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Paper Citation Record · LEDGER

Improving Protein Sequence Design through Designability Preference Optimization

As of 21 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 1 inbound Pith citation observation for arXiv:2506.00297.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00297 v1

Coverage vector

measured 47 of 47 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T12:12:14.333339Z

measured 48 of 48 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-02T09:46:04.299810Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

47 of 47 outbound references displayed

  • verified exact0
  • verified fuzzy37
  • unresolved10
  • parse uncertain0
  • malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2af98852-9dd0-4ac9-9c28-b4a53e00b860 · outbound

This paper cites Boyken, and David Baker.

Improving Protein Sequence Design through Designability Preference Optimization Boyken, and David Baker

Reference 1

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 8d904d26-b77f-4c10-aa52-ceab52555064 · outbound

This paper cites Watson, David Juergens, Nathaniel R.

Improving Protein Sequence Design through Designability Preference Optimization Watson, David Juergens, Nathaniel R

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.314937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:07.553580Z digest=sha256:0d47f1c10145730977451df7e5454f107f17ab713d95c025bb9b3b80e8bf5fe6

Observation a9a4082f-7a6b-4c37-a596-e9f50e19118f · outbound

This paper cites Mackessy, Stefanie K.

Improving Protein Sequence Design through Designability Preference Optimization Mackessy, Stefanie K

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.132229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:07.781176Z digest=sha256:218c4fb035c0f38caf06eb7eac3faeac42f26ddc36830cc23f499d8f9bd83271

Observation 0d6e696c-87ab-429b-b79a-805adb881a63 · outbound

This paper cites Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.979880Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:07.931756Z digest=sha256:0867b5ced15924e03f2d6128f636d7b3aa05e623a94fb7d1d21584cd5caf4d6b

Observation f8ef5b18-ce88-4eae-8f0b-046824bf33ec · outbound

This paper cites Dauparas, I.

Improving Protein Sequence Design through Designability Preference Optimization Dauparas, I

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.829624Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.037654Z digest=sha256:de9471e4d1e7c40a40f29cf3139a2e536de4d3f6f580f27e6ad4cd9f123b09fd

Observation b278819a-fceb-4727-81ee-212a26949612 · outbound

This paper cites Generative Models for Graph-Based Protein Design.

Improving Protein Sequence Design through Designability Preference Optimization Generative Models for Graph-Based Protein Design

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.616535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.175173Z digest=sha256:5386fc1f2ccd79f58a618a5cc7a3ae79dbf8195e4fe8cfcc595a04ea4592b721

Observation a51273d9-e6a7-4ac0-98a3-58d26e415223 · outbound

This paper cites Learning from Protein Structure with Geometric Vector Perceptrons.

Improving Protein Sequence Design through Designability Preference Optimization Learning from Protein Structure with Geometric Vector Perceptrons

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.445057Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.282188Z digest=sha256:1b8a28dd70f4b15f89466591cab118c03eefa49f62a40e8c3135cf2879e55405

Observation 2d6a61ec-fc6b-4da4-a248-d8b91dc018ae · outbound

This paper cites Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.217687Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.362935Z digest=sha256:d7619f09121f834e66045ec4f6b9ece799154a27f65438fd4eb3726f969d22a5

Observation e2e86d6c-32ee-4184-b709-ee4ba3b1ada8 · outbound

This paper cites Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.070739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.463298Z digest=sha256:c5bdfc00cb1d76f194541b9c34264f2e45b0eb8ec500f865f4a9b1043cdbbcf4

Observation 64aa0f28-23b3-4699-9f13-2140b9e63aaf · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 10

Resolution
unresolved
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.574989Z digest=sha256:a50bdf4e9c4840c8b075332df2011e1c5333658649eed4f52b07b473e7f96473

Observation df37c098-33e2-4787-ad4b-7eb202472eae · outbound

This paper cites Mathews, Carla P.

