a1a8b57a456ad0e9aa891e7903cf67f0698183b6fb","cross_cats_sorted":["q-bio.GN"],"license":"http://arxiv.org/licenses/nonexclusive-distrib/1.0/","primary_cat":"q-bio.QM","submitted_at":"2012-11-28T17:12:44Z","title_canon_sha256":"556ec39d9b1e4ff70dc861f4eaa1205958445236d0f9a36f016085bbdafecf8a"},"schema_version":"1.0","source":{"id":"1211.6666","kind":"arxiv","version":1}},"canonical_sha256":"68be89fdbb770292f763aaea6b20ba2b6602d694f45f434acc54e3a575960d20","receipt":{"algorithm":"ed25519","builder_version":"pith-number-builder-2026-05-17-v1","canonical_sha256":"68be89fdbb770292f763aaea6b20ba2b6602d694f45f434acc54e3a575960d20","first_computed_at":"2026-05-18T01:52:53.764923Z","key_id":"pith-v1-2026-05","kind":"pith_receipt","last_reissued_at":"2026-05-18T01:52:53.764923Z","public_key_fingerprint":"8d4b5ee74e4693bcd1df2446408b0d54","receipt_version":"0.3","signature_b64":"6RL3PQ4ERvXWMiIZONvzOlf1EQWnCVPFp5wN3kvtt6EyDl7Muez6En6JhdkGqLX6RSKozAskNkspix9uEaPTCg==","signature_status":"signed_v1","signed_at":"2026-05-18T01:52:53.765625Z","signed_message":"canonical_sha256_bytes"},"source_id":"1211.6666","source_kind":"arxiv","source_version":1}}},"equivocations":[],"invalid_events":[],"applied_event_ids":["sha256:bb3d8eb91e1a54e5cd470442c903114767016f09d0f101095a80b0324592a2bb","sha256:8a8e79cf5c96a10a9fedfc8fb0a1dcc240bc2f0edd284381bcc63846fd5ebd4f"],"state_sha256":"3138f5eb227a59b4065b07b60eea69d4400b2807ebbef8e39495339050995ef8"}