Paper Citation Record · LEDGER

Topological analysis reveals multiple pathways in molecular dynamics

As of 11 August 2026, this Paper Citation Record lists 54 of 54 outbound references and 0 inbound Pith citation observations for arXiv:2412.20580.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.20580 v2

Coverage vector

measured 54 of 54 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-10T23:21:53.821533Z

measured 54 of 54 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-11T06:34:44.6726+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

54 of 54 outbound references displayed

verified exact10
verified fuzzy21
unresolved22
parse uncertain0
malformed identifier0
metadata mismatch1

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 5e7edf8a-87a1-4286-8299-c95a86acd38b · outbound

This paper cites Karplus \ and\ author J.

Topological analysis reveals multiple pathways in molecular dynamics Karplus \ and\ author J

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.526573Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 7ad72b0d-6e1b-49d8-8dc1-4fe623b21291 · outbound

This paper cites Frenkel \ and\ author B.

Topological analysis reveals multiple pathways in molecular dynamics Frenkel \ and\ author B

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.505798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 6c816f24-9980-490d-82f0-994b7f89de43 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 3

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.492698Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation c5c83825-bba1-4dcd-bae7-f05c435fd6ab · outbound

This paper cites Laio \ and\ author M.

Topological analysis reveals multiple pathways in molecular dynamics Laio \ and\ author M

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.481296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 39625398-c6af-4f56-8555-3a823169a5dd · outbound

This paper cites Dellago , author P.

Topological analysis reveals multiple pathways in molecular dynamics Dellago , author P

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.467862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 14f3f113-aa71-426b-9601-afcbf8854228 · outbound

This paper cites Deuflhard \ and\ author M.

Topological analysis reveals multiple pathways in molecular dynamics Deuflhard \ and\ author M

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.453611Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation db86145d-c02a-4631-81a4-61696bc49ce7 · outbound

This paper cites Weber ,\ title Meshless Methods in Conformation Dynamics ,\ @noop Ph.D.

Topological analysis reveals multiple pathways in molecular dynamics Weber ,\ title Meshless Methods in Conformation Dynamics ,\ @noop Ph.D

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.438854Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 86a778cb-d83a-4612-8a79-f2903e40489a · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 8

Resolution: verified exact; doi, observed 2026-08-10T23:21:54.023968Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 8180fcdf-d8fe-4d50-b445-b8c4c67a64ca · outbound

This paper cites Sikorski , author E.

Topological analysis reveals multiple pathways in molecular dynamics Sikorski , author E

Reference 9

Resolution: verified exact; doi, observed 2026-08-10T23:21:54.011327Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation cf822332-4290-4008-8574-3cefe373642e · outbound

This paper cites Donati , author C.

Topological analysis reveals multiple pathways in molecular dynamics Donati , author C

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.650391Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f123d2d4-9836-4ae7-80b3-78f57991fc16 · outbound

This paper cites A fuzzy-set theoretical framework for computing exit rates of rare events in potential-driven diffusion processes.

Topological analysis reveals multiple pathways in molecular dynamics A fuzzy-set theoretical framework for computing exit rates of rare events in potential-driven diffusion processes

Reference 11

Resolution: metadata mismatch; local_arxiv, observed 2026-08-10T23:21:54.042302Z

Source-reported events for the cited work

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Observation ee50a0ab-7f91-4bcd-87b1-2f313f8c4523 · outbound

This paper cites Singh , author F.

Topological analysis reveals multiple pathways in molecular dynamics Singh , author F

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.658715Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d58dab5e-7a7a-4aa7-a5a1-98478697cf7c · outbound

This paper cites Lum , author G.

Topological analysis reveals multiple pathways in molecular dynamics Lum , author G

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.426233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 37b4d120-0e54-432e-b83f-27efe9752172 · outbound

This paper cites Vardar , author A.

Topological analysis reveals multiple pathways in molecular dynamics Vardar , author A

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.414283Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 39b2654f-fc3f-4a38-852a-14b0167ba752 · outbound

This paper cites Tang , author M.

Topological analysis reveals multiple pathways in molecular dynamics Tang , author M

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.402975Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e076db44-282f-413e-9b61-31edc3a5a621 · outbound

This paper cites Lei , author C.

