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Paper Citation Record · LEDGER

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN

As of 18 August 2026, this Paper Citation Record lists 23 of 23 outbound references and 1 inbound Pith citation observation for arXiv:2507.16978.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.16978 v1

Coverage vector

measured 23 of 23 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T15:05:25.176787Z

measured 24 of 24 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-29T11:47:02.193326Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-06-29T11:53:24.203583Z

Reference resolution

23 of 23 outbound references displayed

  • verified exact1
  • verified fuzzy14
  • unresolved8
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 25934a74-2b4e-46cc-9bf5-7b95fc2b29db · outbound

This paper cites write newline.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN write newline

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.117770Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.117770Z digest=sha256:b44335d640728282dfd40afae344043b5c607d5ad019fc3f0daa52b7c46f3723

Observation 6949ce44-2ca0-414a-90fb-2e3aae6f51f0 · outbound

This paper cites F., Gish, W., Miller, W., Myers, E.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN F., Gish, W., Miller, W., Myers, E

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.371196Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.121676Z digest=sha256:b74f5b28f315cc9ad49b04b9c3901628985006e9aaadb24617bb6b785d35f088

Observation 9ade6c58-92e4-4ab9-875c-328420acdc0e · outbound

This paper cites B., Lespiau, J.-B., Damoc, B., Clark, A., et al.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN B., Lespiau, J.-B., Damoc, B., Clark, A., et al

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.363178Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.124459Z digest=sha256:8019dabcf6d9530d19203bd23a513ca84fbd13b181d9f05e3c9df9195c116cd4

Observation ae3c10d3-b6b8-4dbb-b3d9-4e9726fb1593 · outbound

This paper cites H., Oteri, F., Dallago, C., Trop, E., de Almeida, B.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN H., Oteri, F., Dallago, C., Trop, E., de Almeida, B

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.354549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.127133Z digest=sha256:2c8a7f5333dddd4a4ed478b73a6c7c3bd85ae6cfcde956fb94bed855321cd5fe

Observation 20874b72-10f3-4771-810a-3d83ed5fdabb · outbound

This paper cites E., Lomeli, M., Hosseini, L., and Jegou, H.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN E., Lomeli, M., Hosseini, L., and Jegou, H

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.346861Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.130157Z digest=sha256:e107111fa5759647b1b79a08cb34f5dca92b25eaa0cc36beb7ef9e4acba98815

Observation 871f8ab7-8623-4cfd-abe1-239dbf10b3a0 · outbound

This paper cites A., Gillick, D., Bikel, D.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN A., Gillick, D., Bikel, D

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.338888Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.132910Z digest=sha256:0c96d9ccbf0d4a0e57186fb885c9804529fe678c0731fc8e3d19bd56068e9cbc

Observation d557d3b8-a859-4cca-98c5-f2fff69d4a72 · outbound

This paper cites Accelerating large-scale inference with anisotropic vector quantization.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Accelerating large-scale inference with anisotropic vector quantization

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.331093Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.135660Z digest=sha256:226deff1441130dd9d7d6ee0c1c0c6a6de7717171c42f6206ed0624d2e527e95

Observation 2aa9b4ac-4eeb-4ca8-98ee-d22e36e3e7c3 · outbound

This paper cites an unresolved cited work.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Unresolved cited work

Reference 8

Resolution
unresolved
raw_fallback, observed 2026-08-06T15:05:25.323220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.138475Z digest=sha256:7ba550bed22d622ecf1c25c5d862673e669415cb4a9e9542c887a128c2f27b5d

Observation 6fcede86-aeed-49de-911f-b11153ac32eb · outbound

This paper cites Billion-scale similarity search with gpus.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Billion-scale similarity search with gpus

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.140955Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.140955Z digest=sha256:b476079c34fe9ab8b03ddde9849d80c91068422cabbdcae8026cb6db79233ff4

Observation c2b897a7-7d9f-49c7-9f22-e053f076e0c6 · outbound

This paper cites Product quantization for nearest neighbor search.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Product quantization for nearest neighbor search

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.143403Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.143403Z digest=sha256:10e8fe487e9602e261999e80da30c237301dccb90a6b351bc930d778824d6b13

Observation bddbe1f4-e9e2-402c-979c-0fcc3c69e7bb · outbound

This paper cites Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.309765Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.146149Z digest=sha256:c4bb10b8c33028fb610df2526baa2569f11876ab8cba9bc51e3af8eba303ac7a

