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Paper Citation Record · LEDGER

Hyperbolic Genome Embeddings

As of 14 August 2026, this Paper Citation Record lists 78 of 78 outbound references and 0 inbound Pith citation observations for arXiv:2507.21648.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.21648 v1

Coverage vector

measured 78 of 78 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T12:38:18.609604Z

measured 78 of 78 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

78 of 78 outbound references displayed

  • verified exact9
  • verified fuzzy55
  • unresolved13
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch1

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 797961ba-a6a0-46f6-b422-1f742393e7f1 · outbound

This paper cites Topological implications of negative curvature for biological and social networks.

Hyperbolic Genome Embeddings Topological implications of negative curvature for biological and social networks

Reference 1

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation b2218b59-7c0a-4b98-be13-9e07616ab6f6 · outbound

This paper cites Effective gene expression prediction from sequence by integrating long-range interactions.

Hyperbolic Genome Embeddings Effective gene expression prediction from sequence by integrating long-range interactions

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:12.739342Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:12.739342Z digest=sha256:c6fb0829d299bc933f51b2425c2b5a61fae17ac4e111b85667cf6c1f0c507509

Observation 2f120d87-eb2f-4196-a8ea-8f5fdaf0314d · outbound

This paper cites Fully hyperbolic convolutional neural networks for computer vision.

Hyperbolic Genome Embeddings Fully hyperbolic convolutional neural networks for computer vision

Reference 3

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation b0cbb2fa-0401-413d-ab76-113adf85ac6c · outbound

This paper cites Riemannian adaptive optimization methods.

Hyperbolic Genome Embeddings Riemannian adaptive optimization methods

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 359a4884-5e3c-4151-ab6f-780ce57770b3 · outbound

This paper cites Hyperbolicity measures democracy in real-world networks.

Hyperbolic Genome Embeddings Hyperbolicity measures democracy in real-world networks

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:30.690754Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:12.954568Z digest=sha256:5b0abef96567cf69b06a5d9b64cad6f9ba8962566eb9110be092cfa3291921e5

Observation cbf77573-833e-42f2-a36d-00c3af35dc8a · outbound

This paper cites Transposable elements and the evolution of eukaryotic complexity.

Hyperbolic Genome Embeddings Transposable elements and the evolution of eukaryotic complexity

Reference 6

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation d7256392-d0b1-4ee0-9885-d56856978507 · outbound

This paper cites High-coverage whole-genome sequencing of the expanded 1000 genomes project cohort including 602 trios.

Hyperbolic Genome Embeddings High-coverage whole-genome sequencing of the expanded 1000 genomes project cohort including 602 trios

Reference 7

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 455b620e-ed53-4bfd-85e4-ccd99c2a69b8 · outbound

This paper cites Neural Embeddings of Graphs in Hyperbolic Space.

Hyperbolic Genome Embeddings Neural Embeddings of Graphs in Hyperbolic Space

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:13.108907Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:13.108907Z digest=sha256:5ae9369cabc68ebfaee3a5ec91f171a90388dd831a79966b335750a4e27f4722

Observation 89858e4f-41b3-446f-886b-5ab61328b4d0 · outbound

This paper cites Hyperbolic graph convolutional neural networks.

Hyperbolic Genome Embeddings Hyperbolic graph convolutional neural networks

Reference 9

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 64dc33f6-93ca-4f72-8e59-1de889d37860 · outbound

This paper cites From trees to continuous embeddings and back: Hyperbolic hierarchical clustering.

Hyperbolic Genome Embeddings From trees to continuous embeddings and back: Hyperbolic hierarchical clustering

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:29.599190Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 4bce31a2-1f21-462a-96eb-c1278ff1a77e · outbound

This paper cites Low-dimensional hyperbolic knowledge graph embeddings.

Hyperbolic Genome Embeddings Low-dimensional hyperbolic knowledge graph embeddings

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:13.312557Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 2d26fca2-0628-40d9-8d3e-c269be32ee4a · outbound

This paper cites Average gromov hyperbolicity and the parisi ansatz.

