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Paper Citation Record · LEDGER

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics

As of 11 August 2026, this Paper Citation Record lists 63 of 63 outbound references and 0 inbound Pith citation observations for arXiv:2508.01490.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.01490 v2

Coverage vector

measured 63 of 63 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T05:36:44.790811Z

measured 63 of 63 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-11T06:34:44.6726+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

63 of 63 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8883c63d-1436-4d51-9777-bb4bb21f1e04 · outbound

This paper cites write newline.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics write newline

Reference 1

Resolution
unresolved
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.268902Z digest=sha256:cea2364145e3ff1e8451070e39fe202dd9f22ae69637affef16c60be476d1593

Observation c86df5f1-d321-407a-9289-99bc26212aaf · outbound

This paper cites Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025

Reference 2

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Source-reported events for the cited work

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Observation f08e93f5-00cd-4a3c-adee-1f5fe71454a9 · outbound

This paper cites Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F

Reference 3

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

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Observation 835cadb6-501c-44ed-95b4-6ef2dc510b89 · outbound

This paper cites Super-resolved spatial transcriptomics by deep data fusion.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Super-resolved spatial transcriptomics by deep data fusion

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.293924Z digest=sha256:ec05d60707a24f4e10158237325d4d5496325364f072bcf45d93cae45a3ee19f

Observation 373eb5d3-e885-4b0d-8063-02e80f9fecc1 · outbound

This paper cites Schoenfeld, and Chad Vanderbilt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Schoenfeld, and Chad Vanderbilt

Reference 5

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verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.300518Z digest=sha256:9a162e72b2c8ce26d001b679cc2a0440b50d4a153e556e31b3ab486fc9c6a5b6

Observation 98361def-b61c-4c8a-aa5f-ebba7d774d03 · outbound

This paper cites Emerging properties in self-supervised vision transformers.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Emerging properties in self-supervised vision transformers

Reference 6

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.307997Z digest=sha256:35801875aaaeeabb4abbefd36980ee5103d524d8fa5d4b0f91e37fb6eb8feceb

Observation ade58408-0ca1-4569-9099-863d70eecb08 · outbound

This paper cites Towards a general-purpose foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Towards a general-purpose foundation model for computational pathology

Reference 7

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.316146Z digest=sha256:3d99cd664061b72883fd7e942c089b004176bb48064165dad63bbb69c06496a5

Observation c6118fe4-b249-41f6-8859-89ca07ba3782 · outbound

This paper cites Tran, Yiwei Xiao, Shengyu Li, Vrutant V.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Tran, Yiwei Xiao, Shengyu Li, Vrutant V

Reference 8

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.325786Z digest=sha256:b9cebb5c5a92b1b7441298d232dd3f061b9dd1bbbd4c3f7551f718a358bab816

Observation dab9ed30-2d17-4ba1-970b-171eaa559d2d · outbound

This paper cites scgpt: toward building a foundation model for single-cell multi-omics using generative ai.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt: toward building a foundation model for single-cell multi-omics using generative ai

Reference 9

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.335024Z digest=sha256:ce191a9c254ea1eb9847b8f911447c2757bed7f683165bc31a741c8b404b9b8e

Observation 355e35e8-06de-4abf-b8ff-9ad2993ac5fe · outbound

This paper cites Contrastive vision-language pre-training with limited resources.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Contrastive vision-language pre-training with limited resources

Reference 10

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.341185Z digest=sha256:9e534c2f7fab73c84a4d2de01f7cfb59a5391768f7034a175f78eb6cccebb106

Observation c1c06886-3e69-4fd1-b56a-1017a27e0519 · outbound

This paper cites Geneformer: Learned gene compression using transformer-based context modeling.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Geneformer: Learned gene compression using transformer-based context modeling

Reference 11

Resolution
verified fuzzy
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.349639Z digest=sha256:d8662ff3a65dc70eacf214cfb3d6d0194b93fa93d5ff666535e99219fb497b2a

Observation 79fcc4d1-e299-4878-90e4-c7aff154a3b4 · outbound

This paper cites Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S

Reference 12

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.355720Z digest=sha256:d03ec66f61695390ea5bcfc35633f51a3f79c1b85f78b3a6953858b71e63f382

