Paper Citation Record · LEDGER

All-atom inverse protein folding through discrete flow matching

As of 17 August 2026, this Paper Citation Record lists 49 of 49 outbound references and 2 inbound Pith citation observations for arXiv:2507.14156.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.14156 v1

Coverage vector

measured 49 of 49 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T20:15:52.081305Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-10T16:25:35.505441Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-07-10T16:27:21.757401Z

Reference resolution

49 of 49 outbound references displayed

verified exact2
verified fuzzy28
unresolved19
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 4fab7bc4-4f6e-411e-8bc8-90c7602c5616 · outbound

This paper cites write newline.

All-atom inverse protein folding through discrete flow matching write newline

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.819955Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2c4a45f2-3de3-471b-9a6f-27fa521a4d95 · outbound

This paper cites J., Bambrick, J., et al.

All-atom inverse protein folding through discrete flow matching J., Bambrick, J., et al

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.826324Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5e4abde4-49e7-4fbc-b8cf-fa592ac60728 · outbound

This paper cites D., Ho, J., Tarlow, D., and Van Den Berg, R.

All-atom inverse protein folding through discrete flow matching D., Ho, J., Tarlow, D., and Van Den Berg, R

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.831382Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bad4f096-8f8e-4461-a662-981a2c7e9fd6 · outbound

This paper cites R., Watson, J.

All-atom inverse protein folding through discrete flow matching R., Watson, J

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:53.002684Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 74fefe3d-bf8d-48a7-aedf-b3aaff6f7283 · outbound

This paper cites A continuous time framework for discrete denoising models.

All-atom inverse protein folding through discrete flow matching A continuous time framework for discrete denoising models

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.986434Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 9660fee8-00fd-45a4-84a2-b712da1ba3be · outbound

This paper cites Generative flows on discrete state-spaces: Enabling multimodal flows with applications to protein co-design.

All-atom inverse protein folding through discrete flow matching Generative flows on discrete state-spaces: Enabling multimodal flows with applications to protein co-design

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.970014Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation c299a566-c38a-4541-a1bf-1219051bfa7c · outbound

This paper cites Chai-1: Decoding the molecular interactions of life.

All-atom inverse protein folding through discrete flow matching Chai-1: Decoding the molecular interactions of life

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.854400Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6bad77e1-f7db-45e4-918c-105fe5f6b48a · outbound

This paper cites J., Milles, L.

All-atom inverse protein folding through discrete flow matching J., Milles, L

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.951693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation daeffbc1-482d-498f-878e-484b12a9ad5b · outbound

This paper cites R., Pecoraro, R., An, L., Anishchenko, I., Glasscock, C., and Baker, D.

All-atom inverse protein folding through discrete flow matching R., Pecoraro, R., An, L., Anishchenko, I., Glasscock, C., and Baker, D

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.932899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 81b27153-ebd3-418d-b0a2-7eada02a24e7 · outbound

This paper cites Visual feature extraction by a multilayered network of analog threshold elements.

All-atom inverse protein folding through discrete flow matching Visual feature extraction by a multilayered network of analog threshold elements

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.911313Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 85e5f4a1-48c8-4e95-b765-4cba474aee58 · outbound

This paper cites an unresolved cited work.

All-atom inverse protein folding through discrete flow matching Unresolved cited work

Reference 11

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:15:52.894725Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation b586baa5-d1cc-4af6-b5d6-7768e38b201a · outbound

This paper cites an unresolved cited work.

All-atom inverse protein folding through discrete flow matching Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:15:52.875901Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation db1592a5-b292-4467-802e-04fcdc83fa0e · outbound

This paper cites T., Synnaeve, G., Adi, Y., and Lipman, Y.

All-atom inverse protein folding through discrete flow matching T., Synnaeve, G., Adi, Y., and Lipman, Y

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.858016Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 0e4d0a94-896e-4fef-a849-405b3bffbaf0 · outbound

This paper cites J., Goreshnik, I., Coventry, B., Bera, A.

All-atom inverse protein folding through discrete flow matching J., Goreshnik, I., Coventry, B., Bera, A

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.840557Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 18c82d1d-e010-4489-a979-06d9110948a3 · outbound

This paper cites Gaussian Error Linear Units (GELUs).

All-atom inverse protein folding through discrete flow matching Gaussian Error Linear Units (GELUs)

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.898432Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fb8cd5e7-c7ae-4117-b50a-beb875d8f4cd · outbound

This paper cites Argmax flows and multinomial diffusion: Learning categorical distributions.

