Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-07T13:25:01.885819Z
Paper Citation Record · LEDGER
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3
As of 11 August 2026, this Paper Citation Record lists 28 of 28 outbound references and 0 inbound Pith citation observations for arXiv:2505.21873.
A citation records a reference. It does not transfer a finding from one paper to another.
Coverage vector
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-11T06:34:44.6726+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
Reference resolution
28 of 28 outbound references displayed
- verified exact0
- verified fuzzy19
- unresolved9
- parse uncertain0
- malformed identifier0
- metadata mismatch0
External citation measurements
No source-named external measurement is stored.
Outbound references
Observation c0c0ed42-b8ee-4ee0-a781-f980ecbb4066 · outbound
This paper cites Protein complex prediction with alphafold-multimer.biorxiv, pages 2021–10, 2021.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Protein complex prediction with alphafold-multimer.biorxiv, pages 2021–10, 2021
Reference 1
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:05.529349Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 95f0fc0f-e457-441d-b155-2217fdfd7c42 · outbound
This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.Nature, 630(8016):493–500, 2024.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Accurate structure prediction of biomolecular interactions with alphafold 3.Nature, 630(8016):493–500, 2024
Reference 2
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.246432Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 99666bd3-e263-4647-9622-e314321570ae · outbound
This paper cites Technical Report of HelixFold3 for Biomolecular Structure Prediction.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Technical Report of HelixFold3 for Biomolecular Structure Prediction
Reference 3
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.309561Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 46378dc0-b613-46db-947a-b9356f6b7cbc · outbound
This paper cites De novo design of high-affinity protein binders with AlphaProteo.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 De novo design of high-affinity protein binders with AlphaProteo
Reference 4
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.418009Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation af263063-16c9-4cae-a6e2-e2ffd1b30a43 · outbound
This paper cites Bindcraft: one-shot design of functional protein binders.bioRxiv, pages 2024–09, 2024.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Bindcraft: one-shot design of functional protein binders.bioRxiv, pages 2024–09, 2024
Reference 5
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:05.383304Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 2b2dbcc1-f6c8-432c-9652-19eafdc10a9b · outbound
This paper cites De novo design of protein structure and function with rfdiffusion.Nature, 620(7976):1089–1100, 2023.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 De novo design of protein structure and function with rfdiffusion.Nature, 620(7976):1089–1100, 2023
Reference 6
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.565734Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation a7728198-2b5e-41c2-bb0a-82787529b114 · outbound
This paper cites Atom level enzyme active site scaffolding using rfdiffusion2.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Atom level enzyme active site scaffolding using rfdiffusion2
Reference 7
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:05.211922Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation a65990d6-ce77-41b0-aaad-498b5e8da35d · outbound
This paper cites Learning inverse folding from millions of predicted structures.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Learning inverse folding from millions of predicted structures
Reference 8
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.786140Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation e377236f-339f-46be-87ad-56cdd4949cdb · outbound
This paper cites Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022
Reference 9
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:24:59.900557Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 7959c2b5-b888-47cf-a1d0-a7da8b8380b9 · outbound
This paper cites The foldx web server: an online force field.Nucleic acids research, 33(suppl_2):W382–W388, 2005.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 The foldx web server: an online force field.Nucleic acids research, 33(suppl_2):W382–W388, 2005
Reference 10
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:05.066756Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 043018b5-6dc2-495c-9ad3-953caea0aed6 · outbound
This paper cites Prodigy: a web server for predicting the binding affinity of protein–protein complexes.Bioinformatics, 32(23):3676–3678, 2016.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Prodigy: a web server for predicting the binding affinity of protein–protein complexes.Bioinformatics, 32(23):3676–3678, 2016
Reference 11
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.933822Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 8758d2f1-0cf4-430d-a8f0-8407e419a225 · outbound
This paper cites Improving de novo protein binder design with deep learning.Nature Communications, 14(1):2625, 2023.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Improving de novo protein binder design with deep learning.Nature Communications, 14(1):2625, 2023
Reference 12
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.782673Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation d93beee5-5c50-4a29-98fd-629b67b1d5d0 · outbound
This paper cites Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025
Reference 13
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:25:00.292247Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 93dd5d3c-55ff-4fa8-a044-4abfce7b0748 · outbound
This paper cites Design of protein-binding proteins from the target structure alone.Nature, 605(7910):551–560, 2022.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Design of protein-binding proteins from the target structure alone.Nature, 605(7910):551–560, 2022
Reference 14
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.625660Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation a482e6dc-606f-4d39-9acf-dd6c338b12cf · outbound
This paper cites Protein data bank (pdb): the single global macromolecular structure archive.Protein crystallography: methods and protocols, pages 627–641, 2017.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Protein data bank (pdb): the single global macromolecular structure archive.Protein crystallography: methods and protocols, pages 627–641, 2017
