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Paper Citation Record · LEDGER

Foundation Models for AI-Enabled Biological Design

As of 19 August 2026, this Paper Citation Record lists 66 of 66 outbound references and 0 inbound Pith citation observations for arXiv:2505.11610.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.11610 v1

Coverage vector

measured 66 of 66 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T20:54:23.859103Z

measured 66 of 66 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

66 of 66 outbound references displayed

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External citation measurements

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Outbound references

Observation 5d9476c3-071d-48a8-a081-2f6d05078fc9 · outbound

This paper cites National Institute of Gen- eral Medical Sciences, U.S.

Foundation Models for AI-Enabled Biological Design National Institute of Gen- eral Medical Sciences, U.S

Reference 1

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Observation 9d8a89ee-cd51-48a5-a700-6c1c71ac8a79 · outbound

This paper cites Collins and Leslie Fink.

Foundation Models for AI-Enabled Biological Design Collins and Leslie Fink

Reference 2

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Observation c5abd4d9-d129-41be-81d2-b642ed99d952 · outbound

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Foundation Models for AI-Enabled Biological Design Unresolved cited work

Reference 3

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Observation 3615b171-4a04-4214-a2a4-c22e0ca2697a · outbound

This paper cites The structural genomics consortium: a knowledge platform for drug discovery: a summary.

Foundation Models for AI-Enabled Biological Design The structural genomics consortium: a knowledge platform for drug discovery: a summary

Reference 4

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Source-reported events for the cited work

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Observation 460a507e-44c2-4693-8cd8-894f835f3c92 · outbound

This paper cites Protein data bank.Nature New Biol, 233(223):10–1038, 1971.

Foundation Models for AI-Enabled Biological Design Protein data bank.Nature New Biol, 233(223):10–1038, 1971

Reference 5

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Source-reported events for the cited work

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Observation ffb037b6-7add-4304-a4d9-5021e43f2272 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021.

Foundation Models for AI-Enabled Biological Design Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021

Reference 6

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Source-reported events for the cited work

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Observation e9fb532d-07c1-44ba-8636-9971ee8885c1 · outbound

This paper cites The role of ai in drug discovery: chal- lenges, opportunities, and strategies.Pharmaceuticals, 16(6):891, 2023.

Foundation Models for AI-Enabled Biological Design The role of ai in drug discovery: chal- lenges, opportunities, and strategies.Pharmaceuticals, 16(6):891, 2023

Reference 7

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Source-reported events for the cited work

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Observation 6e9fffda-b671-4634-a33b-d6f75cbff5db · outbound

This paper cites Synthetic biology 2020–2030: six commercially-available products that are changing our world.Nature Communications, 11(1):1–6, 2020.

Foundation Models for AI-Enabled Biological Design Synthetic biology 2020–2030: six commercially-available products that are changing our world.Nature Communications, 11(1):1–6, 2020

Reference 8

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Source-reported events for the cited work

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Observation 862f2a4b-964f-480c-b076-625edf4aa3ac · outbound

This paper cites Materials design by synthetic biol- ogy.Nature Reviews Materials, 6(4):332–350, 2021.

Foundation Models for AI-Enabled Biological Design Materials design by synthetic biol- ogy.Nature Reviews Materials, 6(4):332–350, 2021

Reference 9

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Observation 6abcb241-1ba0-4fa2-ad5f-db9fdcf89a90 · outbound

This paper cites On the opportunities and risks of foundation models.arXiv e-prints, pages arXiv–2108, 2021.

Foundation Models for AI-Enabled Biological Design On the opportunities and risks of foundation models.arXiv e-prints, pages arXiv–2108, 2021

Reference 10

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Source-reported events for the cited work

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Observation 34923e04-b289-40b4-b346-167402d5fb82 · outbound

This paper cites Attention Is All You Need.

Foundation Models for AI-Enabled Biological Design Attention Is All You Need

Reference 11

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Source-reported events for the cited work

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Observation 548726c4-fa43-487b-889c-0255d3cde923 · outbound

This paper cites Efficiently Modeling Long Sequences with Structured State Spaces.

