Pith. sign in

Paper Citation Record · LEDGER

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

As of 17 August 2026, this Paper Citation Record lists 49 of 49 outbound references and 2 inbound Pith citation observations for arXiv:2412.03595.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.03595 v1

Coverage vector

measured 49 of 49 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T06:03:52.609965Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-16T00:42:16.741414Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-16T00:42:17.011916Z

Reference resolution

49 of 49 outbound references displayed

  • verified exact1
  • verified fuzzy38
  • unresolved10
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 15595513-cc1e-4ae9-b21b-55cb53cc29fc · outbound

This paper cites A.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Parrinello, M

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.380656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.382793Z digest=sha256:2b31f934465e25d17516b15507ee0bb400c7d076439a1df16b309ed03f718142

Observation 351ca2f6-f59d-45ae-9edd-ea0622220bd6 · outbound

This paper cites A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.366025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.388119Z digest=sha256:763d433576835067ac5baaf41d8435f929cf41bfcd4a335766936569694c5c1f

Observation 41a70cef-423a-489d-9c9c-73a4c494d7c2 · outbound

This paper cites COVID-19 and the academy: It is time for going digital.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem COVID-19 and the academy: It is time for going digital

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.350389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.392654Z digest=sha256:f5bded38728ecb5564378049ea156ddb19f8775e8d3ede72103fb3dc922452ea

Observation db7a7676-c8ca-4f45-9f7a-ef22ceb8209b · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 4

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.334582Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.397175Z digest=sha256:dbcc2dc01fe91d324d642ea2f8bfc774d3d49a3b327ba7ba08ef9ef06f0216e5

Observation d737dbf0-5fef-4cbb-8dd0-c2664ac14e53 · outbound

This paper cites In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.318750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.402310Z digest=sha256:72275855836b854ca9b75820025f67c2a8cc1d01302106e4be787a577a4fcd29

Observation cd9b7e80-8ab3-48e7-a4ef-9dfc630706f8 · outbound

This paper cites In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.303629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.406649Z digest=sha256:578b860bf2f2a709f19aa3675eb284628a7cb54b3835d20ea71e6429debbba4a

Observation c84ef4cc-0024-4707-85d3-674a8a27c87d · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.288123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.411679Z digest=sha256:67f189dd1634c0d8ff3acf7718f6d9ea31bd0bfcab14369d8581c88979dc2671

Observation 277041b0-5d68-4d7f-8663-d3231d80bf7f · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.272464Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.416473Z digest=sha256:3bfb46a7000555986da38ff74b0a0378804b4706c5f6209afd60dc012eae38de

Observation 26a4c450-7e2b-4944-9ae3-7d1065f831c1 · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.258607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.421096Z digest=sha256:bc383156dc1683ede910b3d6b4b91735de3eb0dc854f3a2f8eb40c3c1e4bf51e

Observation e8b4ec77-aa0c-4e93-8daa-5238ed18fa6e · outbound

This paper cites A.; Giberti, F.; Sosso, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Giberti, F.; Sosso, G

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.244010Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.426249Z digest=sha256:705a664e171cc8e41cdd006297e9e4a62e491e852679aeaab96c60fac330bb79

Observation e7fc1088-42f1-4857-bbd7-b30586bb2477 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 11

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.228258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.431013Z digest=sha256:71654d9e3dcb912aa7aa84814698ed1c4c427508f09082b990c4a0a106c8fccb

Observation e5bb3ad7-c490-4f30-af7f-ec7fe743a973 · outbound

This paper cites Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.213381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.435996Z digest=sha256:bd22581c593227fb96a797b1429ec6af646f52765a73499985e3afc7e3a2e754

Observation da0cc756-4cdd-4d88-afd2-183dcaf7ad57 · outbound

This paper cites Escaping free-energy minima.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Escaping free-energy minima

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.440893Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.440893Z digest=sha256:8a8bff46baabfcd05f4847968338ab44aa28b0bfef144d916799cc241a0306e9

Observation 3d759ba4-58a8-4d0d-a94a-48135d0b67b4 · outbound

This paper cites Replica-exchange molecular dynamics method for protein folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Replica-exchange molecular dynamics method for protein folding

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.188771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.445476Z digest=sha256:99eb6805246e6a40d493ae8a2d29b610efc30bca0cd145c6460a537eae5e21cf

Observation a875991c-8f14-4c70-ae00-fb37f818c479 · outbound

This paper cites Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.174200Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.450030Z digest=sha256:184e2b3140cb152a86aa8109e4f01487319a32d8f744ea700990129ac8589724

Observation c194b737-fc23-4b12-99a6-8c7106b577a3 · outbound

This paper cites A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.159694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.454621Z digest=sha256:9d72188e5f288f4322a11b4f4344717735e81adee15ba85a919f1193fbba0fbe

Observation 1260fe96-1e30-4767-b9a0-904aef83e5f5 · outbound

This paper cites Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.459485Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.459485Z digest=sha256:d09f8929157f1429fe223e811dc00a1e852da2fa99bce55c81ae3381674221d1

