Paper Citation Record · LEDGER

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins

As of 20 August 2026, this Paper Citation Record lists 62 of 62 outbound references and 1 inbound Pith citation observation for arXiv:2507.09054.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.09054 v1

Coverage vector

measured 62 of 62 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T18:11:19.627077Z

measured 63 of 63 standing notices

One-hop event checks from named stored sources.

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measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T20:20:51.642799Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

62 of 62 outbound references displayed

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verified fuzzy36
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External citation measurements

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Outbound references

Observation a34a04d1-f5f0-4f0f-b3d6-2bb55874effb · outbound

This paper cites write newline.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins write newline

Reference 1

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Observation 291ecafc-6378-4355-820c-d8e8fdeacc57 · outbound

This paper cites an unresolved cited work.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 2

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Observation 8beb9d85-b981-4c3e-9595-9a2f3a3ae9c2 · outbound

This paper cites K., Boyles, F., Georges, G., Bujotzek, A., and Deane, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins K., Boyles, F., Georges, G., Bujotzek, A., and Deane, C

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:25.064822Z

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Observation 5c450f0b-6e5c-4197-97d5-a7d88e418e17 · outbound

This paper cites J., Bambrick, J., Bodenstein, S.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins J., Bambrick, J., Bodenstein, S

Reference 4

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Observation d9cff357-ff18-47bc-a723-04d9f1380798 · outbound

This paper cites J., Berenberg, D., Fisk, I., Zanichelli, N., et al.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins J., Berenberg, D., Fisk, I., Zanichelli, N., et al

Reference 5

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Observation 18a97f80-a557-4fe5-8c05-69f90bc86c26 · outbound

This paper cites A., Smorodina, E., Cotet, T.-S., Flem-Karlsen, K., Frank, R., Mehta, B.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins A., Smorodina, E., Cotet, T.-S., Flem-Karlsen, K., Frank, R., Mehta, B

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:24.893320Z

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Observation eec5ccff-793d-4a60-8a17-efa1b90a67bc · outbound

This paper cites M., and Chothia, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins M., and Chothia, C

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:24.746196Z

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Observation e26877fc-4019-4807-994b-983506b13987 · outbound

This paper cites F., Leaver-Fay, A., Jeliazkov, J.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins F., Leaver-Fay, A., Jeliazkov, J

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:24.671986Z

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Observation 91d0417a-278d-4694-8f1c-6d77f6b75339 · outbound

This paper cites R., Wang, J., Cong, Q., Kinch, L.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins R., Wang, J., Cong, Q., Kinch, L

Reference 9

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Observation c90d24fb-74ac-49f2-85fd-033ec5b4e666 · outbound

This paper cites A structure-based drug discovery paradigm.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins A structure-based drug discovery paradigm

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:24.581737Z

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Observation 3b0b8768-0ab0-4999-b264-90ae7a3e0bea · outbound

This paper cites Curriculum learning.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Curriculum learning

Reference 11

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Observation 1e959016-d96d-4b14-83b1-899df4f8fc52 · outbound

This paper cites M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T

Reference 12

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Observation 755ac548-72c7-4f82-bdb4-df2769be425a · outbound

This paper cites C., Melo, M.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins C., Melo, M

Reference 13

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Observation 31820dbd-6d08-4486-a8f0-e9e67d872971 · outbound

This paper cites and Thornton, J.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and Thornton, J

Reference 14

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Observation fb50129a-318a-403b-920f-de303d7f6347 · outbound

This paper cites J., and Thornton, J.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins J., and Thornton, J

Reference 15

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Observation e400f35c-7469-4c8f-8bf2-e1c0bb00da04 · outbound

This paper cites and Porter, L.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and Porter, L

Reference 16

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Observation 611c53b2-c220-417e-9c7d-603f5a25cd9b · outbound

This paper cites D., Liao, Y., Kinch, L.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins D., Liao, Y., Kinch, L

