ProtLiD² is a ligand-conditioned discrete diffusion model for joint protein sequence-structure generation that reports higher TM-score, pLDDT, and ligand-aware docking pass rates than prior methods on whole-protein and pocket design tasks.
GCP-VQV AE: A geometry-complete language for protein 3d structure.bioRxiv, 2025
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Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design
ProtLiD² is a ligand-conditioned discrete diffusion model for joint protein sequence-structure generation that reports higher TM-score, pLDDT, and ligand-aware docking pass rates than prior methods on whole-protein and pocket design tasks.