Foundation Models for AI-Enabled Biological Design Efficiently Modeling Long Sequences with Structured State Spaces

Reference 12

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Source-reported events for the cited work

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Observation 163eb2d1-f550-4f67-82ad-6abdea992bf8 · outbound

This paper cites Mamba: Linear-Time Sequence Modeling with Selective State Spaces.

Foundation Models for AI-Enabled Biological Design Mamba: Linear-Time Sequence Modeling with Selective State Spaces

Reference 13

Resolution
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Source-reported events for the cited work

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Observation 6ea4ff69-483f-471a-b901-e1d4325beae0 · outbound

This paper cites Diffusion-lm im- proves controllable text generation.Advances in Neu- ral Information Processing Systems, 35:4328–4343, 2022.

Foundation Models for AI-Enabled Biological Design Diffusion-lm im- proves controllable text generation.Advances in Neu- ral Information Processing Systems, 35:4328–4343, 2022

Reference 14

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Observation c660c3f1-a10e-4e8e-ae4c-10ff85920269 · outbound

This paper cites Argmax flows and multinomial diffusion: Learning categorical distribu- tions.Advances in Neural Information Processing Sys- tems, 34:12454–12465, 2021.

Foundation Models for AI-Enabled Biological Design Argmax flows and multinomial diffusion: Learning categorical distribu- tions.Advances in Neural Information Processing Sys- tems, 34:12454–12465, 2021

Reference 15

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Source-reported events for the cited work

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Observation e666f195-f243-4fc9-b4ab-f298bc6ae57f · outbound

This paper cites Autoregressive diffusion models.

Foundation Models for AI-Enabled Biological Design Autoregressive diffusion models

Reference 16

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Source-reported events for the cited work

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Observation f96c92e1-6d62-49ab-b067-c8af50f79c5d · outbound

This paper cites Molgpt: molecular generation using a transformer-decoder model.Journal of Chemical In- formation and Modeling, 62(9):2064–2076, 2021.

Foundation Models for AI-Enabled Biological Design Molgpt: molecular generation using a transformer-decoder model.Journal of Chemical In- formation and Modeling, 62(9):2064–2076, 2021

Reference 17

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Source-reported events for the cited work

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Observation 4769509f-1b76-4f33-b214-87072064ac46 · outbound

This paper cites Multi- constraint molecular generation based on conditional transformer, knowledge distillation and reinforcement learning.Nature Machine Intelligence, 3(10):914–922, 2021.

Foundation Models for AI-Enabled Biological Design Multi- constraint molecular generation based on conditional transformer, knowledge distillation and reinforcement learning.Nature Machine Intelligence, 3(10):914–922, 2021

Reference 18

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Source-reported events for the cited work

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Observation 69d2028a-1728-4b9d-9286-e9c31d0276c2 · outbound

This paper cites Molecule generation using transformers and policy gradient reinforcement learning.Scientific Re- ports, 13(1):8799, 2023.

Foundation Models for AI-Enabled Biological Design Molecule generation using transformers and policy gradient reinforcement learning.Scientific Re- ports, 13(1):8799, 2023

Reference 19

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Source-reported events for the cited work

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Observation 7fcf42b9-26b8-4901-9451-2337c9923eb1 · outbound

This paper cites Regression trans- former enables concurrent sequence regression and generation for molecular language modelling.Nature Machine Intelligence, 5(4):432–444, 2023.

Foundation Models for AI-Enabled Biological Design Regression trans- former enables concurrent sequence regression and generation for molecular language modelling.Nature Machine Intelligence, 5(4):432–444, 2023

Reference 20

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Observation d0c78860-a011-4263-888c-0bdd6da9fa45 · outbound

This paper cites Large language models generate func- tional protein sequences across diverse families.Na- ture Biotechnology, 41(8):1099–1106, 2023.

