Paper Citation Record · LEDGER

CAKL: Commutative algebra k-mer learning of genomics

As of 10 August 2026, this Paper Citation Record lists 36 of 36 outbound references and 2 inbound Pith citation observations for arXiv:2508.09406.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.09406 v1

Coverage vector

measured 36 of 36 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-05T21:11:53.288674Z

measured 38 of 38 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-02T01:43:10.447620Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T16:27:08.906241Z

Reference resolution

36 of 36 outbound references displayed

verified exact2
verified fuzzy25
unresolved9
parse uncertain0
malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation dd87eb63-5f6d-430d-b617-45bcd0416a27 · outbound

This paper cites Comparative genomics of the eukaryotes.

CAKL: Commutative algebra k-mer learning of genomics Comparative genomics of the eukaryotes

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:59.078081Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ae68f6a7-eb6c-4151-bdf8-eb7c0d8019ff · outbound

This paper cites VISTA: computational tools for comparative genomics.

CAKL: Commutative algebra k-mer learning of genomics VISTA: computational tools for comparative genomics

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:58.839716Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d91023c4-5ef6-421f-93cd-1a554e9f6f1a · outbound

This paper cites Phylogenetic analysis in molecular evolutionary genetics.

CAKL: Commutative algebra k-mer learning of genomics Phylogenetic analysis in molecular evolutionary genetics

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:58.690352Z

Source-reported events for the cited work

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Observation 2c7a5135-f0a0-4354-890e-89b7aaa37683 · outbound

This paper cites Bellgard, Takeshi Itoh, Hidemi Watanabe, Tadashi Imanishi, and Takashi Gojobori.

CAKL: Commutative algebra k-mer learning of genomics Bellgard, Takeshi Itoh, Hidemi Watanabe, Tadashi Imanishi, and Takashi Gojobori

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:58.434792Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9a25f1d8-cc25-4f51-8969-39a5997258ad · outbound

This paper cites Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes S¨ oding, and et al.

CAKL: Commutative algebra k-mer learning of genomics Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes S¨ oding, and et al

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:58.222711Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 24b502a2-6672-47e4-a6d6-03b2f4890e98 · outbound

This paper cites Standley.

CAKL: Commutative algebra k-mer learning of genomics Standley

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:57.951883Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d1b892d7-e41e-47cd-a824-90e657f949e2 · outbound

This paper cites an unresolved cited work.

CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-05T21:11:57.805760Z

Source-reported events for the cited work

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Observation 9935dd4b-b436-4d8d-a9d9-2e6e49b12049 · outbound

This paper cites Topological data analysis identifies emerging adaptive mutations in sars-cov-2.

CAKL: Commutative algebra k-mer learning of genomics Topological data analysis identifies emerging adaptive mutations in sars-cov-2

Reference 8

Resolution: verified exact; raw_fallback, observed 2026-08-05T21:11:53.684454Z

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Observation bb5fb97d-fa89-40b4-9960-dfff900c6929 · outbound

This paper cites Maranas, Peter K.

CAKL: Commutative algebra k-mer learning of genomics Maranas, Peter K

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:57.659512Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 24655d44-e3af-4c44-b2bd-eb8157dc300f · outbound

This paper cites Editorial: Alignment-free methods in computational biology.

CAKL: Commutative algebra k-mer learning of genomics Editorial: Alignment-free methods in computational biology

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:57.476127Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 00a7e132-c590-41c7-87d4-15843eb506fc · outbound

This paper cites Karlowski.

CAKL: Commutative algebra k-mer learning of genomics Karlowski

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:57.353315Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 08b66bf9-6c13-4d1f-84a0-df5791866552 · outbound

This paper cites Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis.

CAKL: Commutative algebra k-mer learning of genomics Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:57.259376Z

Source-reported events for the cited work

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Observation fe91a21a-fd75-48d2-bbe8-8e97adc64d9d · outbound

This paper cites an unresolved cited work.

CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 13

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Source-reported events for the cited work

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Observation 7bfba838-209c-49e1-8d45-d3335de799a7 · outbound

This paper cites Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie R¨ ohling, Jae Jin Choi, Michael S.

CAKL: Commutative algebra k-mer learning of genomics Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie R¨ ohling, Jae Jin Choi, Michael S

Reference 14

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Source-reported events for the cited work

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Observation aff341a5-0f45-4a84-8c69-2d0c1468b8fa · outbound

This paper cites Edwin Blaisdell.

CAKL: Commutative algebra k-mer learning of genomics Edwin Blaisdell

Reference 15

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This paper cites McIrvine.

CAKL: Commutative algebra k-mer learning of genomics McIrvine

Reference 16

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Observation a4041479-fe7c-4fdb-92bf-d687af31a4b7 · outbound

This paper cites Otu and Khalid Sayood.

CAKL: Commutative algebra k-mer learning of genomics Otu and Khalid Sayood

Reference 17

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Observation 10304e14-ed83-4ab1-bc19-289763906292 · outbound

This paper cites An Introduction to Kolmogorov Complexity and Its Applications , volume 3.

