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Paper Citation Record · LEDGER

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates

As of 17 August 2026, this Paper Citation Record lists 96 of 96 outbound references and 1 inbound Pith citation observation for arXiv:2506.04219.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.04219 v2

Coverage vector

measured 96 of 96 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T10:52:49.295978Z

measured 97 of 97 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-16T06:30:59.297886+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T08:55:58.122334Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

96 of 96 outbound references displayed

  • verified exact0
  • verified fuzzy42
  • unresolved50
  • parse uncertain4
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 65d3323d-e73f-4fa0-8abb-39c84a37adc5 · outbound

This paper cites These blood cells originate from hematopoietic stem and progenitor cells (HSPCs), which have the capacity to differentiate into many blood cell fates.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates These blood cells originate from hematopoietic stem and progenitor cells (HSPCs), which have the capacity to differentiate into many blood cell fates

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.639583Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation dc51c46a-5c36-42e5-bb52-e03356a804b6 · outbound

This paper cites Different transitions between these types have been established in homeostasis, injury, and transplant [54].

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Different transitions between these types have been established in homeostasis, injury, and transplant [54]

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.705296Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.705296Z digest=sha256:27910e5a9f950e64334444219f583062aba92d06d3a4ba088544909687672d64

Observation fc06b7e5-b500-4893-8c8d-2f305ec7ff93 · outbound

This paper cites Wolpert, C.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wolpert, C

Reference 3

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.845807Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.845807Z digest=sha256:23a83d8455d00758506ca9d359b3a2dfa2150d4284a7a5ed46fa46f92431ffa6

Observation a835c2ca-9733-4a58-aa5c-53afd60a7459 · outbound

This paper cites Debat and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Debat and P

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.870583Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.870583Z digest=sha256:9c90ab75eb03d91dbf8fa47a1e23d09b037668b1a1e682eac0a112432fa57d14

Observation a9032c42-7b27-4975-9404-bba3fbaa80a9 · outbound

This paper cites Wagner,Robustness and evolvability in living systems(Princeton university press, 2013).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wagner,Robustness and evolvability in living systems(Princeton university press, 2013)

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.935486Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.935486Z digest=sha256:27564b8b5e96dc95929c730a02ffd2c1494c560d76d1dbc49a6752a745e1cbe1

Observation 01f04d5a-583f-48f1-be57-ffba64bfd0ad · outbound

This paper cites Takahashi and S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Takahashi and S

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.939818Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.939818Z digest=sha256:696e096048fc486dbc23277809b0098ba060f7046410196442202f61cbf26768

Observation 577df5ac-3253-4c16-a43c-3a2db65cdd3b · outbound

This paper cites Takahashi and S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Takahashi and S

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.943777Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.943777Z digest=sha256:353b81ae065944c576100354c4ef80d325a2518adf417e7cfd68b0d94240f52a

Observation f4b9dd5b-1733-4dbd-8ee6-8735946e74be · outbound

This paper cites Srivastava and N.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Srivastava and N

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.948242Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.948242Z digest=sha256:0181eebb3d25ccade4f4e5743f1c846428ce8c3a3a35987708bce102946e5d42

Observation 9b3f670c-7b98-49a4-81f0-31a0b2d701dc · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.952713Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.952713Z digest=sha256:ce893f98ac6a0e55510782c5eb4aafde5609e7e7a0de54756fb7fc9204dbbc9d

Observation 1c1373ec-b559-4f38-bd43-4d1053cc3b48 · outbound

This paper cites Trapnell, Genome research25, 1491 (2015).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Trapnell, Genome research25, 1491 (2015)

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.956822Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.956822Z digest=sha256:92099ee857b31bc2565d95d5bcad3932c6f18ec7eb2037e1c87ffcf4a5486b4a

Observation 9ad7063b-7d61-43fe-be37-ffc0dc71f643 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.960739Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.960739Z digest=sha256:bd70f0f44d320890137ccafd6e6eb54294b92e58e6ce74e8b753847d83b4029a

Observation 9ad7fbef-3b74-432c-bba5-26973000794e · outbound

This paper cites Svensson, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Svensson, R