Observation e6fff5b6-fd30-42b7-b0f6-d9b21e0e550d · outbound

This paper cites an unresolved cited work.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-08-06T15:05:25.301081Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.148582Z digest=sha256:e48b72d709e3841cbb0ca2fce8909e04b76d5ca0f980d0a01065ead991b6594f

Observation 1b856e08-b34b-4da1-bcdb-6e68c9e2d1bf · outbound

This paper cites P., Mulaudzi, T.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN P., Mulaudzi, T

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.293417Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.151234Z digest=sha256:44190499770d84ba5f56978e3c63de25bd6cac352ae823aaf1ca79db6056fa30

Observation 2dcb8161-7cf2-4f33-9205-8293db826270 · outbound

This paper cites Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.285424Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.153930Z digest=sha256:0f332df8f6d51d1727226aa4413368d053c3871a91b8956413f0c170e05718d9

Observation 4b66ebda-5c3d-4686-9480-65afb6cb791e · outbound

This paper cites Leveraging large language models for metagenomic analysis.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Leveraging large language models for metagenomic analysis

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.275499Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.156365Z digest=sha256:a849363e5dd526b20f1d667abdece9e70de33910a4de3f82188fe2706232e81a

Observation a9997dbf-daf3-46c6-8128-15d1cd53a218 · outbound

This paper cites A., Mell, J.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN A., Mell, J

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.267613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.158773Z digest=sha256:89715bfc060baa7e0d68337f76df0ee8e3a9db07e2c6a569b74480cbc27dc7aa

Observation a4e255af-7b61-46c4-88c0-16d34a61e084 · outbound

This paper cites and Thompson, G.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN and Thompson, G

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.259877Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.161336Z digest=sha256:cf5d464995581469b004e85d4ba3f83523c6a177df08fc562dedc92894433d8d

Observation 12e6b7ba-660e-4f72-89f6-fa3eb89ccfee · outbound

This paper cites Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Reference 18

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.163769Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.163769Z digest=sha256:982da03783f91806272ef14b1f0d6ba04914248d3a89e9766f16f88cfc7a6fa2

Observation 70ff1bf9-9fde-4533-bf45-96ffa0418055 · outbound

This paper cites Nearest neighbor search on embeddings rapidly identifies distant protein relations.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Nearest neighbor search on embeddings rapidly identifies distant protein relations

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.252023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.166478Z digest=sha256:9fbd74d33a57c4778da84ddfa2c8e256bda040b373f72fdc95362226d8830466

Observation dc1a8947-80f3-4757-b5d3-a26bac0a4620 · outbound

This paper cites and S \"o ding, J.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN and S \"o ding, J

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.243723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.168777Z digest=sha256:102484c38b4409cacf2c6f0b39d17f46229e0356420b459be4832af8c0735ef1

Observation 5fced642-788f-4a2e-88d9-b75b6ff9b63d · outbound

This paper cites ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity

Reference 21

Resolution
verified exact
doi, observed 2026-08-06T15:05:25.205054Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.171525Z digest=sha256:cc75b7665e8a097f037835b12810875c3767e11deb9cef562f2b9c4036cf5fc4

Observation 87f1a1fa-8da8-420e-a98b-113e59289e03 · outbound

This paper cites Approximate Nearest Neighbor Negative Contrastive Learning for Dense Text Retrieval.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Approximate Nearest Neighbor Negative Contrastive Learning for Dense Text Retrieval

Reference 22

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.174089Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.174089Z digest=sha256:788f8b8164ba7cd123ccdd90332d91eee600afc81e7720ba376cb962727f102f

Observation 1b3ad77e-0132-4532-86e3-98db3743104e · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 23

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.176787Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.176787Z digest=sha256:04f64d968169530078996fb4b8bbc13ad29bb91e5371b1d86df292a59011f7b4

Pith citing papers

Observation 0bd12173-a570-44c4-a2b3-390e46404245 · inbound

Adaptive Multimodal Agents-Based Framework for Automatic Workflow Execution cites this paper.

Adaptive Multimodal Agents-Based Framework for Automatic Workflow Execution Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN

Reference 21

Resolution
verified exact
arxiv_id, observed 2026-06-29T11:53:24.204838Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-06-29T11:47:02.193326Z digest=sha256:f17b0ad4141f8d85639431916da927655906bcea4b56f5d3fb357ac174658c4b