Hyperbolic Genome Embeddings Average gromov hyperbolicity and the parisi ansatz

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:29.313426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation b6b32e31-aebf-46b0-9d8c-d30133059b65 · outbound

This paper cites Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space.

Hyperbolic Genome Embeddings Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space

Reference 13

Resolution
metadata mismatch
local_arxiv, observed 2026-08-06T12:38:20.404034Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation e8d08291-7558-4d2f-9c0e-5d233ecb739e · outbound

This paper cites A sequence-based global map of regulatory activity for deciphering human genetics.

Hyperbolic Genome Embeddings A sequence-based global map of regulatory activity for deciphering human genetics

Reference 14

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 4febe448-29ad-48bc-98c7-a0114526e3ed · outbound

This paper cites Fully hyperbolic neural networks.

Hyperbolic Genome Embeddings Fully hyperbolic neural networks

Reference 15

Resolution
verified exact
doi, observed 2026-08-06T12:38:19.889098Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 91e422c3-6202-42ff-b2ba-b9744570632e · outbound

This paper cites Hyperbolic pre-trained language model.

Hyperbolic Genome Embeddings Hyperbolic pre-trained language model

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:28.772629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 933aeaf6-ca80-43de-8b3f-b44a94c4b042 · outbound

This paper cites Fast hyperboloid decision tree algorithms.

Hyperbolic Genome Embeddings Fast hyperboloid decision tree algorithms

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:28.555321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 0e99e6d4-ebdf-4df3-8ccd-f13e9c33f3c0 · outbound

This paper cites Manify: A Python Library for Learning Non-Euclidean Representations.

Hyperbolic Genome Embeddings Manify: A Python Library for Learning Non-Euclidean Representations

Reference 18

Resolution
verified exact
local_arxiv, observed 2026-08-06T12:38:20.339972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation b177264a-6683-41cb-a906-83f770e8eb5d · outbound

This paper cites On computing the gromov hyperbolicity.

Hyperbolic Genome Embeddings On computing the gromov hyperbolicity

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:28.288106Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 32f57cad-fe3a-4745-8233-3730d398ef08 · outbound

This paper cites To Transformers and Beyond: Large Language Models for the Genome.

Hyperbolic Genome Embeddings To Transformers and Beyond: Large Language Models for the Genome

Reference 20

Resolution
verified exact
local_arxiv, observed 2026-08-06T12:38:20.160044Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 48330d5f-d91f-447a-a37a-90fae31088cb · outbound

This paper cites Distribution and intensity of constraint in mammalian genomic sequence.

Hyperbolic Genome Embeddings Distribution and intensity of constraint in mammalian genomic sequence

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:28.051061Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation b4e9782d-de65-4c3e-99bb-6b6ac0972793 · outbound

This paper cites Neural distance embeddings for biological sequences.

Hyperbolic Genome Embeddings Neural distance embeddings for biological sequences

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:27.948251Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 9568f5ef-1df7-484a-b14d-a1adf84725e9 · outbound

This paper cites Nucleotide transformer: building and evaluating robust foundation models for human genomics.

Hyperbolic Genome Embeddings Nucleotide transformer: building and evaluating robust foundation models for human genomics

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:27.816038Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 16b0ff53-0e15-410b-bf88-9ae31972e85c · outbound

This paper cites Epd and epdnew, high-quality promoter resources in the next-generation sequencing era.

Hyperbolic Genome Embeddings Epd and epdnew, high-quality promoter resources in the next-generation sequencing era

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:27.612181Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 4445e2e0-1ca8-4ce4-9776-cb435cd214cb · outbound

This paper cites Roles of transposable elements in the different layers of gene expression regulation.

Hyperbolic Genome Embeddings Roles of transposable elements in the different layers of gene expression regulation

Reference 25

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 3927e25a-9c11-4ffd-9a0b-ad76df6dbc18 · outbound

This paper cites Sequence basis of transcription initiation in the human genome.

Hyperbolic Genome Embeddings Sequence basis of transcription initiation in the human genome

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:27.177616Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation a288bc39-ddfe-4dba-9f52-61f7a80f3ce1 · outbound

This paper cites The regulated retrotransposon transcriptome of mammalian cells.