Reference 12

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.964922Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.964922Z digest=sha256:94831ce4fb9b22cc7199ffcf39e745117292230ba49621565fd0f7dc4cc35b94

Observation 65b68f9a-d47d-49d6-b514-e2d8e74800f2 · outbound

This paper cites Jones, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Jones, J

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.968406Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.968406Z digest=sha256:f150c18f2727788e63f6be657b36649b9994daa83ea585fdab0215e40cd559d9

Observation 86377995-4bd3-43f4-92dc-072e0165ff9c · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 14

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.972186Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.972186Z digest=sha256:baa98066e185431a2f4bd0b21b7faa44345e4a69d5684afd3a7457805ed7f9ca

Observation eede122a-e5a9-4782-880a-6c4c34e79999 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 15

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.976075Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.976075Z digest=sha256:8f640d67afb1b6beac7873345b335e8f811d85467bca6037d5654cc532ab58d0

Observation 23e082fa-849a-4b38-94f2-96dda7aa099f · outbound

This paper cites L¨ ahnemann, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates L¨ ahnemann, J

Reference 16

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.979883Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.979883Z digest=sha256:f06bec2ecd5861ae07d18fcc174a42eb8653708d84d3fcd96c0e00e86c5025ca

Observation 5eae037d-8278-42a3-bb76-e4061400f502 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.983783Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.983783Z digest=sha256:6a5b6544ac0e41d0538357e46c420c86b3ad3660456feaff27e5d664d2fdb716

Observation 248d5158-ff4a-40a8-95a9-b58fe70a5467 · outbound

This paper cites Huang, Bioessays34, 149 (2012).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Huang, Bioessays34, 149 (2012)

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.359740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:48.987991Z digest=sha256:f18d871b72640d8e6076b77f9b79b1785b3ba1df817d025932dd5646f00e7ee6

Observation ab774264-c910-4962-bb9a-00ca2885e496 · outbound

This paper cites Thom,Structural stability and morphogenesis(CRC press, 2018).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Thom,Structural stability and morphogenesis(CRC press, 2018)

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.346239Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation cc022b7b-e316-45f0-9a5a-d3b3a416240a · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 20

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.332426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 1b360054-1e9c-460a-9bee-50e0c8bb34d2 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.998971Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.998971Z digest=sha256:8d00e095c05b8f4563c8bc650b945f0aff00cec6193bedd6a473e17a711673b8

Observation 469409b5-1de3-4025-946c-3c128343efc5 · outbound

This paper cites Moris, C.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Moris, C

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.308455Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation e5b63d8f-3b1b-4ec8-91cb-2c564ea48931 · outbound

This paper cites S´ aez, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, R

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.295353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.006454Z digest=sha256:40011c00de56d151cf0173781291b49f8f1e5f39767559251481c79a569a66f4

Observation 874f724f-5f5e-409a-a90c-37fad3a15cd6 · outbound

This paper cites Wang, Journal of Biological Physics48, 1 (2022).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wang, Journal of Biological Physics48, 1 (2022)

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.281987Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation db2b814c-1895-4a7c-ac10-5821cf2cbda7 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 25

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.269631Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation a2cde4de-d7bb-493a-b62e-760aee807662 · outbound

This paper cites Raju and E.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Raju and E

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.017862Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.017862Z digest=sha256:ee33b50362d113715edead468d854e7e8b31717d223013549f75a6ef9100d0c7

Observation 4c68535f-5f3a-4402-aae7-b3bbf1a89d9d · outbound

This paper cites Camacho-Aguilar, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Camacho-Aguilar, A

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.256351Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 8ec51f78-ebfb-41da-9745-51b72a86fca1 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 28

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.243963Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.025616Z digest=sha256:afd5ba2ee6a4017d577f92999d0f407f6fef4fd0c26609289e9e7f2fffe12243

Observation acba2358-328e-49a5-a1db-af164dc54d04 · outbound

This paper cites Mochulska and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Mochulska and P

