ProtLiD² is a ligand-conditioned discrete diffusion model for joint protein sequence-structure generation that reports higher TM-score, pLDDT, and ligand-aware docking pass rates than prior methods on whole-protein and pocket design tasks.
Towards unified and lossless latent space for 3d molecular latent diffusion modeling.arXiv preprint arXiv:2503.15567, 2025
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Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design
ProtLiD² is a ligand-conditioned discrete diffusion model for joint protein sequence-structure generation that reports higher TM-score, pLDDT, and ligand-aware docking pass rates than prior methods on whole-protein and pocket design tasks.