Topological analysis reveals multiple pathways in molecular dynamics Lei , author C

Reference 16

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.991493Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 8dcbaae1-529b-42ac-be43-dc88902bc46d · outbound

This paper cites Lindorff-Larsen , author S.

Topological analysis reveals multiple pathways in molecular dynamics Lindorff-Larsen , author S

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.392133Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation ca180eb4-73b1-4a7e-baee-9be7a8c6b218 · outbound

This paper cites Marinari \ and\ author G.

Topological analysis reveals multiple pathways in molecular dynamics Marinari \ and\ author G

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.681628Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fec52892-060f-461a-9e04-8ae1cbd26d4b · outbound

This paper cites Sugita \ and\ author Y.

Topological analysis reveals multiple pathways in molecular dynamics Sugita \ and\ author Y

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.380381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 2161a323-7c05-4e6e-8e87-64e8d1dcdb32 · outbound

This paper cites Souaille \ and\ author B.

Topological analysis reveals multiple pathways in molecular dynamics Souaille \ and\ author B

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.689412Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c2c8d140-343c-4ae4-8016-5d19edf43814 · outbound

This paper cites Huber , author A.

Topological analysis reveals multiple pathways in molecular dynamics Huber , author A

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.369060Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 0aa0681c-9ad6-4e39-9bf6-52f6fcf57e93 · outbound

This paper cites Laio \ and\ author M.

Topological analysis reveals multiple pathways in molecular dynamics Laio \ and\ author M

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.357998Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation a315d56b-8de5-484b-ad83-7fdfb66cd2c5 · outbound

This paper cites Barducci , author G.

Topological analysis reveals multiple pathways in molecular dynamics Barducci , author G

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.346717Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 588652d3-b5b8-4fb8-8ccf-ef5e5c4bb6e6 · outbound

This paper cites von Mises \ and\ author H.

Topological analysis reveals multiple pathways in molecular dynamics von Mises \ and\ author H

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.334722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation d03a11d7-21b7-481c-9036-4d88056d66ec · outbound

This paper cites Weber ,\ title title Implications of PCCA+ in Molecular Simulation , \ @noop journal journal Computation \ volume 6 ( year 2018 ) NoStop.

Topological analysis reveals multiple pathways in molecular dynamics Weber ,\ title title Implications of PCCA+ in Molecular Simulation , \ @noop journal journal Computation \ volume 6 ( year 2018 ) NoStop

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.321461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 60b3786c-6782-4871-9427-1145d31dffad · outbound

This paper cites Keller , author X.

Topological analysis reveals multiple pathways in molecular dynamics Keller , author X

Reference 26

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.962938Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 9946dc1a-03c9-46e5-b07a-6b531f7606fd · outbound

This paper cites Lemke \ and\ author B.

Topological analysis reveals multiple pathways in molecular dynamics Lemke \ and\ author B

Reference 27

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.950476Z

Source-reported events for the cited work

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Observation bf5da1fe-1d62-4e73-8d2b-b575cb936ab9 · outbound

This paper cites Lemke \ and\ author B.

Topological analysis reveals multiple pathways in molecular dynamics Lemke \ and\ author B

Reference 28

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.937513Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 97313253-4638-4c4f-99ad-9717567f1fbb · outbound

This paper cites Leimkuhler \ and\ author C.

Topological analysis reveals multiple pathways in molecular dynamics Leimkuhler \ and\ author C

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.309221Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 855d68e3-1410-4537-9fc1-b39b44822865 · outbound

This paper cites Paszke , author S.

Topological analysis reveals multiple pathways in molecular dynamics Paszke , author S

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.297329Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation cae9ec0b-546a-4dd5-8bb4-b209a990ca07 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 31

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.285708Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation b22e0ac5-44a8-4794-8a49-09671f4d50cb · outbound

This paper cites Eastman , author J.

Topological analysis reveals multiple pathways in molecular dynamics Eastman , author J

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.736934Z

Source-reported events for the cited work

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Observation bb28d190-368d-414c-91f4-1302ccd6bc63 · outbound

This paper cites Wang , author R.

Topological analysis reveals multiple pathways in molecular dynamics Wang , author R

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.740878Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3a2ed193-fea0-47d8-922e-b0a68c4b65af · outbound

This paper cites \ Wang , author T.