Improving Protein Sequence Design through Designability Preference Optimization Mathews, Carla P

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.784350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.687842Z digest=sha256:b356c70ffb48b86a9c7e20884f9a40b859511072819dde380f05afd3aedc13d0

Observation 7794d9b9-9b41-4d28-bb48-9dcec654c7a2 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.604167Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:08.785633Z digest=sha256:4417331598df144d7415de5275fc98965736b36ac10c6c2b5f066c62d9a85f2d

Observation d796f56d-8a1c-47d8-a240-ff942a4c2489 · outbound

This paper cites ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023.

Improving Protein Sequence Design through Designability Preference Optimization ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023

Reference 13

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation d2b07b4d-ee82-4e02-a169-71601157e8b7 · outbound

This paper cites Structure- informed Language Models Are Protein Designers.

Improving Protein Sequence Design through Designability Preference Optimization Structure- informed Language Models Are Protein Designers

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.194159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation f540e3be-e341-42f6-af36-1577547af512 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 15

Resolution
unresolved
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:09.313410Z digest=sha256:68a9a1bd2526fcdcecb4d6bef8f3ea153f4d7d143aa3614630ca874dd56baab0

Observation b61ce0f0-3e92-42be-9acd-8ec51a33f714 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.835745Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:09.463803Z digest=sha256:af91c96862e579c96c88c874fe3040e1dd824871826a9ee956623ef6184b4ffb

Observation 845a05a9-76e5-4317-a454-6b3e8d5b1be5 · outbound

This paper cites PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020.

Improving Protein Sequence Design through Designability Preference Optimization PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020

Reference 17

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 3f2cfc53-ba5f-4c6a-b2b1-30bc0c36ea6c · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 18

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.471632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 34c1f102-df3a-4f80-9188-fabbd9e0c52d · outbound

This paper cites ProteinBench: A Holistic Evaluation of Protein Foundation Models.

Improving Protein Sequence Design through Designability Preference Optimization ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-07T12:12:09.974745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:09.974745Z digest=sha256:a5354b70afd40b4974363c94e2e6a5df5294c757d7f61bd3dc38841f040255f4

Observation c1448df6-5d28-4510-ba04-9c9259ac8b6b · outbound

This paper cites Christiano, Jan Leike, Tom B.

Improving Protein Sequence Design through Designability Preference Optimization Christiano, Jan Leike, Tom B

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.265635Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 3d566225-5afd-4df3-8d11-c6b25a5e4479 · outbound

This paper cites https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/.

Improving Protein Sequence Design through Designability Preference Optimization https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.083292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:10.298914Z digest=sha256:4d3da54f2242e1fab4aa67ac3620eb091f58da049235e4cc4bf4c8493d70bff0

Observation b3d94b92-dc9c-46ad-b59d-55f741806825 · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025.

Improving Protein Sequence Design through Designability Preference Optimization DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.920335Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:10.461367Z digest=sha256:a98e682adfef011c8bcf85c830546f8d5a227eb9cb78a4061a39f47a2a4f6cfc

Observation f83dcc5d-4f4e-47b3-9b44-ab2db36b73d0 · outbound

This paper cites Ab initio characterization of protein molecular dynamics with AI2BMD.

Improving Protein Sequence Design through Designability Preference Optimization Ab initio characterization of protein molecular dynamics with AI2BMD

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.851862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 74e9f29f-9f9f-45f9-aa4a-7379c92b715c · outbound

This paper cites Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W.

Improving Protein Sequence Design through Designability Preference Optimization Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.659693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation ce64660c-dca7-4d12-be18-4484e1311fe3 · outbound

This paper cites Kinch, R.

Improving Protein Sequence Design through Designability Preference Optimization Kinch, R

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.468321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:10.868750Z digest=sha256:f5e51730ccce1d33fcbd845c9b4e1c6ee5915ab5b5b8916d15b6d213b83b4be2

Observation 46b073f5-423c-47af-92a6-0e51afd605ff · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 26

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:11.014273Z digest=sha256:7aed3ba212675160e5064f49376a760e4d685a1f94479e7a0564be4a55957e9a

Observation b2e9fe4e-baa3-4dd8-bb59-4e9abbbc1400 · outbound

This paper cites Manning, Stefano Ermon, and Chelsea Finn.