Hyperbolic Genome Embeddings The regulated retrotransposon transcriptome of mammalian cells

Reference 27

Resolution
verified exact
doi, observed 2026-08-06T12:38:19.671796Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 622b0d48-9350-42e6-9d07-85cf0902cdf1 · outbound

This paper cites Computing the gromov hyperbolicity of a discrete metric space.

Hyperbolic Genome Embeddings Computing the gromov hyperbolicity of a discrete metric space

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:27.006013Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation e1a51336-620f-4e9a-bb52-87109a6e1448 · outbound

This paper cites Gencode reference annotation for the human and mouse genomes.

Hyperbolic Genome Embeddings Gencode reference annotation for the human and mouse genomes

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:26.712191Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 088a4e16-04f9-43db-946d-96938b6aece1 · outbound

This paper cites Hyperbolic neural networks.

Hyperbolic Genome Embeddings Hyperbolic neural networks

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:26.515507Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 47f3bfae-29ed-4a61-860e-706ffb411862 · outbound

This paper cites Genomic benchmarks: a collection of datasets for genomic sequence classification.

Hyperbolic Genome Embeddings Genomic benchmarks: a collection of datasets for genomic sequence classification

Reference 31

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:14.688955Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 3d87789e-e242-44ae-b063-93b956d1ede9 · outbound

This paper cites Hyperbolic groups.

Hyperbolic Genome Embeddings Hyperbolic groups

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:26.251036Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation 24774830-4c76-4a4e-8dda-b65909fa0c11 · outbound

This paper cites Mamba: Linear-time sequence modeling with selective state spaces.

Hyperbolic Genome Embeddings Mamba: Linear-time sequence modeling with selective state spaces

Reference 33

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:14.815661Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:14.815661Z digest=sha256:9879f71ba96578b952da55f18a7676d92d506287c569bda505471d3ac4036b97

Observation dbe06672-fd8d-48e8-abf5-f452c13f72d9 · outbound

This paper cites Hyperbolic Attention Networks.

Hyperbolic Genome Embeddings Hyperbolic Attention Networks

Reference 34

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:14.894908Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:14.894908Z digest=sha256:3415fe67bff7e010fe8d8ad81e2f01e5277e1b2290583c306dc79b6c19f5f63b

Observation 80f37e57-7756-4e24-86e1-9af53e2934d8 · outbound

This paper cites Exploring network structure, dynamics, and function using networkx.

Hyperbolic Genome Embeddings Exploring network structure, dynamics, and function using networkx

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:14.971596Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:14.971596Z digest=sha256:96caa41772e035c2fc890e6902870b5b9c4bfe44b3a5c7338d2ef4b90e73fb82

Observation 31f3a25b-fd67-477b-90f0-20c5f5a326e3 · outbound

This paper cites Mobilization of transposable elements by environmental and endogenous factors.

Hyperbolic Genome Embeddings Mobilization of transposable elements by environmental and endogenous factors

Reference 36

Resolution
verified exact
doi, observed 2026-08-06T12:38:19.467817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation c249f344-cc2f-4bfd-856e-0cbecff9f613 · outbound

This paper cites Transposable elements.

Hyperbolic Genome Embeddings Transposable elements

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:25.958012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.096056Z digest=sha256:93427378a3867b828e4a050be65c4160ef38a2b0cf948d6d1bec80753d24968c

Observation 2e2da574-446b-4d25-9112-008900d390e8 · outbound

This paper cites Capturing implicit hierarchical structure in 3d biomedical images with self-supervised hyperbolic representations.

Hyperbolic Genome Embeddings Capturing implicit hierarchical structure in 3d biomedical images with self-supervised hyperbolic representations

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:25.786457Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.132891Z digest=sha256:8b877ee0de91afef88288d4fa8d3667937cbd7ce508e30a8f1c7457d9d3dc086

Observation 946d3736-d40b-4bfc-a57b-8aa1bf1fff1a · outbound

This paper cites Ete 3: reconstruction, analysis, and visualization of phylogenomic data.

