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Paper Citation Record · LEDGER

Do Protein Transformers Have Biological Intelligence?

As of 22 August 2026, this Paper Citation Record lists 76 of 76 outbound references and 0 inbound Pith citation observations for arXiv:2506.06701.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.06701 v1

Coverage vector

measured 76 of 76 reference resolution

Typed states for the displayed outbound observations.

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measured 76 of 76 standing notices

One-hop event checks from named stored sources.

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measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

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measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

76 of 76 outbound references displayed

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External citation measurements

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Outbound references

Observation d18c9e46-f515-4b33-bad7-a71249350969 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 1

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Observation b8ec6bbd-a370-4561-9399-c9fde4f23ddc · outbound

This paper cites Unified rational protein engineering with sequence-based deep representation learn- ing.

Do Protein Transformers Have Biological Intelligence? Unified rational protein engineering with sequence-based deep representation learn- ing

Reference 2

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This paper cites Jaakkola.

Do Protein Transformers Have Biological Intelligence? Jaakkola

Reference 3

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Observation cf5fea47-0ef7-4113-9792-bbd8b2b8f70d · outbound

This paper cites Vivit: A video vision transformer.

Do Protein Transformers Have Biological Intelligence? Vivit: A video vision transformer

Reference 4

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Observation 186240e5-e3ae-4e76-8b30-d80c12f2d50e · outbound

This paper cites Layer Normalization.

Do Protein Transformers Have Biological Intelligence? Layer Normalization

Reference 5

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Observation 03f2ab7a-eb79-4e9e-90c2-4c7ab59bd05e · outbound

This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.

Do Protein Transformers Have Biological Intelligence? Accurate prediction of protein structures and interactions using a three-track neural network

Reference 6

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Observation 60a8b682-8bcf-4bb4-854a-4e7a0a08d000 · outbound

This paper cites Beit: BERT pre-training of image transformers.

Do Protein Transformers Have Biological Intelligence? Beit: BERT pre-training of image transformers

Reference 7

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Observation 9435c683-9846-480c-a686-7fe21afefb4e · outbound

This paper cites GAM: explainable visual similarity and classification via gradient ac- tivation maps.

Do Protein Transformers Have Biological Intelligence? GAM: explainable visual similarity and classification via gradient ac- tivation maps

Reference 8

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Observation 1fbed2a2-dabf-44b3-86e9-29fb54b53edb · outbound

This paper cites Emerging properties in self-supervised vision transformers.

Do Protein Transformers Have Biological Intelligence? Emerging properties in self-supervised vision transformers

Reference 9

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Observation 28cb1c92-704d-42f8-81d5-a008acd4a187 · outbound

This paper cites Balasubramanian.

Do Protein Transformers Have Biological Intelligence? Balasubramanian

Reference 10

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Observation 4cd6d3cf-ace2-494d-9fe8-4d4e51c9f3af · outbound

This paper cites Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers.

Do Protein Transformers Have Biological Intelligence? Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers

Reference 11

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Observation a3827541-5bba-42d4-b04f-c584a64ddf51 · outbound

This paper cites Transformer interpretability beyond attention visual- ization.

Do Protein Transformers Have Biological Intelligence? Transformer interpretability beyond attention visual- ization

Reference 12

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Observation 89d1923e-82e9-4925-a193-d0ecd45a6540 · outbound

This paper cites Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent.

Do Protein Transformers Have Biological Intelligence? Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent

Reference 13

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This paper cites GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations.

Do Protein Transformers Have Biological Intelligence? GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations

Reference 14

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This paper cites The dark side of explanations: Poisoning recommender systems with counterfactual examples.

Do Protein Transformers Have Biological Intelligence? The dark side of explanations: Poisoning recommender systems with counterfactual examples

Reference 15

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Observation 70c7f453-6d5a-4b9b-bb55-3405a3a211f1 · outbound

This paper cites Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis.

Do Protein Transformers Have Biological Intelligence? Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis

Reference 16

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Do Protein Transformers Have Biological Intelligence? Electra: Pre- training text encoders as discriminators rather than generators

Reference 17

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This paper cites Real time image saliency for black box classifiers.

Do Protein Transformers Have Biological Intelligence? Real time image saliency for black box classifiers

Reference 18

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Do Protein Transformers Have Biological Intelligence? Ramaswamy

Reference 19

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Do Protein Transformers Have Biological Intelligence? BERT: pre-training of deep bidirectional transformers for language understanding

Reference 20

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This paper cites An image is worth 16x16 words: Transformers for image recognition at scale.