Topological analysis reveals multiple pathways in molecular dynamics \ Wang , author T

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.273436Z

Source-reported events for the cited work

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Observation cd1ca957-fe68-4c4a-8e80-4aeb4952bda2 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 35

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.259628Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 43b3876a-1e94-4b2d-bc87-c79ed784cd46 · outbound

This paper cites Darden , author D.

Topological analysis reveals multiple pathways in molecular dynamics Darden , author D

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.751564Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d9dfbb15-f483-414a-aa4f-f0bc5906e974 · outbound

This paper cites Floquet , author S.

Topological analysis reveals multiple pathways in molecular dynamics Floquet , author S

Reference 37

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.900647Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 930ff822-1eb7-422a-a283-8f487227843d · outbound

This paper cites Donati \ and\ author B.

Topological analysis reveals multiple pathways in molecular dynamics Donati \ and\ author B

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T23:21:54.247632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 4505ae58-cf82-4fb0-8234-59b9477946e2 · outbound

This paper cites Giraldo-Barreto , author S.

Topological analysis reveals multiple pathways in molecular dynamics Giraldo-Barreto , author S

Reference 39

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.888700Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 8f8be841-25ef-48c8-88f2-1efb2421fe4d · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 40

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.234527Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 7100d04c-6b68-4023-9558-d11ec6fac4a6 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 41

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.220945Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation c5b1696d-9c56-4989-bee9-5a2f97c35a1c · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.207834Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation d497e025-fd79-4a64-869b-895543b1a19b · outbound

This paper cites \ Prinz , author H.

Topological analysis reveals multiple pathways in molecular dynamics \ Prinz , author H

Reference 43

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e3b4bd00-9cc3-4b34-a2e2-e1b46d0d28e9 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 44

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation be471221-66bb-4efd-9ee8-d8a51d44195f · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 45

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.179597Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 887db9f6-6738-442d-8102-7cab69c86ff7 · outbound

This paper cites an unresolved cited work.

Topological analysis reveals multiple pathways in molecular dynamics Unresolved cited work

Reference 46

Resolution: unresolved; raw_fallback, observed 2026-08-10T23:21:54.166414Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 36e4452f-21bb-4cec-b713-581d44aa5596 · outbound

This paper cites Harada \ and\ author A.

Topological analysis reveals multiple pathways in molecular dynamics Harada \ and\ author A

Reference 47

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.868541Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 2ab01304-2dcd-4a4c-a661-d0fef8a99b44 · outbound

This paper cites Wang , author P.

Topological analysis reveals multiple pathways in molecular dynamics Wang , author P

Reference 48

Resolution: verified exact; doi, observed 2026-08-10T23:21:53.856410Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 4e03c92a-8b50-47de-aac8-96c5ddc8a941 · outbound

This paper cites merlin.mbs aapmrev4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked.

Topological analysis reveals multiple pathways in molecular dynamics merlin.mbs aapmrev4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.799043Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d76ea705-a2cc-484c-9534-4a32966bb825 · outbound

This paper cites merlin.mbs aipauth4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked.

Topological analysis reveals multiple pathways in molecular dynamics merlin.mbs aipauth4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked

Reference 50

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.803691Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 900188a6-470f-40ea-8372-47473b867b6a · outbound

This paper cites merlin.mbs aipnum4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked.

Topological analysis reveals multiple pathways in molecular dynamics merlin.mbs aipnum4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked

Reference 51

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.808063Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 83f5f60d-2b9a-4b62-bf0e-e5b697679591 · outbound

This paper cites merlin.mbs apsrev4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked.

Topological analysis reveals multiple pathways in molecular dynamics merlin.mbs apsrev4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked

Reference 52

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.812690Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e04cf156-525f-422b-845f-776022d3dcc4 · outbound

This paper cites merlin.mbs apsrmp4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked.

Topological analysis reveals multiple pathways in molecular dynamics merlin.mbs apsrmp4-1.bst 2010-07-25 4.21a (PWD, AO, DPC) hacked

Reference 53

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.817224Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 77c694c5-54c1-423f-89e5-246a7e899c89 · outbound

This paper cites write newline.

Topological analysis reveals multiple pathways in molecular dynamics write newline

Reference 54

Resolution: unresolved; no resolver link, observed 2026-08-10T23:21:53.821533Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.