Observation 76b49cbd-f726-4b1e-8943-dd22083913f5 · outbound

This paper cites Multimodal Whole Slide Foundation Model for Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Multimodal Whole Slide Foundation Model for Pathology

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.362947Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.362947Z digest=sha256:45447a82a7a07b2b37a97749b3a1136435ca43381ba0be78885674bd3e6c935f

Observation 4f86d1e8-aeb3-4353-bdb5-44934f51eb84 · outbound

This paper cites Distilling foundation models for robust and efficient models in digital pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Distilling foundation models for robust and efficient models in digital pathology, 2025

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.334732Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.376424Z digest=sha256:c9a6606545596e357e2409ab8c7d3628beee6d11392390dec012dd7b9b7d0d27

Observation 1d49d71f-d141-4545-a122-8807f4373c8e · outbound

This paper cites Large-scale foundation model on single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Large-scale foundation model on single-cell transcriptomics

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.307227Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.383956Z digest=sha256:b3f7effd7775b194070ec4e69e04339591bffc26c81d8821319119b171762e1a

Observation 82e52781-712a-42d7-a6e9-ed53ec66861d · outbound

This paper cites Integrating spatial gene expression and breast tumour morphology via deep learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Integrating spatial gene expression and breast tumour morphology via deep learning

Reference 16

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.392080Z digest=sha256:3fe872bc2b9c1fe975b1d63193a091158ff7c0393a5295a98d17a09a6431a4c1

Observation e1832eda-3308-4c7e-b08f-d624b393638a · outbound

This paper cites Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen

Reference 17

Resolution
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.406115Z digest=sha256:59d4c98a68880fd7b6affc6ba41aeab4281257062b31ae3b3c78357cad64c8ba

Observation 35ca6e0e-d330-4046-9ec5-4e4fb5ad11e0 · outbound

This paper cites Montine, and James Zou.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Montine, and James Zou

Reference 18

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.414232Z digest=sha256:75e6cdd51447dca7e2fd6deef544a905823a4d586e0892ed7a8c32487978666a

Observation 6bc787c9-8d10-48b0-9d38-2f843c64a592 · outbound

This paper cites Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C

Reference 19

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.418777Z digest=sha256:113492a3f44897f533c7b7b13229ab4b30c2f7ebb6dd173841c03c37dad0e4d0

Observation b0494301-10c0-4e8b-b18f-b8d90c3f6430 · outbound

This paper cites Quilt-1M: One Million Image-Text Pairs for Histopathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Quilt-1M: One Million Image-Text Pairs for Histopathology

Reference 20

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.423965Z digest=sha256:cd37da71c6da8b484d3f7fe4a8621770629e8ee2b23df3a0c0e7cff26a278d54

Observation e448e946-6b4b-4716-9adf-7958c6ff9052 · outbound

This paper cites Openclip, 2021.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Openclip, 2021

Reference 21

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.444965Z digest=sha256:0e9aebb03cf4551d1285835c790067e18ae37bcd25b2c159a1761d1e14a5aef4

Observation decec8b0-703c-4032-a157-fc491129b4cf · outbound

This paper cites Hest-1k: A dataset for spatial transcriptomics and histology image analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hest-1k: A dataset for spatial transcriptomics and histology image analysis

Reference 22

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

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Observation 948bd05c-89bc-4fe2-8146-dd5185a0e5da · outbound

This paper cites Chen, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Chen, Drew F

Reference 23

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.459344Z digest=sha256:dabef3cbe015fc939f3814cbbab4323e0419df73d0050fb415644433e094c9be

Observation 5bf60a15-eeb7-4fda-b5e9-3a9c67bde109 · outbound

This paper cites Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.117326Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.464088Z digest=sha256:d69161a7ee8156508411149cc16fb816287283fc3d9cf0ff52accfbff5941ca0

Observation fca72e1c-8069-4fcd-a1bb-57dec35e16e8 · outbound

This paper cites Song, Richard J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Richard J

Reference 25

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.470251Z digest=sha256:2fd01022a563f71b14659d8b82442dc8306c2ce25f940cda49d832a0eb7baa31

