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Paper Citation Record · LEDGER

Applications of Modular Co-Design for De Novo 3D Molecule Generation

As of 17 August 2026, this Paper Citation Record lists 52 of 52 outbound references and 2 inbound Pith citation observations for arXiv:2505.18392.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.18392 v1

Coverage vector

measured 52 of 52 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T14:36:02.409514Z

measured 54 of 54 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T11:28:55.625612Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

52 of 52 outbound references displayed

  • verified exact1
  • verified fuzzy13
  • unresolved38
  • parse uncertain0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8daa9aa7-be64-45cc-b3a1-f116f1bfabdd · outbound

This paper cites write newline.

Applications of Modular Co-Design for De Novo 3D Molecule Generation write newline

Reference 1

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Unavailable: canonical work link unavailable.

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Observation aba6f87a-8647-4d64-9f95-d549a3d3d6c6 · outbound

This paper cites write newline.

Applications of Modular Co-Design for De Novo 3D Molecule Generation write newline

Reference 2

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:35:59.781462Z digest=sha256:fc438340864c6d99ee68577118cae22eed14da4a0abdc46ac3d9120540dfca6f

Observation 5973ffd4-7124-42db-997c-feacf0282297 · outbound

This paper cites Ballard, Joshua Bambrick, Sebastian W.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Ballard, Joshua Bambrick, Sebastian W

Reference 3

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no resolver link, observed 2026-08-07T14:35:59.822434Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:35:59.822434Z digest=sha256:8971871ebb51756e4ed46f3b771f771856ea8299983106f6e91d627b442e7b26

Observation cc46b6d2-884f-4c72-9d5c-2d373f90dfe3 · outbound

This paper cites Stochastic Interpolants: A Unifying Framework for Flows and Diffusions.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Stochastic Interpolants: A Unifying Framework for Flows and Diffusions

Reference 4

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Observation 236220f0-597c-4c45-b023-6cdcc4729c29 · outbound

This paper cites Structured denoising diffusion models in discrete state-spaces.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Structured denoising diffusion models in discrete state-spaces

Reference 5

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no resolver link, observed 2026-08-07T14:35:59.918462Z

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Observation 11d53e68-0638-437c-b5bc-240affce78b8 · outbound

This paper cites Geom, energy-annotated molecular conformations for property prediction and molecular generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Geom, energy-annotated molecular conformations for property prediction and molecular generation

Reference 6

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unresolved
no resolver link, observed 2026-08-07T14:35:59.955782Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation a6733471-b771-41f9-887d-4df5dc852c24 · outbound

This paper cites Gfn2-xtb---an accurate and broadly parametrized self-consistent tight-binding quantum chemical method with multipole electrostatics and density-dependent dispersion contributions.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Gfn2-xtb---an accurate and broadly parametrized self-consistent tight-binding quantum chemical method with multipole electrostatics and density-dependent dispersion contributions

Reference 7

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:35:59.989798Z digest=sha256:f0830ebea5c82457c170eb9801e278e7a460fb6e9ca43d3e20187a4603834232

Observation 8ea5a49b-f85d-4b88-921b-0a69e6b4fcb3 · outbound

This paper cites Langley, and Craig M.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Langley, and Craig M

Reference 8

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verified exact
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

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Observation 52421e0f-7d96-4222-93a0-ac276a5973ea · outbound

This paper cites an unresolved cited work.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Unresolved cited work

Reference 9

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 28880ff2-c42e-4644-a032-1e3f7b2a2099 · outbound

This paper cites Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

Reference 10

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 08f27d32-77cd-48c5-a5f4-41694f585fd7 · outbound

This paper cites Analog Bits: Generating Discrete Data using Diffusion Models with Self-Conditioning.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Analog Bits: Generating Discrete Data using Diffusion Models with Self-Conditioning

Reference 11

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.148687Z digest=sha256:0dfefe537950512e2b4952a370f481fe25fc704ca4f5d223abb9fff7304a6d32

Observation 9ed45892-6f4d-4d08-a211-d1915ecb00e9 · outbound

This paper cites Diffdock: Diffusion steps, twists, and turns for molecular docking.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Diffdock: Diffusion steps, twists, and turns for molecular docking

Reference 12

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:00.182732Z digest=sha256:7b93e8ff374957691ac1aa078ec287cd4ac96fd32569ee248330cedd3fda48e5