Improving Protein Sequence Design through Designability Preference Optimization Manning, Stefano Ermon, and Chelsea Finn

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.306389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 804b6a88-0724-43f8-8d1f-4ab45718be33 · outbound

This paper cites Gomez, Łukasz Kaiser, and Illia Polosukhin.

Improving Protein Sequence Design through Designability Preference Optimization Gomez, Łukasz Kaiser, and Illia Polosukhin

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.136501Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:11.356050Z digest=sha256:fe23263ecd4a6e588c83178c816a4e9c9a3a31169168f89d58057eb6aa56b75f

Observation f99cec6a-3cb1-44be-a9ae-2be9275f2f4e · outbound

This paper cites Learning inverse folding from millions of predicted structures.

Improving Protein Sequence Design through Designability Preference Optimization Learning inverse folding from millions of predicted structures

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.943807Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:11.539350Z digest=sha256:9008e7589cf591cb83cb3bb74ada46953927cee123f0b136eeb8086ece5b237a

Observation eee1b8b8-fbe8-47de-b6d5-68cb12069f3d · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 30

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:17.718407Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:11.692726Z digest=sha256:b4baf36ffb9a9ae9ead5d7eb6991e9ff61cec6ea8dc3a0900149594ded31e5a0

Observation b2918872-e99b-4c77-8689-59d44db28ae1 · outbound

This paper cites Nakou, Sebastian Lindner, Gavin Ayres, Lesley S.

Improving Protein Sequence Design through Designability Preference Optimization Nakou, Sebastian Lindner, Gavin Ayres, Lesley S

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.545074Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:11.888140Z digest=sha256:3f4308551a7568de71076a90b6b115b5da4f69faeae04340f5cb997d107ead3c

Observation c0a7b5da-b725-4842-b101-12f5e12fb116 · outbound

This paper cites Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024.

Improving Protein Sequence Design through Designability Preference Optimization Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.321653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.064793Z digest=sha256:a3aa65a5764499bd4fee394ad38f5a91c0ba32afbb6427d5c9c3dc9c2e95d04a

Observation 05b9a618-875e-4fc0-96c7-b19cd467ef0b · outbound

This paper cites Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025.

Improving Protein Sequence Design through Designability Preference Optimization Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.151456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.217191Z digest=sha256:c3eebee7e86b72f04a1c06947a8f733bee93fa47f6365d3e89d29b9e9947c438

Observation 3d1291ec-e201-4752-8828-e1f79dc13430 · outbound

This paper cites A General Theoretical Paradigm to Understand Learning from Human Preferences.

Improving Protein Sequence Design through Designability Preference Optimization A General Theoretical Paradigm to Understand Learning from Human Preferences

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.963653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.373676Z digest=sha256:7def390605d215d86fdacd9165855c07a86d6e086bbba31ecacea003483d2c4e

Observation da771f2d-8b0a-4ba6-a67a-3e474c2d0448 · outbound

This paper cites Liu, and Xuanhui Wang.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Xuanhui Wang

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.746479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.524103Z digest=sha256:d02a82da92bdcdf1843b72803a201fbbf526ffc38958b981fd6e1e5fed427add

Observation 000427cf-eae3-4b98-a095-893f0e343dbe · outbound

This paper cites SimPO: Simple Preference Optimization with a Reference-Free Reward.

Improving Protein Sequence Design through Designability Preference Optimization SimPO: Simple Preference Optimization with a Reference-Free Reward

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.609037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.690730Z digest=sha256:13a85287bd196c2861aed049c151153b80924deb5261a49dd0112808b3c4c95d

Observation bb228053-06d5-4e03-81ad-8d498a325946 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 37

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:16.378423Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.824852Z digest=sha256:2c2e7e1b15d0c09330afba4f636f4e9f2895ebb83e6d546703c4feb2803b5af4

Observation b92069dd-0cb0-4314-bbe1-8e5100a3bf59 · outbound

This paper cites The Llama 3 Herd of Models, November 2024.

