Paper Citation Record · LEDGER

Co-optimization of codon usage and mRNA secondary structure using quantum computing

As of 19 August 2026, this Paper Citation Record lists 25 of 25 outbound references and 0 inbound Pith citation observations for arXiv:2507.18817.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.18817 v1

Coverage vector

measured 25 of 25 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T14:37:13.924037Z

measured 25 of 25 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

25 of 25 outbound references displayed

verified exact2
verified fuzzy21
unresolved0
parse uncertain0
malformed identifier2
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 61cbe418-4e73-42d6-94e5-e943577567cd · outbound

This paper cites Tailor made: the art of therapeutic mRNA design,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Tailor made: the art of therapeutic mRNA design,

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.664742Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation f9c01dcf-5c20-440f-a8d6-f84b2671a1cf · outbound

This paper cites 5 ′-utr g-quadruplex structures acting as translational repressors,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing 5 ′-utr g-quadruplex structures acting as translational repressors,

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.552308Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 1199227f-4492-415a-ac4a-69f49e93498e · outbound

This paper cites mrna structure regulates protein expression through changes in functional half- life,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing mrna structure regulates protein expression through changes in functional half- life,

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.489626Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation ff2f9b58-a609-4284-9727-b3450f28dfde · outbound

This paper cites Rna strand: the rna secondary structure and statistical analysis database,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Rna strand: the rna secondary structure and statistical analysis database,

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.471092Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3caeaa52-ae47-4ec1-92b5-deb88010ea84 · outbound

This paper cites Combinatorial optimization of mrna structure, stability, and translation for rna-based therapeutics,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Combinatorial optimization of mrna structure, stability, and translation for rna-based therapeutics,

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.456752Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 5f18ec8d-1963-4714-8844-ff597e498f19 · outbound

This paper cites Codonbert large language model for mrna vaccines,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Codonbert large language model for mrna vaccines,

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.409634Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 1220435c-ecab-4852-bf25-f53f1bc95912 · outbound

This paper cites mrnaid, an open- source platform for therapeutic mrna design and optimization strategies,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing mrnaid, an open- source platform for therapeutic mrna design and optimization strategies,

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.334497Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 8a2f03d9-90d2-47fc-ad22-2207ea1ca1b4 · outbound

This paper cites Theoretical basis for stabilizing messenger rna through secondary structure design,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Theoretical basis for stabilizing messenger rna through secondary structure design,

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.204754Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 2d110362-0cd6-4cf3-ae6b-ae2ae801d8b7 · outbound

This paper cites Algorithm for optimized mrna design improves stability and immunogenicity,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Algorithm for optimized mrna design improves stability and immunogenicity,

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.168974Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation bf06f027-c9b9-41b5-8051-acf949c00832 · outbound

This paper cites Derna enables pareto optimal rna design,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Derna enables pareto optimal rna design,

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.136201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3dc8ed9b-32e0-46ca-96db-ff368c92d2a2 · outbound

This paper cites mRNA Folding Algorithms for Structure and Codon Optimization.

Co-optimization of codon usage and mRNA secondary structure using quantum computing mRNA Folding Algorithms for Structure and Codon Optimization

Reference 11

Resolution: verified exact; local_arxiv, observed 2026-08-06T14:37:14.800588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 9bb4787e-0229-438b-aca4-0cdbde32e50b · outbound

This paper cites A resource-efficient variational quantum algorithm for mRNA codon optimization.

Co-optimization of codon usage and mRNA secondary structure using quantum computing A resource-efficient variational quantum algorithm for mRNA codon optimization

Reference 12

Resolution: verified exact; local_arxiv, observed 2026-08-06T14:37:14.365606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b9833573-4748-42ba-99b5-509ea0175818 · outbound

This paper cites Quantum-classical hybrid approach for codon optimization and its practical applications,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Quantum-classical hybrid approach for codon optimization and its practical applications,

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.127641Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 35213d30-42a7-4315-9cec-d01324eee484 · outbound

This paper cites The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications,

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:17.010869Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b38b5f10-62c7-4548-a344-1521cc5ef6da · outbound

This paper cites Estimation of secondary structure in ribonucleic acids,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Estimation of secondary structure in ribonucleic acids,

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:16.876152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation fe6b8606-17d0-4a38-9e42-d58a7ae497ed · outbound

This paper cites mRNA codon optimization with quantum computers,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing mRNA codon optimization with quantum computers,

Reference 16

Resolution: malformed identifier; no resolver link, observed 2026-08-06T14:37:13.773027Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 46ba3d0b-007a-46a1-a9cd-e54afc94dece · outbound

This paper cites Synonymous but not the same: the causes and consequences of codon bias,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Synonymous but not the same: the causes and consequences of codon bias,

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:16.722307Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b650e888-11b6-4e14-ba4f-b25f3869b83e · outbound

This paper cites Codon usage tabulated from the inter- national dna sequence databases: status for the year 2000,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Codon usage tabulated from the inter- national dna sequence databases: status for the year 2000,

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:16.584744Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 685a493d-a649-4e95-a841-cd6def552277 · outbound

This paper cites mrna secondary structure prediction using utility-scale quantum computers,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing mrna secondary structure prediction using utility-scale quantum computers,

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:16.480336Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 24cb2bfb-2a3f-467d-99a6-0730f61695d6 · outbound

This paper cites Gusfield, Integer Linear Programming in Computational and Systems Biology: An Entry-Level Text and Course.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Gusfield, Integer Linear Programming in Computational and Systems Biology: An Entry-Level Text and Course

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:16.175900Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 168dc593-dc36-4255-9a33-838f42ae8e16 · outbound

This paper cites License information.

Co-optimization of codon usage and mRNA secondary structure using quantum computing License information

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:15.914829Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 782af0d5-02d3-4a47-a730-4e419daab510 · outbound

This paper cites NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure,

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:15.696654Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation af165842-e119-4c45-b2e5-a13eb9a86465 · outbound

This paper cites A simplex method for function minimiza- tion,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing A simplex method for function minimiza- tion,

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:15.354747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 5e0dc4cb-554b-40ad-8ce6-0c608ec99dcc · outbound

This paper cites Improving variational quantum optimization using cvar,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Improving variational quantum optimization using cvar,

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T14:37:15.057685Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 08689923-195c-4caa-bc3a-4e14c76afb41 · outbound

This paper cites Viennarna package 2.0,.

Co-optimization of codon usage and mRNA secondary structure using quantum computing Viennarna package 2.0,

Reference 25

Resolution: malformed identifier; no resolver link, observed 2026-08-06T14:37:13.924037Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.