By adding a surface point-cloud encoder to ESM-2 and a GVP structure encoder, S3F and its EVE-augmented version S3F-MSA report state-of-the-art zero-shot protein fitness scores on ProteinGym.
Rollins, Yarin Gal, Chris Sander, and Debora Marks
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Multi-Scale Representation Learning for Protein Fitness Prediction
By adding a surface point-cloud encoder to ESM-2 and a GVP structure encoder, S3F and its EVE-augmented version S3F-MSA report state-of-the-art zero-shot protein fitness scores on ProteinGym.