Observation 27d52d13-3c00-403a-8236-263b3f30f025 · outbound

This paper cites o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \

Reference 26

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.478074Z digest=sha256:b0d5c311ed93e3cd0a7cd3f830d46f5ac7be17ab5e24ea6eceaa7f65ddc6c8c9

Observation ed64d291-8637-4f6a-afc9-1bda7d485580 · outbound

This paper cites Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.038419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.482918Z digest=sha256:a9b82fa058d68a13693ff281d534a7dd0efa68370fadfd825464a3555c0e0be6

Observation a9b4dc2a-7b53-4e62-ac84-8ea830d3c296 · outbound

This paper cites An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.008843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.489460Z digest=sha256:2ff954b1caf0ef8013851d1d268f9ee4706663207242e85357da06bc0d459928

Observation 42bdd5a2-a38c-43a1-b58b-325d3dbc5e20 · outbound

This paper cites Deep generative modeling for single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Deep generative modeling for single-cell transcriptomics

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.971803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.504207Z digest=sha256:42728db48e3fe0d8a7cc8d96be5fc95ee41da67132a9b9e4d54d35480201049c

Observation 17dbd77b-341b-409f-897a-7202cedfb179 · outbound

This paper cites A visual-language foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A visual-language foundation model for computational pathology

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.945232Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.514318Z digest=sha256:638952e6b58bddceb4209246605864d5de42bcbc6f0b0b9ed7b20fd077901c41

Observation def5f0a1-a7b8-424d-9296-b4e7c67a5b91 · outbound

This paper cites A multimodal generative ai copilot for human pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A multimodal generative ai copilot for human pathology

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.925374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.522135Z digest=sha256:4761d71f6c7470142eab6a9af7ebebdbac7cba6d6b3b6a913f8d8828345cfadf

Observation 13379a2c-8a83-4280-9844-37a064ab5c08 · outbound

This paper cites Benchmarking atlas-level data integration in single-cell genomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking atlas-level data integration in single-cell genomics

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.906187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.529930Z digest=sha256:262001cd4ac5ee6f6ac3a631c63237947f3d87e8b38df20387befc6a9c7a0425

Observation 08b46de9-7ab7-43f4-904c-19cc95c78975 · outbound

This paper cites Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.880737Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.534338Z digest=sha256:e04d31b92c7b072a5eb486d7f9e46c5d89fe7a83cbd465655f5c6f8278855ebb

Observation afc72521-1ec8-4292-90ec-578300f3dbd9 · outbound

This paper cites Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.841908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.543086Z digest=sha256:08027c155e6eb8be11bef3fff571d1f1e6dc9131aaf15e94de6cbfbbd558f88e

Observation 8c381126-409f-44d2-be0e-224d4b673c19 · outbound

This paper cites Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.801937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.554062Z digest=sha256:1c822df77e2a2983f74e215ce0f5ce03134162de3d89ee47e3299c8131027c7e

Observation cfb05ed4-65ea-4923-8782-25c631603013 · outbound

This paper cites Unsupervised deep disentangled representation of single-cell omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Unsupervised deep disentangled representation of single-cell omics

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.782551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.568981Z digest=sha256:92fdcc771412c6f534d46b1c8c9c7662ebedb76ff72dd9800ec3ef5ee8f0bb2d

Observation f620debc-5cde-49d2-b13e-fad1b85a3446 · outbound

This paper cites DINOv2: Learning Robust Visual Features without Supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics DINOv2: Learning Robust Visual Features without Supervision

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.578753Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.578753Z digest=sha256:3be2f33f241871a88f37d6cc3993ac80109def46ca6b80e5fb925ba5236f8f7a

Observation 197a3e7c-3cdd-451a-bdcd-b51f2c593f3a · outbound

This paper cites Spatial components of molecular tissue biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatial components of molecular tissue biology

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.756419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.585048Z digest=sha256:1e899274cebbf68ffa3df4d8e8207cfc7fd1c7fee47b2987e3fa6e67ec647c4d

Observation 0420772a-fb2f-42d3-b55d-a5887fd0608a · outbound

This paper cites Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.712740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.598566Z digest=sha256:24ee4e893d9c32556226fffddd1a732b002ef1a1c670ff709cc732f2fdb596ff