Observation b6d14fcc-396c-4d63-9b95-48e1e70efd10 · outbound

This paper cites Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models

Reference 13

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 766f4c6a-133d-49e9-8f90-36dafefb91a0 · outbound

This paper cites Plinder: The protein-ligand interactions dataset and evaluation resource.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Plinder: The protein-ligand interactions dataset and evaluation resource

Reference 14

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation e0176c46-a908-4886-b57b-b21a711fadf3 · outbound

This paper cites Scaling rectified flow transformers for high-resolution image synthesis.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Scaling rectified flow transformers for high-resolution image synthesis

Reference 15

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:00.318971Z digest=sha256:cf047cc727cedcdf7fdc4432dcce62751d3750f0e0892268f4dec9fda5346144

Observation fa41215a-8b33-4c56-adf8-68351c46cbcb · outbound

This paper cites Energy windows for computed compound conformers: covering artefacts or truly large reorganization energies? Future Medicinal Chemistry, 11 0 (2): 0 97--118, 2019.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Energy windows for computed compound conformers: covering artefacts or truly large reorganization energies? Future Medicinal Chemistry, 11 0 (2): 0 97--118, 2019

Reference 16

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

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Observation 03fa4e9e-b7e4-44b8-9c39-c0cda95175f0 · outbound

This paper cites Wei, David Duvenaud, José Miguel Hernández-Lobato, Benjamín Sánchez-Lengeling, Dennis Sheberla, Jorge Aguilera-Iparraguirre, Timothy D.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Wei, David Duvenaud, José Miguel Hernández-Lobato, Benjamín Sánchez-Lengeling, Dennis Sheberla, Jorge Aguilera-Iparraguirre, Timothy D

Reference 17

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 18f7d1cb-24e7-4e56-ba21-eb23b16a1939 · outbound

This paper cites an unresolved cited work.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Unresolved cited work

Reference 18

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no resolver link, observed 2026-08-07T14:36:00.416053Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.416053Z digest=sha256:387bcedb3acf2220de2a19ab9cd9c450ca686c863ba432d0e31f2dd2bf5f0c3e

Observation 4b808cd4-4497-4516-b843-04d54a8537bd · outbound

This paper cites Sofroniew, Deniz Oktay, Zeming Lin, Robert Verkuil, Vincent Q.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Sofroniew, Deniz Oktay, Zeming Lin, Robert Verkuil, Vincent Q

Reference 19

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:00.494235Z digest=sha256:d0f481c0e75030f499268bab6be05ce4f88bbc451b3bc2cf6ab7b454a9be1c26

Observation 1b7c5b1f-538e-40bc-8519-89b37c260b88 · outbound

This paper cites Query-key normalization for transformers.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Query-key normalization for transformers

Reference 20

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.577873Z digest=sha256:30b5f6fff2418863d7a98e714df9a8a14cc7bf5e5f7a770a4991e8ccbf773edd

Observation 2bc5e1ba-a3cb-45ad-bf5e-a68ec48b294c · outbound

This paper cites Denoising Diffusion Probabilistic Models.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Denoising Diffusion Probabilistic Models

Reference 21

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.683179Z digest=sha256:078749dd7c80d64e9653597ef6bad5fe01eb38cf727ffeffb8a37be437c70543

Observation 5f41d0df-5c78-409e-bb1b-b24d31588804 · outbound

This paper cites Equivariant diffusion for molecule generation in 3d.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Equivariant diffusion for molecule generation in 3d

Reference 22

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:00.753770Z digest=sha256:ca106cd735da158c3fca70c00870ecc228f0f27d8382d78810548bc8f1bc449b

Observation a29cdd24-41da-4d80-bbac-f00a3cfb5b6f · outbound

This paper cites Efficient 3d molecular generation with flow matching and scale optimal transport, 2024.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Efficient 3d molecular generation with flow matching and scale optimal transport, 2024

Reference 23

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

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Observation 4468d784-a266-4699-ab19-57b5fd8e4474 · outbound

This paper cites Torsional Diffusion for Molecular Conformer Generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Torsional Diffusion for Molecular Conformer Generation

Reference 24

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:00.894973Z digest=sha256:ccbdd643ec0160aa22d2b09673fe0e7cddfc688b006c9a48c1d29d362ebb8149