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.230817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.029458Z digest=sha256:7f3f27fcee31fef400ba9a54e6d7f195fad0ac94fd47f40d8b44c2580f766dbe

Observation affdc702-0796-417c-9d30-576dffae926d · outbound

This paper cites S´ aez, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, J

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.216384Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.033367Z digest=sha256:a7125f9381c43d8a92f9bc479522f8efedc26e400f335380fc64facb0f9538f9

Observation 9aa9e008-cc8e-4fe5-8093-35b7162ef2bc · outbound

This paper cites Yampolskaya, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya, M

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.203613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.037203Z digest=sha256:4c72735e1e37dc59bc5b5bb48ece6b74ece4a4a48458d339f965074c2ed4be85

Observation 1f7f3686-1047-4da2-90c0-4d4f439459f7 · outbound

This paper cites Grishechkin, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Grishechkin, A

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.190584Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.040837Z digest=sha256:3c00670d46f7db51591703df528606c88a3963cd3f15ec2f4a403e55b6838d3f

Observation 0077adfb-3d85-4841-ba56-b99d261fa033 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 33

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.177327Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.044830Z digest=sha256:5c9c43b75f17d231a48bc20327dfa54d3019928a9ea6680aed070e08b856d593

Observation 78ddb2ce-7308-4d06-a627-b01268e252c4 · outbound

This paper cites Olsson, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Olsson, M

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.164058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation f2d3b166-e34a-4023-b994-44db9961966d · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.052671Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.052671Z digest=sha256:ef72cbad4ff96728f84e71d9d54b6a6461b87c5fc5b64cc613c6928b1d0149ad

Observation f58522ff-7b9d-439f-8441-c797367e3d51 · outbound

This paper cites Krotov and J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Krotov and J

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.140690Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

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Observation 21cf3bff-54e3-4c7c-9e15-59dcacdea406 · outbound

This paper cites Yampolskaya and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya and P

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.127965Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.060467Z digest=sha256:4c77b553f1d8bd5cfa505e14761b72931e00bc28b6b9adc7a277faad5c244e4b

Observation 79ef7d97-1f0d-4f77-8558-7173c547c4e5 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 38

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.115132Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.064184Z digest=sha256:6c08220fe4de9a953a6ad657eb8fe4801648a294c9337dd17f9ae65c6584ba22

Observation 1f8067c4-afae-41b7-9a92-62f787a143fb · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 39

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.102273Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.068047Z digest=sha256:b437c80f7eb8d52d899e3ca2e54beca68ac874c7afdeee0578ee4856ccdd8595

Observation c3d3801a-23ab-404b-92d1-709639f59866 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.089217Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.071908Z digest=sha256:38de334d09eb102158f0bcef758db6805ba5a683da4a08ab341c3cb03ba18053

Observation 4ae41d4f-78bc-40b4-a6b4-ffcf5ffaff20 · outbound

This paper cites Guo and J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Guo and J

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.076205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.076206Z digest=sha256:12a33465226feb3c67a243ea9668f75730c24f3c4f9e1e69d1f8cc482d6d9675

Observation e0108877-cab6-47b0-a8b2-7ac8739ce72a · outbound

This paper cites Ikonomou, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Ikonomou, M

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.064102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.080173Z digest=sha256:59c98d405e3f111bfd7c3497a4ce96c97ec899c404ad8426a46122ae18b0b1c7

Observation 99df218b-e2bf-4076-b183-fbba5a18f178 · outbound

This paper cites Smart and A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Smart and A

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.051564Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.084094Z digest=sha256:1adbc06e90e96ffda8557d0315672813c572582cc69933fce8a7e6422a30f739

Observation 4720fb82-e2d0-4c26-bb46-8740a27e7263 · outbound

This paper cites Karin, Development151, dev202997 (2024).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Karin, Development151, dev202997 (2024)

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.038894Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.088433Z digest=sha256:9400efff035dd5f27e00fe8c7cfcfc0797ebfa6b9e4212d4ef99da630a8060bb

Observation b58636c8-b2d6-4a37-b55b-37facbd4e9c3 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 45