Do Protein Transformers Have Biological Intelligence? An image is worth 16x16 words: Transformers for image recognition at scale

Reference 21

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Observation 6e1c9d14-9e3c-4fbe-a3d9-2aa6af9b3f4c · outbound

This paper cites Muscle: a multiple sequence alignment method with reduced time and space complexity.

Do Protein Transformers Have Biological Intelligence? Muscle: a multiple sequence alignment method with reduced time and space complexity

Reference 22

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This paper cites Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021.

Do Protein Transformers Have Biological Intelligence? Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021

Reference 23

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This paper cites Backward recursive class activation map refinement for high resolution saliency map.

Do Protein Transformers Have Biological Intelligence? Backward recursive class activation map refinement for high resolution saliency map

Reference 24

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This paper cites Protein complex prediction with alphafold-multimer.

Do Protein Transformers Have Biological Intelligence? Protein complex prediction with alphafold-multimer

Reference 25

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This paper cites Multiscale vision transformers.

Do Protein Transformers Have Biological Intelligence? Multiscale vision transformers

Reference 26

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This paper cites Pfam: the protein families database.

Do Protein Transformers Have Biological Intelligence? Pfam: the protein families database

Reference 27

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This paper cites Understanding deep networks via extremal perturbations and smooth masks.

Do Protein Transformers Have Biological Intelligence? Understanding deep networks via extremal perturbations and smooth masks

Reference 28

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This paper cites Fong and Andrea Vedaldi.

Do Protein Transformers Have Biological Intelligence? Fong and Andrea Vedaldi

Reference 29

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This paper cites Axiom- based grad-cam: Towards accurate visualization and explanation of cnns.

Do Protein Transformers Have Biological Intelligence? Axiom- based grad-cam: Towards accurate visualization and explanation of cnns

Reference 30

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This paper cites Girshick.

Do Protein Transformers Have Biological Intelligence? Girshick

Reference 31

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This paper cites Deep residual learning for image recognition.

Do Protein Transformers Have Biological Intelligence? Deep residual learning for image recognition

Reference 32

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This paper cites Learning inverse folding from millions of predicted structures.

Do Protein Transformers Have Biological Intelligence? Learning inverse folding from millions of predicted structures

Reference 33

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This paper cites Exploring evolution-aware & -free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware & -free protein language models as protein function predictors

Reference 34

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Observation 3bd1ede6-45b1-486f-b429-917f868dc43b · outbound

This paper cites Exploring evolution-aware &-free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware &-free protein language models as protein function predictors

Reference 35

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Observation 0b127913-10d0-4c77-bc97-f417e0af739e · outbound

This paper cites Deep networks with stochastic depth.

Do Protein Transformers Have Biological Intelligence? Deep networks with stochastic depth

Reference 36

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raw_fallback, observed 2026-08-07T05:57:41.934395Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:35.612587Z digest=sha256:f51d4e8e474cb59cf07c2748524eefb4c639215a3c2e4c910b0a271875f8aa93

Observation ecc77feb-9764-46cf-b6ee-cf27b2a0bf5f · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 37

Resolution
unresolved
raw_fallback, observed 2026-08-07T05:57:41.916972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:35.693170Z digest=sha256:2b2137c32eb65a053e8eda493e560acbbf3b31c31f0d426bbbeebd48f9deba8a

Observation 283584a5-f5d5-4394-ad01-cd3bff72da33 · outbound

This paper cites Lay- ercam: Exploring hierarchical class activation maps for localization.

Do Protein Transformers Have Biological Intelligence? Lay- ercam: Exploring hierarchical class activation maps for localization

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.900247Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:35.847267Z digest=sha256:67a5862c07cf9b429ae7b9b748a65bb3bcc6459f53e1a4c67f548c8407836e11

Observation 56ee7267-7edc-4742-bc31-5ba033501ca6 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Do Protein Transformers Have Biological Intelligence? Highly accurate protein structure prediction with alphafold

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:36.008304Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:36.008304Z digest=sha256:667169ddcd71106ac5ae95ec2f2331187595ce3aecc5073b71f491452db3340a

Observation f68b1fc1-7a82-40a3-8196-1b63933af045 · outbound

This paper cites Cai, James Wexler, Fernanda B.