Observation cca10388-32b5-442e-b112-a5b518a54934 · outbound

This paper cites Navigating the design space of equivariant diffusion-based generative models for de novo 3d molecule generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Navigating the design space of equivariant diffusion-based generative models for de novo 3d molecule generation

Reference 25

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.946282Z digest=sha256:7d2012bcfc7b4661c487b008b0ab01bb5eb5b4aa54dc08a572012b8a03a01b88

Observation 28add5b6-3430-4c65-8330-205398f642b0 · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 26

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unresolved
no resolver link, observed 2026-08-07T14:36:00.972761Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.972761Z digest=sha256:8863e335cb914b1707125d46b2751e9f44199dd8e37c61770d5e3771b3e5a565

Observation 683bf224-e150-49b7-989b-3e26525a103f · outbound

This paper cites an unresolved cited work.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Unresolved cited work

Reference 27

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unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:00.991659Z digest=sha256:1f29a80df0ffbf1d43921234d7e46fefeab802c4bbca1d2a6bfce93dae77707a

Observation 1bd4b991-25a1-4dde-b530-37e98a6c2a04 · outbound

This paper cites SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers.

Applications of Modular Co-Design for De Novo 3D Molecule Generation SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers

Reference 28

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unresolved
no resolver link, observed 2026-08-07T14:36:01.058699Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:01.058699Z digest=sha256:45c27ec924bf19df3ffba642fe44a72eba2f8c7050261938a9c8a4b6b1ce3f4d

Observation 33840525-c847-4dc3-a6b8-5645b47c19cb · outbound

This paper cites O'Boyle, Michael Banck, Craig A.

Applications of Modular Co-Design for De Novo 3D Molecule Generation O'Boyle, Michael Banck, Craig A

Reference 29

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unresolved
no resolver link, observed 2026-08-07T14:36:01.129860Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 498e9522-5499-4a92-be11-ad0a8ea3f2f7 · outbound

This paper cites Scalable Diffusion Models with Transformers.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Scalable Diffusion Models with Transformers

Reference 30

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unresolved
no resolver link, observed 2026-08-07T14:36:01.172923Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:01.172923Z digest=sha256:8a68547051a35e9a7ac9a29b6191d517608322454bb0063381931d8ead8fe028

Observation 488afcc7-f2de-42e1-87c6-ca5bcb75fd5b · outbound

This paper cites M ol D iff: Addressing the atom-bond inconsistency problem in 3 D molecule diffusion generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation M ol D iff: Addressing the atom-bond inconsistency problem in 3 D molecule diffusion generation

Reference 31

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.215768Z digest=sha256:42221d6009618b4b8e55fdca9b9cfeffdc8df9dd499d4ee80e70cf30d9568534

Observation 359a5e5c-e8a3-4739-b0e8-26b84e35a765 · outbound

This paper cites 3D molecule generation by denoising voxel grids.

Applications of Modular Co-Design for De Novo 3D Molecule Generation 3D molecule generation by denoising voxel grids

Reference 32

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unresolved
no resolver link, observed 2026-08-07T14:36:01.248999Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:01.248999Z digest=sha256:780e718132e9cb21ea45b7f971fb5cf8c27075a9d1b97197f0fd83af12d30337

Observation 34be5449-7378-4461-8c34-5ed82f661f7d · outbound

This paper cites Crest—a program for the exploration of low-energy molecular chemical space.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Crest—a program for the exploration of low-energy molecular chemical space

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T14:36:03.756918Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.273965Z digest=sha256:1fc4fa4573c3f542ff3e7164806f76e99777c86028993a7b9be6f41845636f17

Observation 8b55de44-f383-4ab5-b95d-d2d907c0eaab · outbound

This paper cites Evo SBDD : Latent evolution for accurate and efficient structure-based drug design.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Evo SBDD : Latent evolution for accurate and efficient structure-based drug design

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T14:36:03.566071Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.306997Z digest=sha256:75a0ea243e1e9ce5ba4e251a5a69d21a3b89615ef9b6164309be926baabf458b

Observation bf0557a5-25f3-4b98-a69d-6021420e4c39 · outbound

This paper cites E (n) equivariant graph neural networks.