Foundation Models for AI-Enabled Biological Design Large language models generate func- tional protein sequences across diverse families.Na- ture Biotechnology, 41(8):1099–1106, 2023

Reference 21

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Observation a269ed69-3c18-4358-ab17-d0f83f8fddfb · outbound

This paper cites Progen2: exploring the boundaries of protein language models.Cell systems, 14(11):968–978, 2023.

Foundation Models for AI-Enabled Biological Design Progen2: exploring the boundaries of protein language models.Cell systems, 14(11):968–978, 2023

Reference 22

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Source-reported events for the cited work

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Observation 92586758-c95f-40e2-8311-ce44f1a5a5a5 · outbound

This paper cites Protgpt2 is a deep unsupervised language model for protein design.Nature communications, 13(1):4348, 2022.

Foundation Models for AI-Enabled Biological Design Protgpt2 is a deep unsupervised language model for protein design.Nature communications, 13(1):4348, 2022

Reference 23

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Observation 39f91937-4edf-412a-b663-efc1442b5177 · outbound

This paper cites Generalized biomolecular modeling and design with rosettafold all- atom.Science, 384(6693):eadl2528, 2024.

Foundation Models for AI-Enabled Biological Design Generalized biomolecular modeling and design with rosettafold all- atom.Science, 384(6693):eadl2528, 2024

Reference 24

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Observation 15d147e1-8ac9-4da0-92c1-001432fc1897 · outbound

This paper cites Protein design with guided discrete diffusion.

Foundation Models for AI-Enabled Biological Design Protein design with guided discrete diffusion

Reference 25

Resolution
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Source-reported events for the cited work

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Observation 4ae0e813-c481-4d5b-9792-ebdf0752b525 · outbound

This paper cites Sequence modeling and design from molecular to genome scale with evo.Science, 2024.

Foundation Models for AI-Enabled Biological Design Sequence modeling and design from molecular to genome scale with evo.Science, 2024

Reference 26

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Source-reported events for the cited work

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Observation 7323abef-2ecc-41e8-a917-ae14185c6345 · outbound

This paper cites Chemical language modeling with structured state space sequence models.Nature Communications, 15(1):6176, 2024.

Foundation Models for AI-Enabled Biological Design Chemical language modeling with structured state space sequence models.Nature Communications, 15(1):6176, 2024

Reference 27

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Observation d6671082-c53a-4ddc-89ad-b62d1da05766 · outbound

This paper cites Protmamba: a homology-aware but alignment-free protein state space model.bioRxiv, pages 2024–05, 2024.

Foundation Models for AI-Enabled Biological Design Protmamba: a homology-aware but alignment-free protein state space model.bioRxiv, pages 2024–05, 2024

Reference 28

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Observation 24f8ddcd-8a8d-44cb-b082-fe8e3eeb3ea5 · outbound

This paper cites reglm: Designing realistic regu- latory dna with autoregressive language models.

Foundation Models for AI-Enabled Biological Design reglm: Designing realistic regu- latory dna with autoregressive language models

Reference 29

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Source-reported events for the cited work

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Observation e04401fe-ecb4-421d-8bfb-92b7a4ab6aee · outbound

This paper cites Discdiff: Latent diffusion model for dna sequence gen- eration.CoRR, 2024.

Foundation Models for AI-Enabled Biological Design Discdiff: Latent diffusion model for dna sequence gen- eration.CoRR, 2024

Reference 30

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Source-reported events for the cited work

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Observation 903e5f2f-8ae6-4b08-b36a-545800cd14cd · outbound

This paper cites Dna-diffusion: Leveraging generative models for controlling chro- matin accessibility and gene expression via synthetic regulatory elements.

Foundation Models for AI-Enabled Biological Design Dna-diffusion: Leveraging generative models for controlling chro- matin accessibility and gene expression via synthetic regulatory elements

Reference 31

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Source-reported events for the cited work

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Observation 6707e6bf-0eab-4e19-8a04-e41c969e744b · outbound

This paper cites Hitting stride by degrees: Fine grained molecular generation via diffusion model.