Hyperbolic Genome Embeddings Ete 3: reconstruction, analysis, and visualization of phylogenomic data

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:25.485635Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.204068Z digest=sha256:902cea28d9b00d05400ee1418173ba7094f35fe410b0442d9aad2f4c039b0666

Observation 90e19b91-481c-493c-b776-a3d87efdbc1e · outbound

This paper cites Visualising very large phylogenetic trees in three dimensional hyperbolic space.

Hyperbolic Genome Embeddings Visualising very large phylogenetic trees in three dimensional hyperbolic space

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:25.309662Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.285163Z digest=sha256:2e88f6fac23c9f14fcbe106ef17f5446ea51e84eb078362484faf790680cbfdd

Observation a4ddc3f6-2b5b-44d7-a226-73460937b0e0 · outbound

This paper cites Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome.

Hyperbolic Genome Embeddings Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.989050Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.377812Z digest=sha256:06da03a887c589e0cef6da03342d98b1bdff5732a38ac69d271b3bedfe79e053

Observation e390fa0d-7ad1-42b7-b7e3-cbbd267bcec1 · outbound

This paper cites Learning hyperbolic embedding for phylogenetic tree placement and updates.

Hyperbolic Genome Embeddings Learning hyperbolic embedding for phylogenetic tree placement and updates

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.837458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.447591Z digest=sha256:35461d63bc8e36ec57748553708179f96aa7c830514d6b915746bb1a91869ae9

Observation 0d94b41e-93ef-4315-b882-3c32ebf2931a · outbound

This paper cites Phylogenetic placement problem: A hyperbolic embedding approach.

Hyperbolic Genome Embeddings Phylogenetic placement problem: A hyperbolic embedding approach

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.719600Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.513070Z digest=sha256:4530fc020bbeefc8b89586645ffc34d26f091412e13fc515aa9d7e468a914109

Observation 2cada4fa-4f46-4ebf-8520-c53dbf911684 · outbound

This paper cites Transposable elements: a common feature of neurodegenerative disorders.

Hyperbolic Genome Embeddings Transposable elements: a common feature of neurodegenerative disorders

Reference 44

Resolution
verified exact
doi, observed 2026-08-06T12:38:19.201642Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.591649Z digest=sha256:5350ee8aca507f7fcb6ab104f3a436c09ccb4d1cd13be0c870ce4ef371a53615

Observation ef844378-71b3-4785-a6d2-3780b5ded179 · outbound

This paper cites Hyperbolic image embeddings.

Hyperbolic Genome Embeddings Hyperbolic image embeddings

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.491976Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.666228Z digest=sha256:5e2f34b75528e5c5e0d76094fe6dc6f1d1c6cbbd91689bad66fd37d6f6ba89c3

Observation 93a1a124-ae01-48a4-b81d-efbf9a2ae426 · outbound

This paper cites Controlling the fr \'e chet variance improves batch normalization on the symmetric positive definite manifold.

Hyperbolic Genome Embeddings Controlling the fr \'e chet variance improves batch normalization on the symmetric positive definite manifold

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.321510Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.677314Z digest=sha256:d22b81a4eb14679f7152edad4365b524bfc7bac1622b34489dfbb78459412ced

Observation bc653fb7-7769-426a-b723-db9b21549f39 · outbound

This paper cites Hyperplane margin classifiers on the multinomial manifold.

Hyperbolic Genome Embeddings Hyperplane margin classifiers on the multinomial manifold

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.205823Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.746025Z digest=sha256:bf2b1f6bdfd00fbf0d57ca78625c4c378a9d66794ffb1a2a294a56d1010c91dd

Observation 9deee9d2-dc1f-4141-bf98-1f956bac8521 · outbound

This paper cites Hyperbolic visual embedding learning for zero-shot recognition.

Hyperbolic Genome Embeddings Hyperbolic visual embedding learning for zero-shot recognition

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:24.005719Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.808503Z digest=sha256:83857a05f975d214552f60a6e51dc8b7e759e058029aa45aa238cc5e3c3dde51

Observation d593f6b6-a9d5-4514-9e29-926e4a3e67bd · outbound

This paper cites Decoupled weight decay regularization.

