Paper Citation Record · LEDGER

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification

As of 22 August 2026, this Paper Citation Record lists 18 of 18 outbound references and 0 inbound Pith citation observations for arXiv:2412.06378.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.06378 v1

Coverage vector

measured 18 of 18 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-11T19:47:16.542637Z

measured 18 of 18 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-22T06:32:14.747728+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

18 of 18 outbound references displayed

verified exact0
verified fuzzy14
unresolved4
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation d13668cf-b804-4dce-ba58-fc42ba67c23d · outbound

This paper cites Fu et al., DNA analysis of an early modern human from Tianyuan Cave, China.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Fu et al., DNA analysis of an early modern human from Tianyuan Cave, China

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.849668Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 7cc05813-ac21-458e-8494-81baa2b83537 · outbound

This paper cites Dabney et al., Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Dabney et al., Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.834688Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation d0744307-f62e-4968-94a1-23e67acee151 · outbound

This paper cites Cell 184, 3256-3266.e3213 (2021).

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.819367Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 47a4db4a-23a8-410f-b385-15a56737416c · outbound

This paper cites Bai et al., Ancient genomes revealed the complex hu...ctions of the ancient western Tibetans current biology.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Bai et al., Ancient genomes revealed the complex hu...ctions of the ancient western Tibetans current biology

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.805645Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 6220877d-818f-4cb7-a547-9a7b28cd4e9c · outbound

This paper cites Lackner, N.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Lackner, N

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.790324Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation a4bcb13b-5b47-4740-88f8-a89fb155f4b2 · outbound

This paper cites Mafessoni et al., A high-coverage Neandertal genome from Chagyrskaya Cave.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Mafessoni et al., A high-coverage Neandertal genome from Chagyrskaya Cave

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.774964Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 425c02a6-76dc-44bb-888c-9b24dbb1d78e · outbound

This paper cites Devièse et al.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Devièse et al

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.759748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation b9d6a971-afbd-4002-8e90-82a66479488d · outbound

This paper cites Kanton et al., Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Kanton et al., Organoid single-cell genomic atlas uncovers human-specific features of brain development

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.744677Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 6ca3d7f3-d4ab-4cd0-a8df-a0bb3a16ba0b · outbound

This paper cites Douka et al.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Douka et al

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.729554Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 43497ca2-9e20-4262-a933-ca8854038ffe · outbound

This paper cites Wang et al., 12 Huma n genetic history on the Tibetan Plateau in the past 5100 years.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Wang et al., 12 Huma n genetic history on the Tibetan Plateau in the past 5100 years

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.713942Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation e464bda8-7f98-455b-b316-899fa7b968a9 · outbound

This paper cites an unresolved cited work.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Unresolved cited work

Reference 11

Resolution: unresolved; raw_fallback, observed 2026-08-11T19:47:16.698383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation aa7895ee-2fdd-44b5-8c55-0d4822ff7562 · outbound

This paper cites an unresolved cited work.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-11T19:47:16.682327Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation af6331ae-1dca-484d-be55-6f3dffa7b4f1 · outbound

This paper cites an unresolved cited work.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Unresolved cited work

Reference 13

Resolution: unresolved; raw_fallback, observed 2026-08-11T19:47:16.664555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 98e2297c-5be9-412d-b9bb-afde6ba6d53f · outbound

This paper cites Lindalh, Instability and decay of the primary structure of DNA.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Lindalh, Instability and decay of the primary structure of DNA

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.647168Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 21b005c5-a948-4dab-b9c1-bfbcb822f0b7 · outbound

This paper cites an unresolved cited work.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Unresolved cited work

Reference 15

Resolution: unresolved; raw_fallback, observed 2026-08-11T19:47:16.631886Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 53c91d62-6a94-45c0-8cd7-fda8053813ff · outbound

This paper cites Zheng, A.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Zheng, A

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.616365Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation 16a5676f-1002-41f7-ad2b-a83d1baf714a · outbound

This paper cites Bomfleur, S.

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Bomfleur, S

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.600783Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Observation d95e25df-eff4-4c33-b864-32a9d36f6bda · outbound

This paper cites Zhang et al., Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau Science 370, 584-587 (2020).

Emerging Challenges in Molecular Paleontology: Misapplication of Environmental DNA Fragments and Misconception of Deamination as a Key Criterion for In Situ DNA Identification Zhang et al., Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau Science 370, 584-587 (2020)

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T19:47:16.582590Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

Pith citing papers

No inbound Pith citation observations are available.