Foundation Models for AI-Enabled Biological Design Hitting stride by degrees: Fine grained molecular generation via diffusion model

Reference 32

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Source-reported events for the cited work

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Observation 28d64d84-800e-4ee0-905c-81a324f233b9 · outbound

This paper cites Protein generation with evolutionary diffusion: se- quence is all you need.

Foundation Models for AI-Enabled Biological Design Protein generation with evolutionary diffusion: se- quence is all you need

Reference 33

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Source-reported events for the cited work

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Observation 4ecea4e3-e246-413d-9234-0b714f67a7ea · outbound

This paper cites Towards joint sequence-structure gen- eration of nucleic acid and protein complexes with se (3)-discrete diffusion.

Foundation Models for AI-Enabled Biological Design Towards joint sequence-structure gen- eration of nucleic acid and protein complexes with se (3)-discrete diffusion

Reference 34

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verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.625598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.671431Z digest=sha256:39dda5a7c2e0973eafd512b0cc6bafc3c3a66f025ce1cc93de76197cf19026f3

Observation f101e9a7-fd7a-4d8d-b707-caaa668c36ac · outbound

This paper cites Model-based reinforcement learning for biological se- quence design.

Foundation Models for AI-Enabled Biological Design Model-based reinforcement learning for biological se- quence design

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.603573Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.676676Z digest=sha256:9a6b5f4bc29c68f568a24c657e1469c0b149911e66bf6c9e652dab27883cc0e4

Observation fe5894fc-b26a-44f9-94b0-033c1a960cb6 · outbound

This paper cites nach0: Multimodal natural and chemical languages foundation model.

Foundation Models for AI-Enabled Biological Design nach0: Multimodal natural and chemical languages foundation model

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.581079Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.682726Z digest=sha256:53ebe27b7bf8e360327cbea3142299077be823327a36065d6b9df391c4f356b3

Observation 01cf6b41-f454-4d84-9936-841ea4aee8e7 · outbound

This paper cites Advancing biomolecular understanding and design following human instructions.

Foundation Models for AI-Enabled Biological Design Advancing biomolecular understanding and design following human instructions

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.688399Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.688399Z digest=sha256:9e86b85bb40aa63cf5bd9bef3c5fe0eb66e0315df0f763814d84e8e418fd6fc0

Observation 29979bb4-8de5-4b0e-914c-97aed6db5f65 · outbound

This paper cites Chatnt: A mul- timodal conversational agent for dna, rna and protein tasks.bioRxiv, pages 2024–04, 2024.

Foundation Models for AI-Enabled Biological Design Chatnt: A mul- timodal conversational agent for dna, rna and protein tasks.bioRxiv, pages 2024–04, 2024

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.555844Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.694355Z digest=sha256:232c4f7c258b4016605d5129cb84c072747299030f7be5a4b9ab87c7f0ab90c5

Observation a790ca7b-bd8b-4acd-b663-433b8d70278f · outbound

This paper cites Roformer: Enhanced trans- former with rotary position embedding.Neurocomput- ing, 568:127063, 2024.

Foundation Models for AI-Enabled Biological Design Roformer: Enhanced trans- former with rotary position embedding.Neurocomput- ing, 568:127063, 2024

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.534320Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.700381Z digest=sha256:e8694936a14b546d3f3faa754b010206548c3399bc4474d8f8ad3c4397d8ec07

Observation d862830d-428e-46eb-86d6-b595ceec0761 · outbound

This paper cites Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.Ad- vances in neural information processing systems, 36, 2024.

Foundation Models for AI-Enabled Biological Design Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.Ad- vances in neural information processing systems, 36, 2024

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.509672Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.706130Z digest=sha256:9d45088c5bc071225e470f27d966e39b793924f0e2f18ebcbbc2d0dce04baea0

Observation 0adcaca1-aad4-4eda-b995-38c57e86aee0 · outbound

This paper cites XLNet: Generalized Autoregressive Pretraining for Language Understanding.

Foundation Models for AI-Enabled Biological Design XLNet: Generalized Autoregressive Pretraining for Language Understanding

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.711725Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.711725Z digest=sha256:4d74c380e5deace3181e04e6caf37566b55390a13699b4c145a4dd3ca5788366

Observation 9d64f5d2-9f47-4493-9e34-1dd6f3a90807 · outbound

This paper cites Generative molecular design in low data regimes.Nature Machine Intelligence, 2(3):171–180, 2020.