Hyperbolic Genome Embeddings Decoupled weight decay regularization

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:15.843081Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:15.843081Z digest=sha256:2eacf7ac70350ee28737d99e2973a03bbc1aa4864e3ad70fbf42ebd498808032

Observation 4c3733cc-3105-4467-a26a-bb2c2a4eac23 · outbound

This paper cites Differentiating through the fr \'e chet mean.

Hyperbolic Genome Embeddings Differentiating through the fr \'e chet mean

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:23.787975Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:15.938281Z digest=sha256:033c12f9296cf0e5d32bd023a1d2f0b2b66d54b4a5ec55217fca4f3016a03efd

Observation 5929a015-9ed9-47aa-855a-9937d3f7936f · outbound

This paper cites Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning.

Hyperbolic Genome Embeddings Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning

Reference 51

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:16.007526Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:16.007526Z digest=sha256:a083bc237b78f943c21778ddca68aea139269a5b121ef932e4d4e12bee19b9cf

Observation ef709b4c-e9b3-4aaa-a85d-0a363573e4e3 · outbound

This paper cites Plantrep: a database of plant repetitive elements.

Hyperbolic Genome Embeddings Plantrep: a database of plant repetitive elements

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:23.618880Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.075934Z digest=sha256:6a003539895e77324032acc7fce3abc34586bb9d920ded5164c855983477dbc4

Observation 6a414dd8-8cd6-4611-81bf-0b71d06ef17f · outbound

This paper cites Continuous hierarchical representations with poincar \'e variational auto-encoders.

Hyperbolic Genome Embeddings Continuous hierarchical representations with poincar \'e variational auto-encoders

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:23.475483Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.134611Z digest=sha256:50b3650d89c94d97ceab0d7156932204cde8716989879e2802ca3ec9d3026504

Observation 321770ed-929b-4ef2-89e5-aa51a363d4c9 · outbound

This paper cites A wrapped normal distribution on hyperbolic space for gradient-based learning.

Hyperbolic Genome Embeddings A wrapped normal distribution on hyperbolic space for gradient-based learning

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:23.241428Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.167805Z digest=sha256:b318032dc171769ab4154f57fb16cd46846894d3c5b1003d42ed41b1a1a3e35d

Observation ded6f3b4-a8de-464c-9ef4-fb2358f04b5a · outbound

This paper cites Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.

Hyperbolic Genome Embeddings Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.996304Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.253641Z digest=sha256:76c172ebe0690c18b581edc193e71e9eaed4566d581533faf64b73b588c7307e

Observation 169c815d-98c6-4b1e-a764-c2137dd1e6d6 · outbound

This paper cites Learning continuous hierarchies in the lorentz model of hyperbolic geometry.

Hyperbolic Genome Embeddings Learning continuous hierarchies in the lorentz model of hyperbolic geometry

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.802517Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.328409Z digest=sha256:b604b6a10a673d8ea3aa12244b487723c24f72db1200e30a42de28871a0e1268

Observation 68fad738-52a2-4bc2-a7f9-c8cc0b2caf2e · outbound

This paper cites Hyena hierarchy: Towards larger convolutional language models.

Hyperbolic Genome Embeddings Hyena hierarchy: Towards larger convolutional language models

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.607352Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.413499Z digest=sha256:c1d9473c440a1bbfaae7112f40a294ce34845d97a42f38f488d98c826e937700

Observation da37a1d0-a595-4546-9751-f87fccada0e3 · outbound

This paper cites Autoencoding Hyperbolic Representation for Adversarial Generation.

Hyperbolic Genome Embeddings Autoencoding Hyperbolic Representation for Adversarial Generation

Reference 58

Resolution
verified exact
local_arxiv, observed 2026-08-06T12:38:20.040946Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.509785Z digest=sha256:a00ae94be2911688b2494c106a5b73ca7aa1f11c879c857e6142344483c11fb0

Observation 167e180a-e0a5-47ad-84f2-a95ee7793354 · outbound

This paper cites Caduceus: Bi-directional equivariant long-range DNA sequence modeling.