Applications of Modular Co-Design for De Novo 3D Molecule Generation E (n) equivariant graph neural networks

Reference 35

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verified fuzzy
raw_fallback, observed 2026-08-07T14:36:03.437542Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.384777Z digest=sha256:060e7207e67bccd2f406d9c29a382f47438f3cb011000ef7f44d24894d8c46c3

Observation bfba4c89-014d-45be-89e6-911e9a69bcff · outbound

This paper cites Structure-based Drug Design with Equivariant Diffusion Models.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Structure-based Drug Design with Equivariant Diffusion Models

Reference 36

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unresolved
no resolver link, observed 2026-08-07T14:36:01.476036Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-07T14:36:01.476036Z digest=sha256:0cbbbc81d61e0076d52ff92ca523772b35445423e7069624f71896b648ef4dba

Observation 2a3fcafe-f041-4258-a32c-d3f786b93a2e · outbound

This paper cites Score-Based Generative Modeling through Stochastic Differential Equations.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Score-Based Generative Modeling through Stochastic Differential Equations

Reference 37

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.543718Z digest=sha256:caaffbb23abdac7b97fea3f6910ea330e6fd54bdec08c234d1ffc4732d345bd6

Observation b85aa6ec-472e-4756-96fc-b2ab8ecbb350 · outbound

This paper cites Equivariant flow matching with hybrid probability transport for 3d molecule generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Equivariant flow matching with hybrid probability transport for 3d molecule generation

Reference 38

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.582399Z digest=sha256:db1d6c2d72054855c58f2d706e3ea8f4dfa277357e69d15dd3573ed598328b1d

Observation 91dec0e6-9c81-4420-9387-d70135b77784 · outbound

This paper cites Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks

Reference 39

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no resolver link, observed 2026-08-07T14:36:01.628714Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.628714Z digest=sha256:d3004a18352216c700e2a744d262e3376a6f04a363c47d46d8bf716137f6af0b

Observation f2849520-6d0a-4652-a682-aefedbd234ee · outbound

This paper cites Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design

Reference 40

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.715195Z digest=sha256:1684c5fb03d2c0ab67f132fed0ae62847acc59b092ac60f4dd73111ceb2004ec

Observation 94658451-2326-4be4-adee-16ed99a09027 · outbound

This paper cites Improving and generalizing flow-based generative models with minibatch optimal transport.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Improving and generalizing flow-based generative models with minibatch optimal transport

Reference 41

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no resolver link, observed 2026-08-07T14:36:01.767358Z

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source=arxiv_source observed=2026-08-07T14:36:01.767358Z digest=sha256:5c5dbc034d726ac21943c473596ad0dffbcc943024a646b8b798f71544184156

Observation a323867f-c3c0-4028-8ec6-7a32e008811c · outbound

This paper cites Attention is all you need.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Attention is all you need

Reference 42

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no resolver link, observed 2026-08-07T14:36:01.836951Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.836951Z digest=sha256:aab4585ea807bc898c721f8c676efd021e3dc04298f88d43629cb1f6c11218fe

Observation 1069964f-1070-4e5d-a245-7bdbbc614592 · outbound

This paper cites MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation

Reference 43

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no resolver link, observed 2026-08-07T14:36:01.887363Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.887363Z digest=sha256:71ca51dbda243e1aedd05ac2193719c9e04790110a25f37858e0676d38c0c519

Observation 503084cc-e253-43c9-8341-e5b2f66b1ac2 · outbound

This paper cites A connection between score matching and denoising autoencoders.

Applications of Modular Co-Design for De Novo 3D Molecule Generation A connection between score matching and denoising autoencoders

Reference 44

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unresolved
no resolver link, observed 2026-08-07T14:36:01.972581Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:01.972581Z digest=sha256:190ba2e5006c9016522cbdd2a5d11a2932f004077e00772575744dc8691ebd13

Observation a8cd1143-7cd5-4a73-b826-15e46cfbc156 · outbound

This paper cites Generative molecular design isn't as easy as people make it look, May 2024.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Generative molecular design isn't as easy as people make it look, May 2024

Reference 45

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verified fuzzy
raw_fallback, observed 2026-08-07T14:36:03.088646Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:01.996110Z digest=sha256:9843d8ad8b3c8cdcb1fbd912f3355e4bc05611a6590373a998901bdb9d583ee6

Observation 0aca5d57-90bf-40a3-b7d3-f0241c3929e9 · outbound

This paper cites Elhag, Navdeep Jaitly, Joshua M.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Elhag, Navdeep Jaitly, Joshua M