Foundation Models for AI-Enabled Biological Design Generative molecular design in low data regimes.Nature Machine Intelligence, 2(3):171–180, 2020

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.490522Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.717224Z digest=sha256:5549b64dccd45928ebce6cc61662ee895f1328e79934a54d1a679568467102c8

Observation 87a479d1-c4e4-4459-b5b4-edca43a29efa · outbound

This paper cites Hyena hierar- chy: Towards larger convolutional language models.

Foundation Models for AI-Enabled Biological Design Hyena hierar- chy: Towards larger convolutional language models

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.472208Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.722629Z digest=sha256:a08b4622aa0796edfbe3320bd04f116c064c1e339953bc727d2338d2106eb5ee

Observation bfa811ec-7306-4481-b435-48d4e5225fe3 · outbound

This paper cites Protein-Mamba: Biological Mamba Models for Protein Function Prediction.

Foundation Models for AI-Enabled Biological Design Protein-Mamba: Biological Mamba Models for Protein Function Prediction

Reference 44

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.728465Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.728465Z digest=sha256:3fdde832512160822c34b6843c3cf4374059492fb656747f5fdb882e186c5d8c

Observation 89a9e906-6cbb-4fce-999a-9e97965b3708 · outbound

This paper cites Ptm-mamba: A ptm-aware protein lan- guage model with bidirectional gated mamba blocks.

Foundation Models for AI-Enabled Biological Design Ptm-mamba: A ptm-aware protein lan- guage model with bidirectional gated mamba blocks

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.453415Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.734462Z digest=sha256:70ffec30100bacb9a203037c60a16d86063cd63dc9183db8e23cd472d190eaab

Observation 0d84855e-da66-4d26-b2f1-cacd7fdc7fed · outbound

This paper cites Efficient Training of Language Models to Fill in the Middle.

Foundation Models for AI-Enabled Biological Design Efficient Training of Language Models to Fill in the Middle

Reference 46

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.740388Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.740388Z digest=sha256:d38f99785d4e50e021045c5b44e039f07c33de6112f62a68633c3dbb045404c4

Observation 2a1215de-d33a-4002-8763-81b83db986f6 · outbound

This paper cites Genomic Language Models: Opportunities and Challenges.

Foundation Models for AI-Enabled Biological Design Genomic Language Models: Opportunities and Challenges

Reference 47

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.746030Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.746030Z digest=sha256:7961f6fee64bd8001c355f9bff0f5a5dc9f2e94a2e953d3d797160c36ec0dda8

Observation 6d314bff-4704-4dbb-87df-a57fa85f16f9 · outbound

This paper cites Hungry hungry hippos: Towards language modeling with state space models.

Foundation Models for AI-Enabled Biological Design Hungry hungry hippos: Towards language modeling with state space models

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.433821Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.751682Z digest=sha256:2713253acd71caa4c2b0dc6eaf981dab091fdd56fa8d47021e873e63ee893a01

Observation 61788a3b-22ef-44e9-a7c3-1c89d1b43747 · outbound

This paper cites Zero-shot text-to-image generation.

Foundation Models for AI-Enabled Biological Design Zero-shot text-to-image generation

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.756705Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.756705Z digest=sha256:cd5e73c8a2f4b9adb1d16ebba9f537ed3c82411ca054848d1b0f39504b73fe6f

Observation 8694b3ae-dcb4-42e7-94c4-261ec2591325 · outbound

This paper cites Simple statistical gradient- following algorithms for connectionist reinforcement learning.Machine learning, 8:229–256, 1992.

Foundation Models for AI-Enabled Biological Design Simple statistical gradient- following algorithms for connectionist reinforcement learning.Machine learning, 8:229–256, 1992

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.389043Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.762240Z digest=sha256:36f696e0990da79d2849f4d7c5d4ce8b8f7b16b1b9b6f360531940e876fd5017

Observation 68a71a29-ac64-48f3-abb5-657f46fdafd1 · outbound

This paper cites Evaluating protein transfer learning with tape.Advances in neural information processing sys- tems, 32, 2019.

