Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-12T21:51:02.835548Z
Paper Citation Record · LEDGER
Hashing for Protein Structure Similarity Search
As of 14 August 2026, this Paper Citation Record lists 32 of 32 outbound references and 0 inbound Pith citation observations for arXiv:2411.08286.
A citation records a reference. It does not transfer a finding from one paper to another.
Coverage vector
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
Reference resolution
32 of 32 outbound references displayed
- verified exact0
- verified fuzzy24
- unresolved8
- parse uncertain0
- malformed identifier0
- metadata mismatch0
External citation measurements
No source-named external measurement is stored.
Outbound references
Observation 234c643e-08bd-4d0a-a26b-cd805cfa7e7d · outbound
This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.
Hashing for Protein Structure Similarity Search Tm-align: a protein structure alignment algorithm based on the tm-score
Reference 1
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.523003Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation c362368a-8010-4110-91ad-abe3b348880a · outbound
This paper cites Matt: local flexibility aids protein multiple structure alignment.
Hashing for Protein Structure Similarity Search Matt: local flexibility aids protein multiple structure alignment
Reference 2
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.502984Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 5a06cb1f-fd23-4941-a94d-3e74beaf287c · outbound
This paper cites Protein structure alignment by incremental combinato- rial extension (ce) of the optimal path.
Hashing for Protein Structure Similarity Search Protein structure alignment by incremental combinato- rial extension (ce) of the optimal path
Reference 3
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.481285Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 9ad01ba1-3ffb-4eb1-82e2-9942e8292061 · outbound
This paper cites Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Hashing for Protein Structure Similarity Search Flexible structure alignment by chaining aligned fragment pairs allowing twists
Reference 4
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.458916Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation de3d9f79-3fd7-49c1-8152-aa0073bf63a8 · outbound
This paper cites Protein structure alignment beyond spatial proximity.
Hashing for Protein Structure Similarity Search Protein structure alignment beyond spatial proximity
Reference 5
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.434825Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 3ea6943f-f0c8-4a34-b00f-fcf7a1fae9ca · outbound
This paper cites The protein threading problem with sequence amino acid interaction preferences is np-complete.
Hashing for Protein Structure Similarity Search The protein threading problem with sequence amino acid interaction preferences is np-complete
Reference 6
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.414573Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation f73cd9fa-81c8-4a40-97c3-8132618c061b · outbound
This paper cites Fox, Steven E.
Hashing for Protein Structure Similarity Search Fox, Steven E
Reference 7
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.393653Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation a1ccff5a-0eb5-4d3c-a6f9-385a917ab5a9 · outbound
This paper cites Highly accurate protein structure prediction with alphafold.
Hashing for Protein Structure Similarity Search Highly accurate protein structure prediction with alphafold
Reference 8
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.698780Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation c93ea923-8a5d-4b6c-a82f-8eaf93247ef5 · outbound
This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.
Hashing for Protein Structure Similarity Search Accurate prediction of protein structures and interactions using a three-track neural network
Reference 9
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.704392Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 793732dd-e86c-4031-b8b3-6247c8d06157 · outbound
This paper cites Language models of protein sequences at the scale of evolution enable accurate structure prediction.
Hashing for Protein Structure Similarity Search Language models of protein sequences at the scale of evolution enable accurate structure prediction
Reference 10
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.336504Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 182a40fa-be1e-4199-8a2b-204d3577059b · outbound
This paper cites Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Hashing for Protein Structure Similarity Search Alphafold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
Reference 11
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.312723Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 2c6d2d7b-616c-4f35-bf8c-7f84aaefd801 · outbound
This paper cites Automatic classification of protein structure by using gauss integrals.
Hashing for Protein Structure Similarity Search Automatic classification of protein structure by using gauss integrals
Reference 12
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.280244Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation eb22a510-0a55-44c5-a2c1-56ee6656f9dd · outbound
This paper cites Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.
Hashing for Protein Structure Similarity Search Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification
Reference 13
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.255044Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 1db6e965-7b6e-4b01-9263-1bc088ea32b9 · outbound
This paper cites Learning structural motif representations for efficient protein structure search.
Hashing for Protein Structure Similarity Search Learning structural motif representations for efficient protein structure search
Reference 14
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.234980Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 9bb217b1-c18c-4b60-a733-9baa6166fa51 · outbound
This paper cites Fast protein structure comparison through effective representation learning with contrastive graph neural networks.
Hashing for Protein Structure Similarity Search Fast protein structure comparison through effective representation learning with contrastive graph neural networks
Reference 15
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.217898Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 27d923ae-8029-4b56-b6cd-179ff20e844b · outbound
This paper cites Scoring function for automated assessment of protein structure template quality.