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.025848Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.092355Z digest=sha256:f503501a40d76f849304f3bd9b862172d13ae650d02a1479653d98de8bc737a6

Observation 4fef2658-89e8-4d49-a305-051059af7de6 · outbound

This paper cites Souza and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Souza and P

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.013084Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.096787Z digest=sha256:e63f4c371bd140b707cf6fe7f02fd62870f599aef002f6e4995d27ce45200374

Observation 1b9f0263-6c5e-443a-a5bc-b41cfa2faa01 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 47

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.000066Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.100688Z digest=sha256:3563abaa2bf8e794009d7341568de4967f75fe3275706ff97a464b634094c796

Observation 9e48a014-26c9-4e21-afcb-f488b929b577 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 48

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.987627Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.104926Z digest=sha256:f5ca3fba5c189978708613609a36fe981db5b7bb177fede67f99c780aadf72b4

Observation c057015c-47d8-4d7b-903d-65ff6c3e1c5a · outbound

This paper cites Yampolskaya and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya and P

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.975187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.113224Z digest=sha256:6e1aaf02052143776f56e6e87f08f3154e15e468eb2ed760a7af810b6fac5f94

Observation 407827b1-16fb-41ca-9147-4a6474389414 · outbound

This paper cites Kanter and H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Kanter and H

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.963212Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.117171Z digest=sha256:be9095f670a0942320b9e0a091cba04d846e1113f84541ffc49bc579f96197d7

Observation 68a61f58-d793-401e-91e6-17f459febb18 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 52

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.950631Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.120955Z digest=sha256:daa293987e5ba58708b25a7bf7dac787c4726370c380eae936e84993726172e7

Observation d799fe5d-f4dd-4c20-a79a-020382e870e9 · outbound

This paper cites Bialek,Biophysics: searching for principles(Princeton University Press, 2012).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Bialek,Biophysics: searching for principles(Princeton University Press, 2012)

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.938572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.124565Z digest=sha256:b68bf3b87f991b16cfd7176ce3e25ab496a832ba3b38f9f7cb4fd9a391c2a2c1

Observation d386ef59-f775-4c46-be3e-4e7873e9db0f · outbound

This paper cites Newhouse and M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Newhouse and M

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.925942Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.128058Z digest=sha256:d272db63a25b0a930893bfa066553ff9b2e277273fe1f5fdb59afe94719cb2fd

Observation 6ef2dd3a-4684-4816-b468-cc11a918fb7c · outbound

This paper cites Weinreb, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Weinreb, A

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.912887Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.131986Z digest=sha256:abd1fbdb8457097758f507a6b662b09c8bcb401c4aec34623c6dd9ef545b107e

Observation 2ec6807b-d27c-412a-83c3-3657cd0ed275 · outbound

This paper cites Alysandratos, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Alysandratos, M

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.900336Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.135838Z digest=sha256:30e42ef8e0dd97fe3dbd447b425b5e81a311ccbc2ac80151737c73c58ed6ce9a

Observation 11deb820-6eab-4bc0-b8e1-d36e10d34ab8 · outbound

This paper cites Hawkins, S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Hawkins, S

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.887803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.140117Z digest=sha256:222ce1ff6aeaca20688740050528ec431c5645caddcb32fbb8da063be0ae26a4

Observation 56862ef1-4cd9-4049-aa21-d7196731ca26 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 58

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.875111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.144084Z digest=sha256:164ea2e2d7033cd69a284602bbff606fb0f7b3d5fc16b301cfb9dbf3ffc3dd0d

Observation 858f37ac-4ca6-4add-ab6d-87c42a1786fd · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 59

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.863027Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.147890Z digest=sha256:59b61b7b86331945047cae5b4282b4c58ce545b8b0ada3f138242d0c961d6310

Observation ace1fd66-72d4-419f-adb3-f003ae0a96f0 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 60

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.849897Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.151694Z digest=sha256:0d47ebc5652c01163278423d25849b94b42d9f0347d9ba67fdeced6f4a8168c1

Observation 373e59af-d9c2-4525-8ce1-4a8ccfa166bd · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 61