Foundation Models for AI-Enabled Biological Design Evaluating protein transfer learning with tape.Advances in neural information processing sys- tems, 32, 2019

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.368455Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.767370Z digest=sha256:d820503ba2c0e9a9183add5b7c0ec8b40d4d4832938cfca1b8e2d1ea55fd2d4e

Observation cc69523e-65a8-40ed-a183-8e0b236cb3ba · outbound

This paper cites Exploring the limits of transfer learning with a unified text-to-text transformer.Jour- nal of machine learning research, 21(140):1–67, 2020.

Foundation Models for AI-Enabled Biological Design Exploring the limits of transfer learning with a unified text-to-text transformer.Jour- nal of machine learning research, 21(140):1–67, 2020

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.348613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.772698Z digest=sha256:b63c683c6d0eaa6706cee52e7446aa21fa292de5591a685f53fd5294180f8dcf

Observation c6129bba-11e5-4417-bb43-f193ea78b1a0 · outbound

This paper cites Language Models are Few-Shot Learners.

Foundation Models for AI-Enabled Biological Design Language Models are Few-Shot Learners

Reference 53

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.778239Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.778239Z digest=sha256:01f7edc418c1aa6d27750794cf481716948c5f582ceb1188c30e779ac964d03c

Observation 0da9b407-5ea8-4c95-98c2-9ba46d9ff34a · outbound

This paper cites A theory of biological relativity: no priv- ileged level of causation.Interface focus, 2(1):55–64, 2012.

Foundation Models for AI-Enabled Biological Design A theory of biological relativity: no priv- ileged level of causation.Interface focus, 2(1):55–64, 2012

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.327981Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.783514Z digest=sha256:03a9b22095dfa248553c1313a10ea0c526f93df4ec4aefac485bd012bfe162d5

Observation 987a7621-9a3d-4e9f-b78d-a89d72764c89 · outbound

This paper cites It’s time to admit that genes are not the blueprint for life.Nature, 626(7998):254–255, 2024.

Foundation Models for AI-Enabled Biological Design It’s time to admit that genes are not the blueprint for life.Nature, 626(7998):254–255, 2024

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.308773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.788654Z digest=sha256:3ef135d42b6779f34ea1301742c8328fd7b127bc5253df585fe250abd2ab95aa

Observation 0850d0a4-1b47-4ba6-9d0d-a13226ebf932 · outbound

This paper cites Springer Nature, 2023.

Foundation Models for AI-Enabled Biological Design Springer Nature, 2023

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.290328Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.794206Z digest=sha256:461debb74054bd917fd3493b5e16aa430a809a41dadc8e650e1cde80726aa61d

Observation 82c682e8-2fc9-478f-a2c4-075618cda2dd · outbound

This paper cites The omg dataset: An open metagenomic corpus for mixed- modality genomic language modeling.bioRxiv, pages 2024–08, 2024.

Foundation Models for AI-Enabled Biological Design The omg dataset: An open metagenomic corpus for mixed- modality genomic language modeling.bioRxiv, pages 2024–08, 2024

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.270095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.799221Z digest=sha256:2f2e50858c422456331c6727aa7ef426ca11db5e3aeb5b6f707c1334dbe204d5

Observation 7b97911b-7918-4bc6-90c8-1348d2bfda9e · outbound

This paper cites Effi- cient and accurate prediction of protein structure using rosettafold2.BioRxiv, pages 2023–05, 2023.

Foundation Models for AI-Enabled Biological Design Effi- cient and accurate prediction of protein structure using rosettafold2.BioRxiv, pages 2023–05, 2023

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.246516Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.804826Z digest=sha256:879ebc01124c888346eb702edbef04e9380a7489ffa2a6eb7604a874d2dacfd8

Observation c988fa9e-74ed-4022-8d4d-50fd9ffc0197 · outbound

This paper cites Gene ontology: tool for the unification of biology.Nature genetics, 25(1):25–29, 2000.