All-atom inverse protein folding through discrete flow matching Argmax flows and multinomial diffusion: Learning categorical distributions

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.904241Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a9b996fa-d693-4186-af8a-cb77acd03c92 · outbound

This paper cites Learning inverse folding from millions of predicted structures.

All-atom inverse protein folding through discrete flow matching Learning inverse folding from millions of predicted structures

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.909112Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e75dbc38-579b-474d-8f9c-53265ebd630e · outbound

This paper cites Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer.

All-atom inverse protein folding through discrete flow matching Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer

Reference 18

Resolution: verified exact; local_arxiv, observed 2026-08-06T20:15:52.356125Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 45bcc1b6-2d65-438a-ad40-bedf7ccf58c5 · outbound

This paper cites Generative models for graph-based protein design.

All-atom inverse protein folding through discrete flow matching Generative models for graph-based protein design

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.811264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 6f7c023c-7beb-44b5-9bc8-183a57cd96a8 · outbound

This paper cites Unsupervised protein-ligand binding energy prediction via neural euler's rotation equation.

All-atom inverse protein folding through discrete flow matching Unsupervised protein-ligand binding energy prediction via neural euler's rotation equation

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.793837Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 00bdf37f-b89e-4c04-a6cd-0c2b11c05e5b · outbound

This paper cites K., Jamasb, A.

All-atom inverse protein folding through discrete flow matching K., Jamasb, A

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.775304Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 38799a42-0652-4da1-a639-56e58fc6ef2f · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

All-atom inverse protein folding through discrete flow matching Highly accurate protein structure prediction with alphafold

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.936735Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5d6addff-3519-4c4b-9a30-62b74ecdd472 · outbound

This paper cites J., Anischanka, I., Sumida, K.

All-atom inverse protein folding through discrete flow matching J., Anischanka, I., Sumida, K

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.744201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 450a96b2-23f5-4672-8375-7461020a4c9c · outbound

This paper cites and Zhang, Y.

All-atom inverse protein folding through discrete flow matching and Zhang, Y

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.725136Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation af4d44e7-3094-463b-9214-0dbb7be0e62e · outbound

This paper cites GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models.

All-atom inverse protein folding through discrete flow matching GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.952614Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0baa22e2-0ac3-4b10-9e9a-2a9a56078599 · outbound

This paper cites S., Lunegova, D.

All-atom inverse protein folding through discrete flow matching S., Lunegova, D

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.704127Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation d00824c0-9bd7-4386-87b0-b2fe0694ebeb · outbound

This paper cites and Jin, W.

All-atom inverse protein folding through discrete flow matching and Jin, W

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.685594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 857d346f-f5e6-4333-8300-421468e4c126 · outbound

This paper cites Spin2: Predicting sequence profiles from protein structures using deep neural networks.

All-atom inverse protein folding through discrete flow matching Spin2: Predicting sequence profiles from protein structures using deep neural networks

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.666175Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 6aaa6a96-64ce-4968-9611-f2db5560a525 · outbound

This paper cites Bindcraft: one-shot design of functional protein binders.

All-atom inverse protein folding through discrete flow matching Bindcraft: one-shot design of functional protein binders

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.648212Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation bf7f6331-048e-4ec6-9040-427c7dd4bd63 · outbound

This paper cites an unresolved cited work.

All-atom inverse protein folding through discrete flow matching Unresolved cited work

Reference 30

Resolution: unresolved; raw_fallback, observed 2026-08-06T20:15:52.629351Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 6c0b6883-13b6-429e-bb26-de69e78d187a · outbound

This paper cites and Xie, S.

All-atom inverse protein folding through discrete flow matching and Xie, S

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.984563Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8af2bfe0-8b58-4d36-b91c-c948b70df627 · outbound

This paper cites Z., Bezemek, Z., Patel, S., Rector-Brooks, J., Yao, S., Tong, A., and Chatterjee, P.

All-atom inverse protein folding through discrete flow matching Z., Bezemek, Z., Patel, S., Rector-Brooks, J., Yao, S., Tong, A., and Chatterjee, P

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.989669Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c1c84fa3-4627-44e8-bda0-bdcdbe28f852 · outbound

This paper cites Frame Averaging for Invariant and Equivariant Network Design.

All-atom inverse protein folding through discrete flow matching Frame Averaging for Invariant and Equivariant Network Design

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:51.995338Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 31e034ee-3104-472a-a432-ce44b56e5b8c · outbound

This paper cites an unresolved cited work.