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.836797Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.155225Z digest=sha256:e6aae6b576351fb7738feb2c5b3ebc10452f1599e3b83a53de27ea9fa41effc4

Observation 4c635db8-d51e-4f98-9270-4b66d960e03e · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 62

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.823279Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.159773Z digest=sha256:0ee84c0687fa577f8961cd591c69847b4d70f103f974494a1f0482f179aae26f

Observation d769e76b-ee90-4051-a976-dfbcc8151868 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 63

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.809416Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.163621Z digest=sha256:d12bf33ab7599cf1566a2f9fefb5f0d822d4107fca7584ca8c4d9e09ff8b3ba9

Observation bbb95109-af0e-4b56-b2dd-944e894f0287 · outbound

This paper cites Pardo-Saganta, B.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Pardo-Saganta, B

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.786318Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.167356Z digest=sha256:2a3b27a8458d3cc7d37985f9fd2482a9211702c2e5c3a941562d49916d1215e6

Observation 89ca9de6-caa1-4e96-a261-217f49f65ce6 · outbound

This paper cites Goetz, H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Goetz, H

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.773113Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.171114Z digest=sha256:4d1b9d8784c9ce6bab6d71ca4288b7f77b114bb1ba375a700d260d505a7cad64

Observation 0cac5db2-1b0f-429c-be58-02d38141498d · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 66

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.759421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.174832Z digest=sha256:f47ca33d2eebd85a31acf2d933d7c27890bb7f65ec1973245cf8edb4477f91a6

Observation 9322644e-47d8-4170-a463-63e058fe2ffe · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 67

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.746226Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.178860Z digest=sha256:37ab959b74b17b2cb169e9fd18be59ca6d80e45d53edf4d8395af48bc42589a4

Observation 33a7343a-8274-46fb-aa72-d3728bfb421b · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 68

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.732781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.182756Z digest=sha256:f1eb63198f0e131959cfec9cb272421a3211a24fd6c3d5f09b22e76df3484bf3

Observation eaa6c2e5-b438-451e-95a6-7150a8346e92 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 69

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.719682Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.186303Z digest=sha256:10e5d49b1ccae84863a612236982ba52e5bbe4dc3fd7f9debf868a4362980152

Observation 02f18f12-1ab5-46ad-a6b9-67c7c0561ed7 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 70

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.707079Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.190276Z digest=sha256:878350c506339fcecfee7df64ed0a051de54cb91f630b3b28517f51a8557e0b7

Observation d2d04100-ad72-46b0-af43-68f866663647 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 71

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.693748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.194276Z digest=sha256:61d5af7585d6e9c5e0f7e243bd6f129a011fbe5fd47c6e38fa786a018f13bab6

Observation f228f641-4b93-4c68-907b-a27a5b33b3d3 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 72

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.681401Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.198239Z digest=sha256:4c434df59b29c07d3dc582e8ccb692e09208e64c7fa98c5e1d6534f8168e3c32

Observation 20606bd5-024e-4c1c-a768-38df717a8f94 · outbound

This paper cites Simulation details 8.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Simulation details 8

Reference 73

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.668411Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.202659Z digest=sha256:94b1c55eff39acd89f75baf6fc0b8a688bf05cce0f4d2a67830711e703f31cf6

Observation 1d44ee0b-21b4-4b5d-9b5c-aa00cf7aae10 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 74

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.655229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.206554Z digest=sha256:73dec1249798083cbb405efeb5418154b12e9e8b8bf61085793e1c3f0a0cb531

Observation c06d6e92-07bb-4801-b4bf-76cd4751369f · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 75

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.642812Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.210145Z digest=sha256:dc09b487c1f281085c9ddb47cc9f0509bbbf9a32adaeade64dd0d6db84b520e1

Observation d3f0b992-1677-4cfc-9c37-aeac7b0a9654 · outbound

This paper cites Limitations of the model 12 References 12 A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Limitations of the model 12 References 12 A

Reference 76

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.629015Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.214331Z digest=sha256:b7c82631a9264832c467c8ca2995e5cb57ba85e4414010989503e321035dbc81