Hyperbolic Genome Embeddings Caduceus: Bi-directional equivariant long-range DNA sequence modeling

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.439515Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.592120Z digest=sha256:b34e6d53b1cf7d3270d70e48d9b48b8e544cf7bb40fd00c570125b9bcf02fc07

Observation 7ef7fb53-838b-4c89-96c0-2c0f4f38bc26 · outbound

This paper cites The impact of transposable elements in adaptive evolution.

Hyperbolic Genome Embeddings The impact of transposable elements in adaptive evolution

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.271630Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.690897Z digest=sha256:27e731cb6ce8d4c17bd6ff6fa08bd695af526965d484a6842716e4fb2bfaad62

Observation 9ad91ac2-b445-40b9-9360-cea5b32dedea · outbound

This paper cites Widespread establishment and regulatory impact of alu exons in human genes.

Hyperbolic Genome Embeddings Widespread establishment and regulatory impact of alu exons in human genes

Reference 61

Resolution
verified exact
doi, observed 2026-08-06T12:38:19.048797Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.781487Z digest=sha256:e531f89376cee4470abeb6599e80162a43b7b0f576246be119f8fc5999dfaab6

Observation 2ea43869-a54b-4f76-85ce-7c8f9564bcdc · outbound

This paper cites Mixed-curvature variational autoencoders.

Hyperbolic Genome Embeddings Mixed-curvature variational autoencoders

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:22.134749Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.842901Z digest=sha256:0b43c350adbe8f70c419cadaf255aaabb2e52c56c95c546436b0021b715c444c

Observation 542dbdc7-464b-45b4-9126-4954fa900b4f · outbound

This paper cites Pyvolve: a flexible python module for simulating sequences along phylogenies.

Hyperbolic Genome Embeddings Pyvolve: a flexible python module for simulating sequences along phylogenies

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.979259Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:16.942232Z digest=sha256:20112b1f034018197e9ac8d42af9a3d5f41504074544e26cbf6de81a72b04a6f

Observation a4d3c201-2c9e-4b83-ae6b-f8c95f199107 · outbound

This paper cites Widespread contribution of transposable elements to the innovation of gene regulatory networks.

Hyperbolic Genome Embeddings Widespread contribution of transposable elements to the innovation of gene regulatory networks

Reference 64

Resolution
verified exact
doi, observed 2026-08-06T12:38:18.837381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.033794Z digest=sha256:51cfab3477003945f9be07220f3c4bc1fc152ed98ac48d2c265823d489640c42

Observation 8cafcf63-3c71-42ac-aacc-5951382dbebc · outbound

This paper cites Line-of-descent and genealogical processes, and their applications in population genetics models.

Hyperbolic Genome Embeddings Line-of-descent and genealogical processes, and their applications in population genetics models

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.804875Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.152029Z digest=sha256:34792946403c9e7e949216c49850336bc73cc96a1c0d3c9d4b3502d71cea707c

Observation 05cfde42-a0fd-4596-8232-76fb37c7b5e7 · outbound

This paper cites Graphpart: homology partitioning for biological sequence analysis.

Hyperbolic Genome Embeddings Graphpart: homology partitioning for biological sequence analysis

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.632614Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.280997Z digest=sha256:e9398ad239d7b3d14094492d7463e39e950dd7a6b5fe4f53393b00294e7c5a98

Observation 0cf162f5-b2f5-4391-8f92-cb1624dbfe7c · outbound

This paper cites Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning.

Hyperbolic Genome Embeddings Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.468137Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.399496Z digest=sha256:821e9cc76debf4ee8a569036072560dee649afcba32f11de7d79182c3d81d24d

Observation fc90ef45-408f-4b72-95ce-069de81612af · outbound

This paper cites Poincare glove: Hyperbolic word embeddings.