Reference 17

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 18

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This paper cites C., Roy, A., Maghsoud, Y., Polara, S., Debnath, T., and Cisneros, G.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins C., Roy, A., Maghsoud, Y., Polara, S., Debnath, T., and Cisneros, G

Reference 19

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 20

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This paper cites and Deane, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and Deane, C

Reference 21

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Observation e3b838d4-2662-4c71-843d-9867fec2ca55 · outbound

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 22

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 23

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Observation 9fdd542f-6a5d-43d8-ac9c-c0128370baa2 · outbound

This paper cites Esm cambrian: Revealing the mysteries of proteins with unsupervised learning, 2024.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Esm cambrian: Revealing the mysteries of proteins with unsupervised learning, 2024

Reference 24

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Observation 210f3445-1eb4-44bd-8976-332da7cdb4c2 · outbound

This paper cites Protein complex prediction with alphafold-multimer.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Protein complex prediction with alphafold-multimer

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:23.345218Z

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Observation 7661b762-f7d3-44b7-93ae-4f48609cb742 · outbound

This paper cites Molecular insight into recognition of the cgrpr complex by migraine prevention therapy aimovig (erenumab).

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Molecular insight into recognition of the cgrpr complex by migraine prevention therapy aimovig (erenumab)

Reference 26

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Observation 8ffbeffc-cfe6-43d2-a632-34ca8ec5c143 · outbound

This paper cites C., Cagiada, M., and Deane, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins C., Cagiada, M., and Deane, C

Reference 27

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 28

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This paper cites Structure-based drug design with geometric deep learning.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Structure-based drug design with geometric deep learning

Reference 29

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Observation d429d105-ba8d-4bd8-8ba4-389d497e4c48 · outbound

This paper cites Alphafold meets flow matching for generating protein ensembles.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Alphafold meets flow matching for generating protein ensembles

Reference 30

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Observation 6271eaf8-bdc8-4788-9a43-054d4a46b0ad · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Highly accurate protein structure prediction with alphafold

Reference 31

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and Sander, C

Reference 32

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Observation 53fc21a0-fd7c-48d3-99e2-3aacb519eafb · outbound

This paper cites Gpu-accelerated homology search with mmseqs2.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Gpu-accelerated homology search with mmseqs2

Reference 33

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Observation 7201ee8c-b36a-4241-ac69-681b252ec297 · outbound

This paper cites and McCammon, J.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and McCammon, J

Reference 34

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Observation 6279b76d-ea70-4f80-b0fb-1ddf60c93b40 · outbound

This paper cites A., Cutting, D., Nissley, D., and Deane, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins A., Cutting, D., Nissley, D., and Deane, C

Reference 35

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Observation 8b4be636-6f70-49c2-95b1-bcba77d6a17b · outbound

This paper cites M., and Krawczyk, K.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins M., and Krawczyk, K

Reference 36

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This paper cites Pinder: The protein interaction dataset and evaluation resource.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Pinder: The protein interaction dataset and evaluation resource

Reference 37

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Observation 4dd124e6-096b-4f29-8e4e-9da015ec2ae4 · outbound

This paper cites J., Guru, A., Lash, B., Saito, M., Macrae, R.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins J., Guru, A., Lash, B., Saito, M., Macrae, R

Reference 38

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This paper cites H., Yadollahpour, P., Watkins, A., Frey, N.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins H., Yadollahpour, P., Watkins, A., Frey, N

Reference 39

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 40

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Observation a87c1850-a43b-451f-b716-cc91b4711308 · outbound

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 41

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This paper cites A comprehensive review and comparison of existing computational methods for protein function prediction.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins A comprehensive review and comparison of existing computational methods for protein function prediction

Reference 42

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This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 43

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Observation 160c8868-e146-4578-bb66-beabf951490e · outbound

This paper cites Decoupled Weight Decay Regularization.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Decoupled Weight Decay Regularization

Reference 44

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This paper cites Generalizing to any diverse distribution: uniformity, gentle finetuning and rebalancing.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Generalizing to any diverse distribution: uniformity, gentle finetuning and rebalancing