Foundation Models for AI-Enabled Biological Design Gene ontology: tool for the unification of biology.Nature genetics, 25(1):25–29, 2000

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.220860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.813002Z digest=sha256:052edd3fcedbe3b0ae7cf934b20d11f4faf7d7cc9f9dfbd17f14fd46c47fed92

Observation d3a73b40-bd85-4f7d-bfd6-2bc85277341b · outbound

This paper cites The nucleotide transformer: Building and evaluating robust foundation models for human ge- nomics.BioRxiv, pages 2023–01, 2023.

Foundation Models for AI-Enabled Biological Design The nucleotide transformer: Building and evaluating robust foundation models for human ge- nomics.BioRxiv, pages 2023–01, 2023

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.200121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.818658Z digest=sha256:d2bcede6926d5ae9f136c5d1a4b1f6c5b501d7ad1a8fd39a4ca44fff0aac8db8

Observation 9a3669da-472d-4068-80d2-0b67b5df1025 · outbound

This paper cites Scaling Laws for Neural Language Models.

Foundation Models for AI-Enabled Biological Design Scaling Laws for Neural Language Models

Reference 61

Resolution
unresolved
no resolver link, observed 2026-08-15T20:54:23.825858Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-15T20:54:23.825858Z digest=sha256:28189c331e5e26c72af2022c0fb54f3a7cf63043ad0037056acbad8de9f3c339

Observation e1a9567e-df38-44dc-b722-b4dd51c5332a · outbound

This paper cites Explaining neural scaling laws.Proceedings of the National Academy of Sci- ences, 121(27):e2311878121, 2024.

Foundation Models for AI-Enabled Biological Design Explaining neural scaling laws.Proceedings of the National Academy of Sci- ences, 121(27):e2311878121, 2024

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.178707Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.833562Z digest=sha256:2f93362959ec6a7c812e9e6ef38539a34708d1b073de0e64426715d529e426f5

Observation cf9a54e0-d279-4c4e-8ef7-820b916afd28 · outbound

This paper cites Biolog- ical structure and function emerge from scaling un- supervised learning to 250 million protein sequences.

Foundation Models for AI-Enabled Biological Design Biolog- ical structure and function emerge from scaling un- supervised learning to 250 million protein sequences

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.160202Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.840789Z digest=sha256:95833d31ddfbdbb1759f46a5c34961829b7ab1e2bd190ebf59f5763203196994

Observation e1e8cc74-c81d-4864-9c36-3b324239c340 · outbound

This paper cites Neural scaling of deep chemical models.Nature Machine Intelligence, 5(11):1297–1305, 2023.

Foundation Models for AI-Enabled Biological Design Neural scaling of deep chemical models.Nature Machine Intelligence, 5(11):1297–1305, 2023

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.142128Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.846871Z digest=sha256:7cd07a8af0ed9e21c235effd4f1b150665cca471ef2706359ae8067073cca66e

Observation c6849290-8a9c-4671-96d0-ad3e88a3070f · outbound

This paper cites Molca: Molecular graph-language modeling with cross-modal projector and uni-modal adapter.

Foundation Models for AI-Enabled Biological Design Molca: Molecular graph-language modeling with cross-modal projector and uni-modal adapter

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.123465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.853815Z digest=sha256:963b00cf5c5dec12e49d38b2bde863278c513525889149d11490f9bcb5ebc14e

Observation 7d6e7e79-6e06-49ef-a01f-292c298f4e31 · outbound

This paper cites Foundation models for scientific discovery and innovation: Opportunities across the department of energy, 2024.

Foundation Models for AI-Enabled Biological Design Foundation models for scientific discovery and innovation: Opportunities across the department of energy, 2024

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-15T20:54:24.104157Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

source=pdf_text observed=2026-08-15T20:54:23.859103Z digest=sha256:a3d5c5c72b7d8730b63dedee39f61ae02650266489fef23671c561c9f93cbe48

Pith citing papers

No inbound Pith citation observations are available.