Observation c7893f28-7be5-4f9b-8982-c91e6ef5426d · outbound

This paper cites As explained in Randet al.[1], two of the simplest bifurcations with three attractors are the binary cusp and the heteroclinic flip.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates As explained in Randet al.[1], two of the simplest bifurcations with three attractors are the binary cusp and the heteroclinic flip

Reference 77

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.615723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.218081Z digest=sha256:f025196e939e127cd2e1e52bd057621ede229b183403250ebac76f9bc831710d

Observation 570c5515-071e-4d18-8124-7af0552f05ff · outbound

This paper cites In our model, alignment with each cell type is given its own axis, set by the Hopfield-inspired order parametersm µ.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates In our model, alignment with each cell type is given its own axis, set by the Hopfield-inspired order parametersm µ

Reference 78

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.601398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.222083Z digest=sha256:c6e5f5c444187ebf256857f6ea0d39ab8afeba3f7d3e8545d4af9dbcf6234557

Observation fe1e9eeb-dd37-4234-aa82-fd184717cc64 · outbound

This paper cites Double cusp B.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Double cusp B

Reference 79

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.587679Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.226065Z digest=sha256:ba78cb92b6bd35178447ffdb6527ddd4bf2c9763fe2c319234ed7edc1b297a60

Observation 50bbdcf9-4995-4281-a548-190a79d37881 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 80

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.574577Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.229893Z digest=sha256:6eb89b6513fab2fc3a0010df98d4de126ce17747ee2540fdbdbf5c9007e5cada

Observation e8538158-2cd2-45cd-a34c-106534f50b0b · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 81

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.562213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.233723Z digest=sha256:9d7d7a5d476ddab1ffbe759e287471d0f55ae1686eb550d871e89e4d155ea564

Observation 219944fd-a717-4e20-bc18-0c5648102b1c · outbound

This paper cites For trans- forming from cell-type spacem µ to landscape space ˜x,˜y, we defineH=K −1.h x,y µ denote the entries ofHsuch that ˜x= P µ hx µmµ and ˜y= P µ hy µmµ.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates For trans- forming from cell-type spacem µ to landscape space ˜x,˜y, we defineH=K −1.h x,y µ denote the entries ofHsuch that ˜x= P µ hx µmµ and ˜y= P µ hy µmµ

Reference 82

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.549640Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.237513Z digest=sha256:0b01738f551320c5959785146da52509df7a7a65979123016f708c7b953b804c

Observation bbd0b575-3362-4bf5-9bd2-192ad5e94e8f · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 83

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.537105Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.241187Z digest=sha256:562ec7d4e982a989334e08f1c6a3ce766704520c4c4091a7898b06ac69b3eeb7

Observation 57f54a95-cc22-4687-acc5-9a327c82bed2 · outbound

This paper cites In other words, the update rule of the Hopfield model causes this energy function to decrease.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates In other words, the update rule of the Hopfield model causes this energy function to decrease

Reference 84

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.524461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.245856Z digest=sha256:fad584f06b3d33e3f549b5423b585f4821818dcb048dd4803ac7b81ebb7df387

Observation 3bea87a1-d2e6-4bc7-858a-4e2e2ce21a60 · outbound

This paper cites Each cell experiences a landscape that is biased towards one fate or another by its neighboring cells.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Each cell experiences a landscape that is biased towards one fate or another by its neighboring cells

Reference 85

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.511526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.249945Z digest=sha256:7c29a6978b4a6217f69983e5a04879fbe01c22aa72dd79105882311ccbe7740a

Observation be3f5f38-30b1-4f8b-bd25-8231c39d4b32 · outbound

This paper cites The values for the signaling parameters (k, f) were varied as follows.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates The values for the signaling parameters (k, f) were varied as follows

Reference 86

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.498671Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.253778Z digest=sha256:5c015753b4414bb2e1b449e463214db720d84fe71da6664bd5a7c0ca51976cf2