Observation fa24f5de-68ba-4cd8-8faf-4ad39970c2ae · outbound

This paper cites Learning transferable visual models from natural language supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Learning transferable visual models from natural language supervision

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.691220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.606099Z digest=sha256:917d1582e3c8d5ff1b635dcbf474e58cb9ea86adb3d7e43e26ca6e5fd166dae8

Observation b1a43759-34a1-4230-a3c8-41e2cfc11e79 · outbound

This paper cites Exploring tissue architecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Exploring tissue architecture using spatial transcriptomics

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.654361Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.614182Z digest=sha256:254312d73cd54de1087f4324a1f64747957b99d5a36cd57a1824c1a392d3cc7a

Observation b1b41bd8-6c26-4a13-9b9f-36ee374d49a0 · outbound

This paper cites Universal cell embeddings: A foundation model for cell biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Universal cell embeddings: A foundation model for cell biology

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.621776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.622143Z digest=sha256:14b80cea17e8173ea69df7de678665ce66808b207088c76c4922dae1f806b930

Observation 6e3eda38-b1f6-4bee-aa16-191eeecd938c · outbound

This paper cites H-optimus-0, 2024.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics H-optimus-0, 2024

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.588421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.628196Z digest=sha256:551c7dc4ebfc4cb1171e25a5c4b976231f8c77fca878f328a88c0e134dc3a740

Observation 0c549adb-b4e4-4adf-a2f7-0012f673170d · outbound

This paper cites Nicheformer: a foundation model for single-cell and spatial omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nicheformer: a foundation model for single-cell and spatial omics

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.565290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.636405Z digest=sha256:2aefe58aa294ea14c2156c9b2110c5cb04dacc51d4360cfab0245175732e213c

Observation ceaf244e-8a0a-4113-9fb8-207cb641b399 · outbound

This paper cites A deep learning model to predict RNA -seq expression of tumours from whole slide images.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A deep learning model to predict RNA -seq expression of tumours from whole slide images

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.525544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.648396Z digest=sha256:af694ebc2ce80f5c3a159a16df8b608e1abe9c21a1c6d9fffe4d0b2f9f826a6d

Observation 46434532-6a60-4252-9133-f820db22e174 · outbound

This paper cites Kunz, Juan A.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Kunz, Juan A

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.499598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.654588Z digest=sha256:590ae89743554997aaac5c6350bf7c5da20c9e5ed764e9d54b4a1eb14ba52017

Observation b379101e-d767-473d-8722-9853f4236cf0 · outbound

This paper cites Generating highly accurate pathology reports from gigapixel whole slide images with histogpt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Generating highly accurate pathology reports from gigapixel whole slide images with histogpt

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.473111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.663364Z digest=sha256:178abd8549fd167d63c6a1941d3aeeef6756a1ba60fa40944e066ce0067a65b1

Observation 72a9f0c3-9235-426a-b903-bdce313c127e · outbound

This paper cites Molecular-driven Foundation Model for Oncologic Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Molecular-driven Foundation Model for Oncologic Pathology

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.672000Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.672000Z digest=sha256:ac83012ae1598df6ea51eb0364cc5803b6fd7db0774f650a3f59db65bb6b90e6

Observation 3aeb2f53-fc19-4df6-af9d-1085d4f69985 · outbound

This paper cites Williams, Nicholas M.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Williams, Nicholas M

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.442798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.680988Z digest=sha256:dda1b587edaba6c58063d7692b51ad99e1980b8d1e6d9dfdbcd4aa2e774850ee

Observation 62e78b30-8f09-48dc-8792-03cfa8ef02f4 · outbound

This paper cites A foundation model for clinical-grade computational pathology and rare cancers detection.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A foundation model for clinical-grade computational pathology and rare cancers detection

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.407465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.694231Z digest=sha256:f8e258380b724c1ca6633a82e1e47c22be067b8ee5ecaff1dfa473b5429fd745