Reference 45

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Observation b0a87ada-7e49-4105-98f7-23b2931294b4 · outbound

This paper cites Development of therapeutic antibodies for the treatment of diseases.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Development of therapeutic antibodies for the treatment of diseases

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.858679Z

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 47

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Observation a3455c97-8456-4456-890b-89b6775ea8ca · outbound

This paper cites S., Hopf, T.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins S., Hopf, T

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.634609Z

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Observation f4ac779c-fca7-4d92-83f9-0367375894a1 · outbound

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 49

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Observation 8522a893-ed4d-4691-afc4-d42d79a029e3 · outbound

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Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 50

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:11:21.569223Z

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Observation 50e5085c-3962-408f-acf6-c6fbc0bb9d81 · outbound

This paper cites H., Boyles, F., and Deane, C.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins H., Boyles, F., and Deane, C

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.494740Z

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Observation e31d2c99-afdd-47cd-a517-dce252516807 · outbound

This paper cites Boltz-2: Towards accurate and efficient binding affinity prediction.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Boltz-2: Towards accurate and efficient binding affinity prediction

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.426930Z

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Observation b6fd6386-126c-4e6f-99cf-6a1a4072af99 · outbound

This paper cites P., Abanades, B., Guloglu, B., Karuppiah, V., Harper, S., Raybould, M.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins P., Abanades, B., Guloglu, B., Karuppiah, V., Harper, S., Raybould, M

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.368795Z

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Observation a94e6867-dffe-4904-ac39-b24bf3971bd6 · outbound

This paper cites M., Schulze-Gahmen, U., and Wilson, I.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins M., Schulze-Gahmen, U., and Wilson, I

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.294766Z

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Observation 707ed530-dbd8-4a83-a526-d370d50c0cf7 · outbound

This paper cites A., Chu, L.-S., Mahajan, S.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins A., Chu, L.-S., Mahajan, S

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:21.234033Z

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Observation f577f9ec-cdf4-4358-be32-06c3c86a7ae3 · outbound

This paper cites an unresolved cited work.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Unresolved cited work

Reference 56

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:11:21.098456Z

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Observation 80ebad6b-4e4b-4216-be4a-08bd379eb0eb · outbound

This paper cites C., Fern \'a ndez-Quintero, M.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins C., Fern \'a ndez-Quintero, M

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:20.986130Z

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Observation ca71106d-0137-47cb-bbc8-ed60b1fe5d66 · outbound

This paper cites and S \"o ding, J.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and S \"o ding, J

Reference 58

Resolution: unresolved; no resolver link, observed 2026-08-06T18:11:19.396734Z

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Observation 8e70f136-c2d3-4928-9da8-344e07392bde · outbound

This paper cites D., Boitreaud, J., Dent, J., McPartlon, M., Meier, J., Reis, V., Rogozhonikov, A., and Wu, K.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins D., Boitreaud, J., Dent, J., McPartlon, M., Meier, J., Reis, V., Rogozhonikov, A., and Wu, K

Reference 59

Resolution: unresolved; no resolver link, observed 2026-08-06T18:11:19.438371Z

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Observation 14ed437a-6fb0-4267-b0c7-f14a4c3850bd · outbound

This paper cites and Mizuguchi, K.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins and Mizuguchi, K

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:20.845949Z

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Observation ea98fe76-92c6-4f77-95b7-e5775ed87fbc · outbound

This paper cites Boltz-1 democratizing biomolecular interaction modeling.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Boltz-1 democratizing biomolecular interaction modeling

Reference 61

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Observation 61e05214-98d3-4b65-83a1-4c6665d555a5 · outbound

This paper cites Foldbench: An all-atom benchmark for biomolecular structure prediction.

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins Foldbench: An all-atom benchmark for biomolecular structure prediction

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:11:20.758191Z

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Pith citing papers

Observation f6f93e0b-73b2-43c2-9a66-9d2baab9f269 · inbound

Tokenizing Loops of Antibodies cites this paper.

Tokenizing Loops of Antibodies Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-04T20:20:51.642799Z

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