Do Protein Transformers Have Biological Intelligence? Cai, James Wexler, Fernanda B

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.873741Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.168117Z digest=sha256:5c64b9763a89ff55818514a50fc5469ed9f7c92f126565e2eb9f00e54a77d003

Observation 8f6991d2-7f80-4e5c-bdab-e96e4630cb8e · outbound

This paper cites Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery.

Do Protein Transformers Have Biological Intelligence? Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.857069Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.321316Z digest=sha256:cc97ba5c684dab2924a72ab19ab3ea2a53cde54f3695af841825b421498360a5

Observation 504bf1bc-3043-4e82-bd5a-bf91f579abf3 · outbound

This paper cites Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former.

Do Protein Transformers Have Biological Intelligence? Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.841656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.455800Z digest=sha256:147c897a95ef9622022e4c0331973ca3b9a88be4db278f6a822f97ab16ca9868

Observation 899e5712-f219-4625-84b5-e9d32a3c4a5c · outbound

This paper cites An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions.

Do Protein Transformers Have Biological Intelligence? An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.825397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.647741Z digest=sha256:3e6fe1c7ba176a884a852becbb1f526fbef52c230b4628f2a8795d32fc275419

Observation 9e32778c-fded-43f2-884b-bd844e888834 · outbound

This paper cites Towards robust vision trans- former via masked adaptive ensemble.

Do Protein Transformers Have Biological Intelligence? Towards robust vision trans- former via masked adaptive ensemble

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.809374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.793509Z digest=sha256:8098c9b616244f97f80bda101cba65d7a0c72e8b4133dd23c6b4726a308d695e

Observation fc194084-1cc3-41c2-8497-e1a5344e863a · outbound

This paper cites Comprehensive transformer-based model architecture for real-world storm predic- tion.

Do Protein Transformers Have Biological Intelligence? Comprehensive transformer-based model architecture for real-world storm predic- tion

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.793992Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:36.935367Z digest=sha256:f103aab8206d7c0d39faa3d318fabd9615e788f1e768b1ae362b70db9c8340ab

Observation e8ad086c-48f1-4f9d-a5c5-454f441c1e03 · outbound

This paper cites Swin transformer: Hierarchical vision transformer using shifted windows.

Do Protein Transformers Have Biological Intelligence? Swin transformer: Hierarchical vision transformer using shifted windows

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.779219Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.069131Z digest=sha256:7b5c842aed791cb0a6ef6a7e5b7d2fdaf89ad14a9261c0bcf431c07f446ccade

Observation e06838d4-5bd4-4905-9037-bb244dc838f6 · outbound

This paper cites Sgdr: Stochastic gradient descent with warm restarts.

Do Protein Transformers Have Biological Intelligence? Sgdr: Stochastic gradient descent with warm restarts

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.763420Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.238192Z digest=sha256:48a6dbdf1adab75bb32814e8ea01a3366c6866ee960ed0419ed36317111d7368

Observation 8cae4fba-e2cc-44be-931d-8cd8f238d464 · outbound

This paper cites Decoupled weight decay regularization.

Do Protein Transformers Have Biological Intelligence? Decoupled weight decay regularization

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:37.346467Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:37.346467Z digest=sha256:a488b85d8917bd53e16159250f6f901c96c96caf050b9ae83e00cc1e2157b43a

Observation 4262542d-1011-4386-86b2-7cd0334e3517 · outbound

This paper cites Lundberg and Su-In Lee.

Do Protein Transformers Have Biological Intelligence? Lundberg and Su-In Lee

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.735342Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.456424Z digest=sha256:ecbc4855587a35845be4e5c7df00fd40714cf9575edbb5c611ef3ca175b89ecf

Observation a7494afb-7373-44b2-a258-320b7f883394 · outbound

This paper cites Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures.

Do Protein Transformers Have Biological Intelligence? Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.720237Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.560130Z digest=sha256:43ed8686415a46fd5f770ea31df37e116ad49ee675934a45e520aa379466a932

Observation 0290c4fc-804a-457d-80c9-67d80de7b4da · outbound

This paper cites Visualizing deep convolutional neural networks using natural pre-images.

Do Protein Transformers Have Biological Intelligence? Visualizing deep convolutional neural networks using natural pre-images

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.705458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.643365Z digest=sha256:a9c06a4ef03488f8afef4980a03d35ec7a3e908e2aa6166f6edf1feff78cd906

Observation e658bf7d-5b94-44a1-8088-eccb0da84b27 · outbound

This paper cites The comprehensive antibiotic resistance database.