Observation 73c735b4-5f0c-413e-ba06-d9b4c92e74e8 · outbound

This paper cites Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.388233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.708865Z digest=sha256:296bf528fad7840da214179c793dabc1febeb9bd85c60bbb8c90ca7467c0e6bb

Observation 67dba3d3-51f5-4aa6-868b-6ed71f963fcf · outbound

This paper cites scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.357598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.717324Z digest=sha256:468919261e447ff1f40d629dcb28523caf546cbddb5101b7981b3d6d4c0869fd

Observation 5aaee62b-90e1-4128-be23-1ca9226b9a1a · outbound

This paper cites Transformer-based unsupervised contrastive learning for histopathological image classification.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based unsupervised contrastive learning for histopathological image classification

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.331480Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.722255Z digest=sha256:8b56adcf196049fdd4bd1a98a0f404ad7da7ab85f4a7c59f7b3d29895a0ed5cc

Observation 51784aec-d918-4f1f-9dff-b541066a08f8 · outbound

This paper cites Retccl: Clustering-guided contrastive learning for whole-slide image retrieval.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Retccl: Clustering-guided contrastive learning for whole-slide image retrieval

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.299644Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.726993Z digest=sha256:25128efeee9142654ff9856c42ee082141ebbe812abeffef2cbf528441bc70ca

Observation 73493bd8-664e-4887-b5a9-7c9e27800012 · outbound

This paper cites The cancer genome atlas pan-cancer analysis project.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics The cancer genome atlas pan-cancer analysis project

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.265815Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.733017Z digest=sha256:25d520349efd6e892a15d7a337a5da72e0303f72cb567eb827fce09820c6d1f9

Observation 56ac51e5-c367-4fad-9247-1e3bd9ce3283 · outbound

This paper cites SCANPY : large-scale single-cell gene expression data analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics SCANPY : large-scale single-cell gene expression data analysis

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.224778Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.738522Z digest=sha256:a7795f89ed320e2eceeebb1861921ed8dac3600ca369d732a2e51037c10e2ce9

Observation 1af7e9ea-b883-4084-a3a0-293b03c59085 · outbound

This paper cites Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.203141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.744253Z digest=sha256:3300aa164e03c92817cb88d3eafa64d38a9e809da5e384a00d808ab0f3c9cf5d

Observation e119abec-4ad6-4f2a-90be-12ff760d85f6 · outbound

This paper cites Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.169549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.755846Z digest=sha256:09acd33de9b200d6aec563d1c8f51b5c6302439e78f8c40773f4bb10fc15c102

Observation 7b24b661-cf71-4e48-b559-7c652b4b7a10 · outbound

This paper cites A whole-slide foundation model for digital pathology from real-world data.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A whole-slide foundation model for digital pathology from real-world data

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.125753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.761720Z digest=sha256:f9e67b96eb2160db49950a5acd865c7907c20e89fae1a0c54667912d784da792

Observation 9b26c7d2-ff59-488c-b0bf-69492cb58693 · outbound

This paper cites Sigmoid loss for language image pre-training, 2023.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Sigmoid loss for language image pre-training, 2023

Reference 60

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.767357Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.767357Z digest=sha256:3c02a1507d532a9ae017d7a0d337a809d3b0536ea8f91ecc359cae1ababb2ceb

Observation c2bbf966-49f8-4b5f-aee3-ebd3d39e6b4e · outbound

This paper cites Accelerating data processing and benchmarking of ai models for pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Accelerating data processing and benchmarking of ai models for pathology, 2025

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.089791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.775234Z digest=sha256:64647a802b7cd82aa37e4524cd925bfe0269216563e177fca69dadf9b6a25e95

Observation 8a7e388f-ab7d-46aa-835a-ef8dbac8f23f · outbound

This paper cites Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.063340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.784657Z digest=sha256:996b9d6f1498a09e8073823accde36379097971c5df227f203a25298900c0165

Observation 3e47b16e-2e61-4b7d-afaf-3b0f9add296b · outbound

This paper cites Conrad, Emily J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Conrad, Emily J

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.028296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.790811Z digest=sha256:d628f8cdf5c78fb6ff00574bd5461e7e6f0ef90e2709a081f501551a33dfa50b

Pith citing papers

No inbound Pith citation observations are available.