Improving Protein Sequence Design through Designability Preference Optimization The Llama 3 Herd of Models, November 2024

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.198763Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:12.971901Z digest=sha256:a1922e81ee105af321587ea7e8d2c366d98f2bc82859eefc82dc7e0c9083cce9

Observation 50185078-b27c-4bc9-9743-3e1b3e693585 · outbound

This paper cites Berman, John Westbrook, Zukang Feng, Gary Gilliland, T.

Improving Protein Sequence Design through Designability Preference Optimization Berman, John Westbrook, Zukang Feng, Gary Gilliland, T

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.036068Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.139713Z digest=sha256:290eaf6797fbf96209c20ea419d46a2da59ca15d0edd5869a463a9231a73de45

Observation d5d5940f-8e84-4629-aaf0-f8ea471e7464 · outbound

This paper cites Ballard, Joshua Bambrick, Sebastian W.

Improving Protein Sequence Design through Designability Preference Optimization Ballard, Joshua Bambrick, Sebastian W

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.808729Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.301543Z digest=sha256:aaac03736828bb73504460e27045465a66bbb3950547861ad7e291414203bdec

Observation 2b3dd517-8cfe-422b-90cc-320a0eff7f60 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 41

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:15.622282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.468454Z digest=sha256:dba402213e0ee6b3268875f61d5cb5d914e0135712ff75882729357d321eda70

Observation 96f9a0fb-986b-431a-9939-963d48408a0e · outbound

This paper cites Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.423051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.640287Z digest=sha256:7d341d4eb657d0cefc3a92a07af09348c4cfacf3af03352155c87bfa9c53e9df

Observation ed509beb-2032-4162-8b9b-62704cf3adc4 · outbound

This paper cites Provably Robust DPO: Aligning Language Models with Noisy Feedback.

Improving Protein Sequence Design through Designability Preference Optimization Provably Robust DPO: Aligning Language Models with Noisy Feedback

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.237489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.774395Z digest=sha256:10f1bff4ac5ede0458af2bce2f1ae936824d1a8c5e5e225931a6c977941720ce

Observation c9cd7396-0fb0-4ea2-a89e-bf9a7185745f · outbound

This paper cites Liu, and Jialu Liu.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Jialu Liu

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.058823Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:13.899877Z digest=sha256:6242fd961d7986a8b3080ad652c9c63653fe1f1240a48bbac7f6bc09d0b319ac

Observation 8e71d8e0-ff20-4c12-99e2-54940b8b4b52 · outbound

This paper cites Model Alignment as Prospect Theoretic Optimization.

Improving Protein Sequence Design through Designability Preference Optimization Model Alignment as Prospect Theoretic Optimization

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.894163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:14.065811Z digest=sha256:cc0d6716f24e91ce32dd4e59e83b5573e671a1f577d8d98d55f9cc3112a7e7fa

Observation a3fc7719-a9fa-4705-97ce-588deb2af574 · outbound

This paper cites Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024.

Improving Protein Sequence Design through Designability Preference Optimization Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.735242Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:14.225058Z digest=sha256:daa62b75775594b9340bf2ecf340850de4c5393d7a871e761a605909f083c5bd

Observation e136365a-18d0-4fa0-8fbe-d2eb9d22e159 · outbound

This paper cites designability.

Improving Protein Sequence Design through Designability Preference Optimization designability

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.539902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T12:12:14.333339Z digest=sha256:427b1c3ca7c49ba1eecc027d5e8f2530a2e46bc92f7b1687e5a386daf412dce7

Pith citing papers

Observation 8f2eeb86-c8d2-4625-9aaa-101d7f166783 · inbound

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision cites this paper.

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision Improving Protein Sequence Design through Designability Preference Optimization

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-02T09:46:04.299810Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-02T09:46:04.299810Z digest=sha256:6af6b37c75736556294da60efaed1a48b5ab49dbde23feb219d302f2d60dbf7c