Observation b2377515-6c34-46cd-b6ce-e60eac3ad915 · outbound

This paper cites Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.144847Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.465088Z digest=sha256:bc84f09d23fa72eaaeb9fa8d1d737addb5bb61c740b53805792b849b0ed5d769

Observation b1693999-7642-4437-b737-8b07ea7e3cdf · outbound

This paper cites L.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem L.; Parrinello, M

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.129983Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.469619Z digest=sha256:b4ee25b0260b458de5866471f5af5f09a2353a3450359077faf9cfa0e5006522

Observation 5e6bddc1-76c8-455b-a2b4-f49665a59afe · outbound

This paper cites Ligand binding free-energy calculations with funnel metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ligand binding free-energy calculations with funnel metadynamics

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.114722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.474430Z digest=sha256:e2ffdb3ff7149a75a025ea35e413bc0f944a56dbf9e261eb5eda8754d20ea954

Observation 54e97e7f-663f-4210-a968-1b058a7d632c · outbound

This paper cites Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.099378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.480661Z digest=sha256:4f2995be7871caff910253969ab4e9dd34dd9310121ce10402cbb49b3aa88e9f

Observation d2510c59-ce28-466e-8609-67cac29c16e5 · outbound

This paper cites D.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem D.; Voth, G

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.084750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.485357Z digest=sha256:4bdeb13a5a9243140d5915c59f1626b316a40b2306a9bbeaede90418856bca95

Observation 6653ca65-8f5d-401d-a8ac-15d2be36110e · outbound

This paper cites Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.070984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.489824Z digest=sha256:fcedbff177b91ac519f832ef678e6490f2a7aeb2c5379499d807b2efcfbc6965

Observation a45970b0-1cc9-42c0-9b1d-51200ae0ced3 · outbound

This paper cites Molecular dynamics simulations of solutions at constant chemical potential.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Molecular dynamics simulations of solutions at constant chemical potential

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.057340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.495962Z digest=sha256:8c926ea922b0d2b47c272d359909c55157ccb3d4247a63b374f58c849066c2b6

Observation 2bc71ef7-8488-4334-bcfc-844c8a077ad0 · outbound

This paper cites Path Finding on High-Dimensional Free Energy Landscapes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Path Finding on High-Dimensional Free Energy Landscapes

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.042655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.500732Z digest=sha256:a184a6703bb928213d8fed3dd8dafa4a793165f047b8cd7a1ba23064dcc9272d

Observation 648a9edd-c842-49fb-86ec-d1377646baf4 · outbound

This paper cites Hamiltonian replica exchange in GROMACS: a flexible implementation.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Hamiltonian replica exchange in GROMACS: a flexible implementation

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.027462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.505600Z digest=sha256:7e783e3a0943b9ed393e3ce8a28c6a25b77b9765f6fcc1cb62aac7a8f78dd324

Observation edbf6073-3e45-440a-965d-cde206fbd249 · outbound

This paper cites Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.012177Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.510109Z digest=sha256:dff716ef009dfd5258176db0b57fd6c9093ff68fa618f477a89399ca692ff6fe

Observation 1181888f-b425-4f54-b942-21c14b9e2935 · outbound

This paper cites M.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Parrinello, M

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.996444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.515132Z digest=sha256:dcb6d08b71e9e81744a42bbbaf2ebcdc1d909fc1ee0da53b3efbe14846a1579a

Observation 1fcc0818-b463-44ec-abd4-9bca1c4e0952 · outbound

This paper cites A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.981826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.520373Z digest=sha256:a9b3798d2fecf719c1c4112cf505689162b8ff0cc43f06839c2442ba2c368f7b

Observation 0d70dc51-6edb-426c-b94e-9f2b3d034dec · outbound

This paper cites J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.966427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.524624Z digest=sha256:f75a39ed1e4c02cccfb79d250f3736c936821c8768e6e016cddb61aaae18f1bf

Observation eb2bd7fb-4db9-415e-bdc3-320b0feb6b41 · outbound

This paper cites E.; Thomasen, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Thomasen, F

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.951338Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.529301Z digest=sha256:f0f216601ebe4d5aa09e99ade529a9906d31f90bdec27bbbf41b2f0f0b97ca63

Observation 313a7096-e459-4821-b510-4878f70da6c1 · outbound

This paper cites Multi-replica biased sampling for photoswitchable -conjugated polymers.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Multi-replica biased sampling for photoswitchable -conjugated polymers

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.936632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.533313Z digest=sha256:078111b7d02b5b50f23b9f4cd57f3deb922ba8fa5f68776f677ebc199fb86773

Observation 4bfef365-a492-4fc3-a0f7-c368b4582778 · outbound

This paper cites Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.920857Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.537346Z digest=sha256:593db09ba961b9c843a1b6ac032b847024be9fe66e5b63310979f1ae5996e7ba

Observation 1c2ea486-2516-49fd-870b-f3f95151fca6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 34

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.905814Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.541276Z digest=sha256:414af9579988d1ed5496635cb0b88df81460c945f89385e9c4d45f9208547ace

Observation 76595791-909f-4537-91fc-6223ce75d57e · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 35