Reference 15
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:25:00.483904Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d82560fe-5bc6-43f5-8b51-73e61527de7a · outbound
This paper cites Evaluation of alphafold 3’s protein–protein complexes for predicting binding free energy changes upon mutation.Journal of Chemical Information and Modeling, 64(16):6676–6683, 2024.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Evaluation of alphafold 3’s protein–protein complexes for predicting binding free energy changes upon mutation.Journal of Chemical Information and Modeling, 64(16):6676–6683, 2024
Reference 16
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.480896Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 75d4b4f5-886c-4339-97ba-5af1d15cb182 · outbound
This paper cites Implementing and assessing an alchemical method for calculating protein–protein binding free energy.Journal of chemical theory and computation, 17(4):2457–2464, 2021.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Implementing and assessing an alchemical method for calculating protein–protein binding free energy.Journal of chemical theory and computation, 17(4):2457–2464, 2021
Reference 17
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.306135Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 91039a53-5bc2-4fe9-a420-35369d4e91c4 · outbound
This paper cites Assessment of software methods for estimating protein-protein relative binding affinities.PLoS One, 15(12):e0240573, 2020.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Assessment of software methods for estimating protein-protein relative binding affinities.PLoS One, 15(12):e0240573, 2020
Reference 18
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.149242Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation dafcce08-2111-44b0-bfc9-f326c2fb84f7 · outbound
This paper cites Ab-bind: antibody binding mutational database for computational affinity predictions.Protein Science, 25(2):393–409, 2016.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Ab-bind: antibody binding mutational database for computational affinity predictions.Protein Science, 25(2):393–409, 2016
Reference 19
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:04.031375Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 8fa354da-1f0b-4201-8f93-3d111cb8273d · outbound
This paper cites Structural and biophysical studies of the human il-7/il-7rα complex.Structure, 17(1):54–65, 2009.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Structural and biophysical studies of the human il-7/il-7rα complex.Structure, 17(1):54–65, 2009
Reference 20
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:03.813132Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 6027761e-15c3-43e1-b679-ccac8773986f · outbound
This paper cites Structural insight into how bacteria prevent interference between multiple divergent type iv secretion systems.MBio, 6(6):10–1128, 2015.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Structural insight into how bacteria prevent interference between multiple divergent type iv secretion systems.MBio, 6(6):10–1128, 2015
Reference 21
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:03.617586Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 2b283110-37d4-47b3-af17-5a2006ab9bdb · outbound
This paper cites Crystal structure of nerve growth factor in complex with the ligand-binding domain of the trka receptor.Nature, 401(6749):184–188, 1999.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Crystal structure of nerve growth factor in complex with the ligand-binding domain of the trka receptor.Nature, 401(6749):184–188, 1999
Reference 22
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:03.398934Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 19af8a04-effb-446d-8d06-2a511b96cdaf · outbound
This paper cites Higher-resolution structure of the human insulin receptor ectodomain: multi-modal inclusion of the insert domain.Structure, 24(3):469–476, 2016.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Higher-resolution structure of the human insulin receptor ectodomain: multi-modal inclusion of the insert domain.Structure, 24(3):469–476, 2016
Reference 23
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:03.182896Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 581da583-e45d-48d8-8f94-8118101bd9cd · outbound
This paper cites Crystal structures of two fgf-fgfr complexes reveal the determinants of ligand-receptor specificity.Cell, 101(4):413–424, 2000.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Crystal structures of two fgf-fgfr complexes reveal the determinants of ligand-receptor specificity.Cell, 101(4):413–424, 2000
Reference 24
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:02.907945Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 02d532cc-eed6-4975-aef1-bb837464db1e · outbound
This paper cites Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex
Reference 25
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:02.690388Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation f38fd8c2-7608-48e4-8728-0065aaa07db3 · outbound
This paper cites Improved prediction of protein-protein interactions using alphafold2.Nature communications, 13(1):1265, 2022.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Improved prediction of protein-protein interactions using alphafold2.Nature communications, 13(1):1265, 2022
Reference 26
- Resolution
- unresolved
- no resolver link, observed 2026-08-07T13:25:01.630279Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation a735ea7a-3f2e-47c9-b842-941510715375 · outbound
This paper cites Enhanced protein-protein interaction discovery via alphafold-multimer.bioRxiv, pages 2024–02, 2024.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Enhanced protein-protein interaction discovery via alphafold-multimer.bioRxiv, pages 2024–02, 2024
Reference 27
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:02.454214Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Observation 38fced04-eed5-41c5-b3bb-7d3bdb2e2727 · outbound
This paper cites Protein modeling and structure-based drug design.
HelixDesign-Binder: A Scalable Production-Grade Platform for Binder Design Built on HelixFold3 Protein modeling and structure-based drug design
Reference 28
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-07T13:25:02.199951Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.
Pith citing papers
No inbound Pith citation observations are available.