Reference 46

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verified fuzzy
raw_fallback, observed 2026-08-07T14:36:02.946323Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-07T14:36:02.003592Z digest=sha256:696e6889649f3867a343c8efc1d1ab03a4fdc5bda801e86a578ecd906019056b

Observation 1b9b3403-62ea-4d53-b4c7-023eed5ece41 · outbound

This paper cites Geodiff: A geometric diffusion model for molecular conformation generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Geodiff: A geometric diffusion model for molecular conformation generation

Reference 47

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no resolver link, observed 2026-08-07T14:36:02.065967Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.065967Z digest=sha256:683b5f3eb3612e4c21c87d6c861e0c3be66df274697f766463106bed2295f11e

Observation cf11bed3-feac-452d-a98b-1fc445ea26d6 · outbound

This paper cites Geometric Latent Diffusion Models for 3D Molecule Generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Geometric Latent Diffusion Models for 3D Molecule Generation

Reference 48

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unresolved
no resolver link, observed 2026-08-07T14:36:02.177091Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.177091Z digest=sha256:80bee831a42544bc5ebf03edddfcddbaf5621511b95e5888e8fa6014d2f024de

Observation d7f5b1d0-fb57-4163-a2b0-8ae410f9fbda · outbound

This paper cites SE(3) diffusion model with application to protein backbone generation.

Applications of Modular Co-Design for De Novo 3D Molecule Generation SE(3) diffusion model with application to protein backbone generation

Reference 49

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no resolver link, observed 2026-08-07T14:36:02.253914Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.253914Z digest=sha256:9c50c8eba2db7d8085bba5a7a4463b06e9298b79727842a378a315189e8dd3fa

Observation 92b91b43-7fa7-4217-8451-ff39c6ee2d90 · outbound

This paper cites @esa (Ref.

Applications of Modular Co-Design for De Novo 3D Molecule Generation @esa (Ref

Reference 50

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unresolved
no resolver link, observed 2026-08-07T14:36:02.307514Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.307514Z digest=sha256:e6d63c2ab829fe0b811f39c419d4ee4fab689d91baf90302f281611aef17f3c4

Observation 84cd8344-ffbd-4ed7-8e46-1aead2f02f5c · outbound

This paper cites an unresolved cited work.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Unresolved cited work

Reference 51

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no resolver link, observed 2026-08-07T14:36:02.348754Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.348754Z digest=sha256:3c4c1944fdd31a325a413d1d468bb14a2e9bd0a5ca40d5aef740d70cf2edc592

Observation e44b7a5b-5aef-424a-8c23-9636be6ad8a4 · outbound

This paper cites Benchmarking Generated Poses: How Rational is Structure-based Drug Design with Generative Models?.

Applications of Modular Co-Design for De Novo 3D Molecule Generation Benchmarking Generated Poses: How Rational is Structure-based Drug Design with Generative Models?

Reference 52

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no resolver link, observed 2026-08-07T14:36:02.409514Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-07T14:36:02.409514Z digest=sha256:594b9c03b3c81a9323fd7693f2a29609d98ee9cd75cfdff1e8e829c3ab700531

Pith citing papers

Observation 0394dac6-6f43-4a55-9c85-97c98131efaa · inbound

Predictive Feature Caching for Training-free Acceleration of Molecular Geometry Generation cites this paper.

Predictive Feature Caching for Training-free Acceleration of Molecular Geometry Generation Applications of Modular Co-Design for De Novo 3D Molecule Generation

Reference 33

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unresolved
no resolver link, observed 2026-08-04T11:28:55.625612Z

Source-reported events for the cited work

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source=arxiv_source observed=2026-08-04T11:28:55.625612Z digest=sha256:155aaae97eab1ed81ab2eb3eb62619dbe5ab46a3066e5d64e25ac432000edf73

Observation 68a9b558-5e05-495d-9732-5380cd143994 · inbound

VEDA: 3D Molecular Generation via Variance-Exploding Diffusion with Annealing cites this paper.

VEDA: 3D Molecular Generation via Variance-Exploding Diffusion with Annealing Applications of Modular Co-Design for De Novo 3D Molecule Generation

Reference 4

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no resolver link, observed 2026-08-03T23:02:58.102933Z

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source=pdf_text observed=2026-08-03T23:02:58.102933Z digest=sha256:5a32e6ff7a370a7bf6b3853db3128da722dcda4a4f239a22651ab8c03744d573