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.892152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.545188Z digest=sha256:a850001003b6bb2d3aa0dadf4a3564bdc9e52f3a005b48172ed323fcb7ec1471

Observation 9d390169-48f7-4e0e-a7ff-e2d106a474a6 · outbound

This paper cites F.; Rotskoff, G.; Parrinello, M.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Rotskoff, G.; Parrinello, M.; Voth, G

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.878447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.549593Z digest=sha256:7d9883b4bd6070e544b4fb7488792eddab7f01561e93219f4f76b6ca3a52a859

Observation a9cc22f3-e003-4ee4-adc0-aa913be707d7 · outbound

This paper cites Finding multiple reaction pathways of ligand unbinding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Finding multiple reaction pathways of ligand unbinding

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.863526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.554044Z digest=sha256:709a41b5fc55350d7ccc3971bdcca196dc546a2b0283b343b4447e4b2866f3e5

Observation c8d149b5-e4cb-4117-81db-f0e215cb2d81 · outbound

This paper cites Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.847809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.558150Z digest=sha256:4f5ae0b1f08ad10fc42ec6338d43df76b76746b67fce3ba9699252f425dda8a5

Observation 7f905a28-be1b-47af-ae2e-f86b379d9f4d · outbound

This paper cites E.; Cavalli, A.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Cavalli, A

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.832245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.562400Z digest=sha256:012147c42e91afad1c20a5baf624a75d05d0e24efef48d34be050a464dd10c0a

Observation f98770bf-cab3-48b3-bdb7-de210e4396c6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.816166Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.566977Z digest=sha256:3f6e24db87f3195abefaa44e30e57ec8d550169662333e3e9e3b13daab643bc8

Observation 37e85900-1b3b-469f-85c5-c67b0ef2fc53 · outbound

This paper cites F.; Zhang, S.; Vendruscolo, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Zhang, S.; Vendruscolo, M

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.800285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.571758Z digest=sha256:dddff01ab1f0125e14c4c044f65f7f020959bb74c0bb3dfcbb22b0ea0484e087

Observation 5996cef8-547b-4e01-a5f4-9c5e963ecbbe · outbound

This paper cites PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.784755Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.576544Z digest=sha256:97e0a67d3d1868f08d3ec74ec554758bc09efefea4d9d126f145c4c6d519c20a

Observation 066867cc-7f81-4955-8716-974078a20c67 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 43

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.768052Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.581311Z digest=sha256:6cdbbf549b43c480037bf4f73eebef52b33c2b7b85cfd2c68568004d774839ad

Observation 07ae51d5-cdb2-4bf7-98b8-c56c60b8bf49 · outbound

This paper cites M.; Pietrucci, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Pietrucci, F

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.754035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.585947Z digest=sha256:ca2a9412653c383197f46fd7eba24c3408823130bc6babf724a959eb403357da

Observation 37757052-a364-4711-98bf-b1afcab8853d · outbound

This paper cites Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.740450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.590746Z digest=sha256:62140eba1b239afc5f2a41028a95130f12ed362a96cf557a1f517ce684abbac9

Observation c2478e29-a734-494b-bf2a-4f0183f9dabe · outbound

This paper cites Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations

Reference 46

Resolution
verified exact
local_arxiv, observed 2026-08-12T06:03:52.676747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.595499Z digest=sha256:4ce328af1f3b62cbe1ae40c9c3e158e8ec8753847884c76eec33b77b62079198

Observation 4b392386-89c9-4858-b460-b436f9d64844 · outbound

This paper cites A Bias-Exchange Approach to Protein Folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Bias-Exchange Approach to Protein Folding

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.725572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.600371Z digest=sha256:e270aabeac3600758f69aff539ad82ecac5d9809720bae7b7e58d29a10c3eac9

Observation f995c583-f514-4de4-b654-7dd3dfb9f9a6 · outbound

This paper cites V.; Garey, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem V.; Garey, M

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.710051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.605096Z digest=sha256:88e5508a67e1cc017645a76c5ae38db14173f0160b747ff3b699913c8115cb39

Observation bf5855c6-a22b-4492-aeea-a913f61834e6 · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem The need to implement FAIR principles in biomolecular simulations

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.609965Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.609965Z digest=sha256:2f5a7fc0ef45f4b53fb70733f58d80838df5d672f54853899d788b493998fc84

Pith citing papers

Observation 78feb186-6547-4b95-a6f3-ba126d8e0330 · inbound

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques cites this paper.

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 168

Resolution
unresolved
no resolver link, observed 2026-08-10T23:21:30.420589Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-10T23:21:30.420589Z digest=sha256:8b129936773a7bc30755da3b85e4217e7cd44e8be12f222291b9f7588af66e05

Observation 7e34ac8a-4a9f-494a-b863-113ea7b51d1f · inbound

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations cites this paper.

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 94

Resolution
verified exact
local_arxiv, observed 2026-08-16T00:42:17.020606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-16T00:42:16.741414Z digest=sha256:dfa4029d53d5ec53c925e250fbde27c096a5de55d7e3f214ac71361345ab05e5