Hashing for Protein Structure Similarity Search Scoring function for automated assessment of protein structure template quality
Reference 16
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.742277Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 2340080e-0960-4679-98fa-4b7da57f34ff · outbound
This paper cites Critically assessing the state-of-the-art in protein structure prediction.
Hashing for Protein Structure Similarity Search Critically assessing the state-of-the-art in protein structure prediction
Reference 17
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.178126Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation a228824b-a080-4d7b-ab95-6752134f1d2c · outbound
This paper cites Fast and accurate protein structure search with foldseek.
Hashing for Protein Structure Similarity Search Fast and accurate protein structure search with foldseek
Reference 18
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.151808Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 6406ab85-fc89-4841-bdf1-db80439f965a · outbound
This paper cites Convolutional lstm network: A machine learning approach for precipitation nowcasting.
Hashing for Protein Structure Similarity Search Convolutional lstm network: A machine learning approach for precipitation nowcasting
Reference 19
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.131362Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation bdda6172-28e3-45e5-a800-1b97c8063e00 · outbound
This paper cites Semi-Supervised Classification with Graph Convolutional Networks.
Hashing for Protein Structure Similarity Search Semi-Supervised Classification with Graph Convolutional Networks
Reference 20
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.764231Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0cb1c970-837c-479e-8762-1da1a9092b63 · outbound
This paper cites Feature learning based deep supervised hashing with pairwise labels.
Hashing for Protein Structure Similarity Search Feature learning based deep supervised hashing with pairwise labels
Reference 21
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.109223Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 48456df1-5ec4-4897-b5b6-67ba3e1b6360 · outbound
This paper cites Hashnet: Deep learning to hash by continuation.
Hashing for Protein Structure Similarity Search Hashnet: Deep learning to hash by continuation
Reference 22
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.088739Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation c5d788e0-e4f3-4c81-a340-4de0d46ffde6 · outbound
This paper cites Hashing based answer selection.
Hashing for Protein Structure Similarity Search Hashing based answer selection
Reference 23
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.069765Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation a1ecbe72-9e64-47cf-aae1-52dc12026f23 · outbound
This paper cites Efficient passage retrieval with hashing for open-domain question answering.
Hashing for Protein Structure Similarity Search Efficient passage retrieval with hashing for open-domain question answering
Reference 24
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.049618Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation fa93477c-e5ff-4200-be2c-558a81383b3b · outbound
This paper cites Learning efficient hash codes for fast graph-based data similarity retrieval.IEEE Transactions on Image Processing, 30:6321–6334, 2021.
Hashing for Protein Structure Similarity Search Learning efficient hash codes for fast graph-based data similarity retrieval.IEEE Transactions on Image Processing, 30:6321–6334, 2021
Reference 25
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:03.031408Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation ad4aca74-aa49-43d5-b2ed-338c9b565b89 · outbound
This paper cites Robust deep learning–based protein sequence design using proteinmpnn.
Hashing for Protein Structure Similarity Search Robust deep learning–based protein sequence design using proteinmpnn
Reference 26
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.795192Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 9bf39edd-d986-4acc-8992-2e6f97f17e6a · outbound
This paper cites PiFold: Toward effective and efficient protein inverse folding.
Hashing for Protein Structure Similarity Search PiFold: Toward effective and efficient protein inverse folding
Reference 27
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.805983Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 529d6f92-1c47-487d-8f0e-3df97db7f46d · outbound
This paper cites Lozano, Payel Das, and Jian Tang.
Hashing for Protein Structure Similarity Search Lozano, Payel Das, and Jian Tang
Reference 28
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:02.999830Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 992a6adb-367b-47d7-9b81-f6f7bf49d336 · outbound
This paper cites Representation Learning with Contrastive Predictive Coding.
Hashing for Protein Structure Similarity Search Representation Learning with Contrastive Predictive Coding
Reference 29
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.818697Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d43c0c39-5dbc-47c5-b8d6-9a6f2d23b605 · outbound
This paper cites Contrastive Representation Learning for 3D Protein Structures.
Hashing for Protein Structure Similarity Search Contrastive Representation Learning for 3D Protein Structures
Reference 30
- Resolution
- unresolved
- no resolver link, observed 2026-08-12T21:51:02.824662Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation bace76e8-fce6-44a5-9a3e-35ba5b38c09e · outbound
This paper cites How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics, 26(7):889–895, 2010.
Hashing for Protein Structure Similarity Search How significant is a protein structure similarity with tm-score= 0.5? Bioinformatics, 26(7):889–895, 2010
Reference 31
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:02.982835Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Observation 790b4d6f-d518-4f49-acd0-50d6630b181b · outbound
This paper cites The protein data bank.
Hashing for Protein Structure Similarity Search The protein data bank
Reference 32
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-12T21:51:02.964262Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.
Pith citing papers
No inbound Pith citation observations are available.