Observation e5ace226-12af-45c9-9d80-8daa8cc988bc · outbound

This paper cites For the modern Hopfield network to converge to the correct pattern, it is necessary that the temperature is low enough such thate β ≫P, wherePis the number of stored patterns.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates For the modern Hopfield network to converge to the correct pattern, it is necessary that the temperature is low enough such thate β ≫P, wherePis the number of stored patterns

Reference 87

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.485223Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.257539Z digest=sha256:370513356bf9d0e5f0a7f98cecb05c38a0b772db909c63f21686efcc6030cb1d

Observation 1536a3af-98f2-42e7-ba32-ce54128ca806 · outbound

This paper cites The simulations were initiated at the initial attractor state with noise added to the gene expression:x i(t= 0) =ξ 0i +z i.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates The simulations were initiated at the initial attractor state with noise added to the gene expression:x i(t= 0) =ξ 0i +z i

Reference 88

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.471860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.261556Z digest=sha256:4814f0267e974d4e726345d73df9bdd863dd1b605c415764f278c1147f59ddcd

Observation 2dad4dc9-ee74-4df5-ba1c-dde32c962f51 · outbound

This paper cites However, this does not reflect biological reality.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates However, this does not reflect biological reality

Reference 89

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.457776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.265425Z digest=sha256:958e296de8380ec2b824b3b358cd0caf9878e064bfa41b6faf33579e0a9cd3f7

Observation 4d763ea7-2ba2-4962-af84-d50f21402b5a · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 90

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.443962Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.269316Z digest=sha256:7d2df4b87341cf16bfef2813b57a1cd5f65d523abd12978ca63b8feb7786c606

Observation d0321034-7d3a-42b2-b692-c35a987dcbf7 · outbound

This paper cites S´ aez, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, R

Reference 91

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.430058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.273118Z digest=sha256:dbf1f3dcc5fea7cac0e3ef6002c499bf5fcf38a8a6f2d479f0102bb1a73ced76

Observation 204c7b2c-5231-4fc9-801a-acd51891e03c · outbound

This paper cites Kanter and H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Kanter and H

Reference 92

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.414756Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.276987Z digest=sha256:059dc467b4683b5e10127c2824d674f8433b89105034ff62e3c0b43402c61775

Observation ba372104-5cd4-45b0-ad96-a6b8e81d6a9e · outbound

This paper cites Chaudhry, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Chaudhry, J

Reference 93

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.400678Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.280753Z digest=sha256:13eaab0b47332209d8180803e8c3ebd61fe3102b20bd72188867252ccd095e0c

Observation 17d6d8ba-7fb6-4fa0-be29-7e93b5303573 · outbound

This paper cites Large Associative Memory Problem in Neurobiology and Machine Learning.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Large Associative Memory Problem in Neurobiology and Machine Learning

Reference 94

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.284365Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.284365Z digest=sha256:36ef4c08e65d7ca797fa67feed0263fc0d67e74c5482e431bfc11ec42b5d41c3

Observation e1a077cd-091f-4fbe-a82e-bffe4efd9c3e · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 95

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.386594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.288265Z digest=sha256:cc8f6ca7a3dd166ab3d02f34fb11b76d00cd6bf428e58757889edf254ac380da

Observation c58911cb-b2a7-4c4f-b48b-08ef607358a9 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 96

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.372852Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.292048Z digest=sha256:8f1ce8d13921ff8059547091d906cff202964bd413a9a3d747ddd7d3cac54ba2

Observation 88e26a87-6b66-4470-b137-a8ca3c613ff8 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 97

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.358987Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=pdf_text observed=2026-08-07T10:52:49.295978Z digest=sha256:16fab79f62a68e8bc00b4b54e4969caf76bcdf68625d9e28d4901f762ca4062e

Pith citing papers

Observation c361895a-6780-4b36-b8de-5fc8de1a35e9 · inbound

Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees cites this paper.

Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-04T08:55:58.122334Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-04T08:55:58.122334Z digest=sha256:e3bd60a64f3c494c1f501c7ec371a764c5c8c4c09219d97754d7e97e53c17ac7