Do Protein Transformers Have Biological Intelligence? The comprehensive antibiotic resistance database

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.689862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.773792Z digest=sha256:c49c8a97854e4bcbc3290faf1aa0eff58e1712006d6d008548e3227fc0372972

Observation cae86fe3-422b-410a-ac92-498ccfc3341d · outbound

This paper cites Language models enable zero-shot prediction of the effects of mutations on protein function.

Do Protein Transformers Have Biological Intelligence? Language models enable zero-shot prediction of the effects of mutations on protein function

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.674831Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.883874Z digest=sha256:e9b49b3615668771f2f0e6ae3bf7feec3da748a90ee9b3ced36acd60edfbced6

Observation b639c873-1d1f-4ddc-a3b5-e16205b976a4 · outbound

This paper cites Protein data bank (pdb), 2023.

Do Protein Transformers Have Biological Intelligence? Protein data bank (pdb), 2023

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.659193Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:37.958655Z digest=sha256:506bc8f3ba5f34500f32e5ab635a9aa6e7fcfad088f6b0204ddaac53a63431a7

Observation 1181742e-b13e-421b-9a55-b90e766f92a3 · outbound

This paper cites RISE: randomized input sampling for explanation of black-box models.

Do Protein Transformers Have Biological Intelligence? RISE: randomized input sampling for explanation of black-box models

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.643235Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.066807Z digest=sha256:ab2a17b4313943718c56121491ca3b1944fedd45afac1bcb99495056768a06b9

Observation ca9b80fd-8ef9-44b6-9c6e-0ac2b2ab7b2a · outbound

This paper cites Evaluating protein transfer learning with tape.

Do Protein Transformers Have Biological Intelligence? Evaluating protein transfer learning with tape

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.628164Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.142169Z digest=sha256:19a2f9283ccc1325319d20b37aa2ad2a276f2a126632b45e9efe20955d686137

Observation 686d88a5-98ee-4dba-accf-0d65b20f428d · outbound

This paper cites Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives.

Do Protein Transformers Have Biological Intelligence? Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.610461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.238574Z digest=sha256:d76ec371755ed3e38f950cec13a4c19ed838516827e02a3c1620753a032b0a45

Observation 300652dd-e975-40af-a283-1e366c03feee · outbound

This paper cites Trans- former protein language models are unsupervised structure learners.

Do Protein Transformers Have Biological Intelligence? Trans- former protein language models are unsupervised structure learners

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.595527Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.352073Z digest=sha256:debd4e4345b078e42442850db0002c8caf6ec210989d5df805711eb1938d74f7

Observation fead9bd7-6ff2-454d-b335-92498d7516de · outbound

This paper cites Deep generative models of genetic variation capture the effects of mutations.

Do Protein Transformers Have Biological Intelligence? Deep generative models of genetic variation capture the effects of mutations

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.579645Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.448250Z digest=sha256:f50be1e34de14cc5b1ecc91660c77687614336914ebfcc5ebff91ca5fa255e0d

Observation 0cad6645-2de9-4d2d-b7d5-8006ea375a1b · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

Do Protein Transformers Have Biological Intelligence? Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.560612Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.568098Z digest=sha256:fbe5230a8e724821d4559f4f3880de97843337c95161c6291e75aecade3d0139

Observation 6ab03516-f970-4fe2-845c-f9ac4e37f8dd · outbound

This paper cites High-resolution image synthesis with latent diffusion models.

Do Protein Transformers Have Biological Intelligence? High-resolution image synthesis with latent diffusion models

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.543357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.664570Z digest=sha256:3a6b225c500dbe155cfdb71fb3a9abd6c67b5c78b5744bb64c04536fae2ce7a5

Observation d700e65c-c481-4c35-9384-d46c1c764343 · outbound

This paper cites Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra.

Do Protein Transformers Have Biological Intelligence? Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.526195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.775160Z digest=sha256:4f672527407d16117af258919fff444763d8f1d5e2cc25fe64e6f220df9f541c

Observation 1175002c-6a24-45a0-b973-333d83b09d0a · outbound

This paper cites Deep inside convolutional net- works: Visualising image classification models and saliency maps.

Do Protein Transformers Have Biological Intelligence? Deep inside convolutional net- works: Visualising image classification models and saliency maps

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.509145Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.876176Z digest=sha256:21395c2aa06c7a1230e1329426868bfe860b37c65c07fc44f6db758019b8e2b6

Observation 6b3a760e-f701-4f49-acd1-a6ea765ecd84 · outbound

This paper cites Full-gradient representation for neural network visual- ization.