All-atom inverse protein folding through discrete flow matching Unresolved cited work

Reference 34

Resolution: verified exact; doi, observed 2026-08-06T20:15:52.123611Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation f6f9663e-aaf5-4a64-b71d-763ac833dd3c · outbound

This paper cites W., Landthaler, M., Shub, D.

All-atom inverse protein folding through discrete flow matching W., Landthaler, M., Shub, D

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.600793Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation bc947946-2f56-4701-b569-388052387def · outbound

This paper cites P., Kumar, A., Ermon, S., and Poole, B.

All-atom inverse protein folding through discrete flow matching P., Kumar, A., Ermon, S., and Poole, B

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:52.011691Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation aed887ff-ff8c-48f8-8519-93f3c7268a18 · outbound

This paper cites Surfpro: Functional protein design based on continuous surface.

All-atom inverse protein folding through discrete flow matching Surfpro: Functional protein design based on continuous surface

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.571325Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 13f593a6-f80b-4aaf-82be-7a20a01ca721 · outbound

This paper cites and S \"o ding, J.

All-atom inverse protein folding through discrete flow matching and S \"o ding, J

Reference 38

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:52.022059Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b8f5256a-df70-4b99-91f5-2af016796ca8 · outbound

This paper cites Saprot: Protein language modeling with structure-aware vocabulary.

All-atom inverse protein folding through discrete flow matching Saprot: Protein language modeling with structure-aware vocabulary

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.542563Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 209c1684-a4c6-4d93-a4fc-18aabcffece8 · outbound

This paper cites and Ward, T.

All-atom inverse protein folding through discrete flow matching and Ward, T

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.526265Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation ea6e703e-7268-461b-a6d2-7807187f0bf0 · outbound

This paper cites Attention Is All You Need.

All-atom inverse protein folding through discrete flow matching Attention Is All You Need

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:52.038390Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d37a450b-b1ed-4f91-aacb-a50c35d6b4ec · outbound

This paper cites Digress: Discrete denoising diffusion for graph generation.

All-atom inverse protein folding through discrete flow matching Digress: Discrete denoising diffusion for graph generation

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.510300Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 9e4cc68e-8113-45a6-9077-966bd8dc9f03 · outbound

This paper cites Z., and Qi, Y.

All-atom inverse protein folding through discrete flow matching Z., and Qi, Y

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.493600Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 20cf9142-2276-4e4d-9e63-03c65736c078 · outbound

This paper cites Diffusion language models are versatile protein learners.

All-atom inverse protein folding through discrete flow matching Diffusion language models are versatile protein learners

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.476737Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation c8897b82-7e0c-46a1-99fc-8e2c6b678da4 · outbound

This paper cites L., Juergens, D., Bennett, N.

All-atom inverse protein folding through discrete flow matching L., Juergens, D., Bennett, N

Reference 45

Resolution: unresolved; no resolver link, observed 2026-08-06T20:15:52.060046Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e4ee8217-5925-40b4-b131-c15cfb031336 · outbound

This paper cites Graph denoising diffusion for inverse protein folding.

All-atom inverse protein folding through discrete flow matching Graph denoising diffusion for inverse protein folding

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.446614Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation f02ee88a-1787-4b5a-8d53-62b26aa8aa79 · outbound

This paper cites J., Brown, D., Burns-Kurtis, C.

All-atom inverse protein folding through discrete flow matching J., Brown, D., Burns-Kurtis, C

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.428464Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 2bd5cecb-d97c-487a-8ffa-6b631d4c6b5e · outbound

This paper cites Structure-informed language models are protein designers.

All-atom inverse protein folding through discrete flow matching Structure-informed language models are protein designers

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.410809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation a9664cd7-021b-484f-8981-6fd268b5796d · outbound

This paper cites Bridge-if: Learning inverse protein folding with markov bridges.

All-atom inverse protein folding through discrete flow matching Bridge-if: Learning inverse protein folding with markov bridges

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T20:15:52.392347Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Pith citing papers

Observation 69946677-b759-4255-890b-b7e74d1be32b · inbound

Discrete Flow Matching Policy Optimization cites this paper.

Discrete Flow Matching Policy Optimization All-atom inverse protein folding through discrete flow matching

Reference 16

Resolution: verified exact; arxiv_id, observed 2026-05-10T23:40:51.957471Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation b8403506-f861-4b27-a603-ef8a438ce9c4 · inbound

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder cites this paper.

UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder All-atom inverse protein folding through discrete flow matching

Reference 3

Resolution: verified exact; local_arxiv, observed 2026-07-10T16:27:21.759159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.