CAKL: Commutative algebra k-mer learning of genomics An Introduction to Kolmogorov Complexity and Its Applications , volume 3

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:56.324738Z

Source-reported events for the cited work

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Observation 2dafacd1-9631-4248-8d74-eb1dbbc13171 · outbound

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 19

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5d807059-1be8-40a0-8ebd-eed3a8d79c3e · outbound

This paper cites He, and Stephen S.-T.

CAKL: Commutative algebra k-mer learning of genomics He, and Stephen S.-T

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:55.977477Z

Source-reported events for the cited work

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Observation 5e777352-9ef1-4d6b-9422-41792e22d279 · outbound

This paper cites Joel Jeffrey.

CAKL: Commutative algebra k-mer learning of genomics Joel Jeffrey

Reference 21

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4ebc8bea-1068-4e38-9bf2-86be9a8b218c · outbound

This paper cites Milestones in graphical bioinformatics.

CAKL: Commutative algebra k-mer learning of genomics Milestones in graphical bioinformatics

Reference 22

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Observation 7c4a8c52-575c-4b88-a68e-59840b8c96f8 · outbound

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 23

Resolution: unresolved; raw_fallback, observed 2026-08-05T21:11:55.330664Z

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e0aa63ef-68b9-40f4-a0f2-e33b50a25db0 · outbound

This paper cites an unresolved cited work.

CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 24

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No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 08a2d47f-09d8-4d92-998e-d9f30c8b8e11 · outbound

This paper cites Alignment-free method for dna sequence clustering using fuzzy integral similarity.

CAKL: Commutative algebra k-mer learning of genomics Alignment-free method for dna sequence clustering using fuzzy integral similarity

Reference 25

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 77f9e5de-885e-45f6-899e-198402e24837 · outbound

This paper cites He, and Stephen S.-T.

CAKL: Commutative algebra k-mer learning of genomics He, and Stephen S.-T

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:54.864482Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4ffa70c0-33bf-432f-a85b-d6083c2a2d11 · outbound

This paper cites an unresolved cited work.

CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 27

Resolution: unresolved; raw_fallback, observed 2026-08-05T21:11:54.728005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b7f5ebc1-54ce-4848-b35f-faec4746e109 · outbound

This paper cites Sims, Se-Ran Jun, Guohong A.

CAKL: Commutative algebra k-mer learning of genomics Sims, Se-Ran Jun, Guohong A

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:54.541808Z

Source-reported events for the cited work

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Observation a396b586-6f31-4b69-8cf7-843c5ff4f877 · outbound

This paper cites Persistent stanley–reisner theory.

CAKL: Commutative algebra k-mer learning of genomics Persistent stanley–reisner theory

Reference 29

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Observation 1a314074-d258-45f6-8243-3f75e454df7f · outbound

This paper cites Revealing the Shape of Genome Space via K-mer Topology.

CAKL: Commutative algebra k-mer learning of genomics Revealing the Shape of Genome Space via K-mer Topology

Reference 30

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Source-reported events for the cited work

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Observation c6e7976f-9f59-48c0-a126-db2978805413 · outbound

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 31

Resolution: unresolved; raw_fallback, observed 2026-08-05T21:11:54.433375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e0c64683-9294-4fee-a190-78c3d77a5b0c · outbound

This paper cites Statistical measures of dna sequence dissim- ilarity under markov chain models of base composition.

CAKL: Commutative algebra k-mer learning of genomics Statistical measures of dna sequence dissim- ilarity under markov chain models of base composition

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:54.252845Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d9e3853e-b50e-4feb-a0d3-316fe024237e · outbound

This paper cites The biological and clinical significance of emerging sars-cov-2 variants.

CAKL: Commutative algebra k-mer learning of genomics The biological and clinical significance of emerging sars-cov-2 variants

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:54.105832Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c8a7c076-b897-4d64-943c-cb5bb41dd400 · outbound

This paper cites Omicron ba.

CAKL: Commutative algebra k-mer learning of genomics Omicron ba

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:53.923280Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3de2e2b7-e755-4883-9d6c-706ed5749691 · outbound

This paper cites Interactive tree of life (itol) v6: recent updates to the phylogenetic tree display and annotation tool.

CAKL: Commutative algebra k-mer learning of genomics Interactive tree of life (itol) v6: recent updates to the phylogenetic tree display and annotation tool

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-05T21:11:53.815545Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e0422880-12d5-491f-aa1c-06debe7da956 · outbound

This paper cites Topological Data Analysis and Topological Deep Learning Beyond Persistent Homology -- A Review.

CAKL: Commutative algebra k-mer learning of genomics Topological Data Analysis and Topological Deep Learning Beyond Persistent Homology -- A Review

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-05T21:11:53.288674Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation 1f5263b2-6e0e-4f6d-aac6-4bbfbbf04469 · inbound

$p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences cites this paper.

$p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences CAKL: Commutative algebra k-mer learning of genomics

Reference 7

Resolution: verified exact; arxiv_id, observed 2026-08-07T01:35:51.098571Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 297e1bbe-8b0f-46f9-9fbd-47acc8b203c6 · inbound

Commutative Algebra Learning for Protein Flexibility Analysis cites this paper.

Commutative Algebra Learning for Protein Flexibility Analysis CAKL: Commutative algebra k-mer learning of genomics

Reference 30

Resolution: verified exact; arxiv_id, observed 2026-08-07T01:35:51.098571Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.