Do Protein Transformers Have Biological Intelligence? Full-gradient representation for neural network visual- ization

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.492996Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:38.943197Z digest=sha256:b59e661bec0063caa0923e45c2850ad602843e0ae36380ffaff7dead0a1ca747

Observation b2d69b43-89d5-4c3e-a4e4-394f052f17f8 · outbound

This paper cites Axiomatic attribution for deep networks.

Do Protein Transformers Have Biological Intelligence? Axiomatic attribution for deep networks

Reference 65

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:39.021252Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:39.021252Z digest=sha256:51253e4fb30ee958b63dadcdc55843210d0c37e54e7afb92f0380da6efcec2d6

Observation 9e70d12c-5054-4e77-a07e-6ede4df93c8f · outbound

This paper cites Re- thinking the inception architecture for computer vision.

Do Protein Transformers Have Biological Intelligence? Re- thinking the inception architecture for computer vision

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.396937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.101129Z digest=sha256:db8f20e78922c6d6d01ef0bc09318714f30d7754eba17ef911fd279b63b815e3

Observation f4664a95-fd55-4235-80ca-1f563ccb65a7 · outbound

This paper cites Training data-efficient image transformers & distillation through attention.

Do Protein Transformers Have Biological Intelligence? Training data-efficient image transformers & distillation through attention

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.376354Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.177243Z digest=sha256:d3360bed542aa601dce5ecbd1cfeee6d8d03c82ac292c42c45937496984e1f99

Observation 99271eaa-d27e-4777-829b-683da062391a · outbound

This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

Do Protein Transformers Have Biological Intelligence? Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.358972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.266454Z digest=sha256:264cc2d6a6e98b3a69f24294a55c048b33cc2228391ae742cfb000de751dce63

Observation 8bce1e96-11c6-4794-8adf-a242ef2107a3 · outbound

This paper cites Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned.

Do Protein Transformers Have Biological Intelligence? Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.337851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.417225Z digest=sha256:915cec43a5a14111b23a430394f8ae5831b9164dd7d1074b261cbddb3e44b03b

Observation 1041fac2-e071-44c1-bf00-fa1409dd71e8 · outbound

This paper cites Score-cam: Score-weighted visual explanations for convolutional neural networks.

Do Protein Transformers Have Biological Intelligence? Score-cam: Score-weighted visual explanations for convolutional neural networks

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.322203Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.590352Z digest=sha256:a123b083091e1f7d4d042a326eff9b85b9bc90e43ab81b178b6a92679182d25e

Observation c5b1b9e6-3201-4ac1-809f-fef677bc5a19 · outbound

This paper cites Pyramid vision transformer: A versatile backbone for dense prediction without convolutions.

Do Protein Transformers Have Biological Intelligence? Pyramid vision transformer: A versatile backbone for dense prediction without convolutions

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.304158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.707866Z digest=sha256:428bc76543cd86cf3b339a380163fe012d484382276f0dc4bb404d194ec4d037

Observation 78802d70-2c6a-46d0-ae3c-eb07d40bc234 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 72

Resolution
unresolved
raw_fallback, observed 2026-08-07T05:57:41.287555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-22T06:32:14.747728+00:00.

source=pdf_text observed=2026-08-07T05:57:39.918531Z digest=sha256:37f7a63b6759f5063f708859b752a7d3d74a9c910e59e9683d259fae39787bf5

Observation f8075b43-9848-4e94-b344-a4e7c94ede81 · outbound

This paper cites Zeiler and Rob Fergus.

Do Protein Transformers Have Biological Intelligence? Zeiler and Rob Fergus

Reference 73

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verified fuzzy
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Observation 6598eed1-0d09-4a48-b5aa-862998a50888 · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.

Do Protein Transformers Have Biological Intelligence? Tm-align: a protein structure alignment algorithm based on the tm-score

Reference 74

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Observation 46ef4934-f632-4580-9705-0a73514e62be · outbound

This paper cites Learning deep features for discriminative localization.

Do Protein Transformers Have Biological Intelligence? Learning deep features for discriminative localization

Reference 75

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verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.119036Z

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Observation 6afb8fcf-ef0a-4542-a936-0a7bf27a6aab · outbound

This paper cites residue number.

Do Protein Transformers Have Biological Intelligence? residue number

Reference 192

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verified fuzzy
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Pith citing papers

No inbound Pith citation observations are available.