Hyperbolic Genome Embeddings Poincare glove: Hyperbolic word embeddings

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.313509Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.500712Z digest=sha256:148f89bbe61cf12ab6226a1e2eba60c662dc4946af8c360a2f70527cf5686e97

Observation 24536365-36fd-47ed-8ac7-efa54994fa58 · outbound

This paper cites A field guide to eukaryotic transposable elements.

Hyperbolic Genome Embeddings A field guide to eukaryotic transposable elements

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.177431Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.608943Z digest=sha256:88253abbea205acd70dfe485d27839a2f5d5b61c6962c11d58dcf117b81915f0

Observation fc02431e-d6e2-4eea-ab79-611eaeeb51a2 · outbound

This paper cites Enhancing llm complex reasoning capability through hyperbolic geometry.

Hyperbolic Genome Embeddings Enhancing llm complex reasoning capability through hyperbolic geometry

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:21.051162Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.712368Z digest=sha256:a30722c24a1465c1057e30493e3c511197a7b55dff85ddf3db3b2eca71cdcea0

Observation db034853-a4f1-4b74-b595-e2dca05c1f8d · outbound

This paper cites Deep learning for genomics: From early neural nets to modern large language models.

Hyperbolic Genome Embeddings Deep learning for genomics: From early neural nets to modern large language models

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:20.890129Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.796805Z digest=sha256:c7430feec7080be2184ade323044595d375c6e302b07efc86397437226c37407

Observation f1a1f433-f50e-4aed-9820-d1962585ccd0 · outbound

This paper cites Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale.

Hyperbolic Genome Embeddings Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale

Reference 72

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:20.739588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:17.910887Z digest=sha256:a1bfd9646ee607e82d777cfbce72c2b6dc1e6327fe7b8c4c5b158fd567e4ebd4

Observation 73ddcc0c-cbde-48f7-8db0-57274b340fd5 · outbound

This paper cites Hyperbolic geometry of gene expression.

Hyperbolic Genome Embeddings Hyperbolic geometry of gene expression

Reference 73

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:20.619116Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:18.049967Z digest=sha256:5313d09885f9aa4d5e272e1156990cb71902856c881587c630f840fbfcdb7578

Observation 0a6f1b5a-c931-418f-bc5e-e5bf1e4d9f86 · outbound

This paper cites Davuluri, and Han Liu.

Hyperbolic Genome Embeddings Davuluri, and Han Liu

Reference 74

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T12:38:20.522993Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=arxiv_source observed=2026-08-06T12:38:18.164876Z digest=sha256:0626d9456963b4790d2919e53c1037aa72b618bba22dd288bb22f4a0e1d054de

Observation 07e173dc-5236-48aa-8929-e199bf639fc3 · outbound

This paper cites write newline.

Hyperbolic Genome Embeddings write newline

Reference 75

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:18.267570Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:18.267570Z digest=sha256:a509fefd01d7644f6b6fd4248046e7eb849609cae19d3c8b8a06490f22c9c5e9

Observation f15edbc1-dbf6-4f04-bce6-2ad3e95f3d98 · outbound

This paper cites @esa (Ref.

Hyperbolic Genome Embeddings @esa (Ref

Reference 76

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:18.383187Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:18.383187Z digest=sha256:de041e3040383cb609032e1fc0b74dfff72eb1eca8547bf88ba9ed9ebb00bf02

Observation 21f8f386-36e9-4135-865c-36081b12aeff · outbound

This paper cites an unresolved cited work.

Hyperbolic Genome Embeddings Unresolved cited work

Reference 77

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:18.494262Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:18.494262Z digest=sha256:2703229d7638b86a9f88373820d23b6a00a02f7b93c5d927c8c7d77f4eccf6f9

Observation 233b39fd-a10c-421d-a450-339537e9aed2 · outbound

This paper cites an unresolved cited work.

Hyperbolic Genome Embeddings Unresolved cited work

Reference 78

Resolution
unresolved
no resolver link, observed 2026-08-06T12:38:18.609604Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T12:38:18.609604Z digest=sha256:866ed89bc1e4bf60ec178d87e1d54f3f3907bba0bfa48fa95303703c78b17870

Pith citing papers

No inbound Pith citation observations are available.