A taxonomically aware OTU clustering method that learns per-taxon genetic distance thresholds from reference sequences and clusters query sequences down the taxonomic hierarchy, with a full Illumina pipeline.
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OptimOTU: Taxonomically aware OTU clustering with optimized thresholds and a bioinformatics workflow for metabarcoding data
A taxonomically aware OTU clustering method that learns per-taxon genetic distance thresholds from reference sequences and clusters query sequences down the taxonomic hierarchy, with a full Illumina pipeline.