A unified framework for data-driven construction of stochastic reduced models with state-dependent memory | Paper Citation Record

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

Reference 1

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This paper cites Dalton, and Roland R.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Dalton, and Roland R

Reference 2

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This paper cites Numerical integration of the extended variable generalized Langevin equation with a positive Prony representable memory kernel.The Journal of chemical physics, 139(4):044107, 2013.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Numerical integration of the extended variable generalized Langevin equation with a positive Prony representable memory kernel.The Journal of chemical physics, 139(4):044107, 2013

Reference 3

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This paper cites Canonical sampling through velocity rescaling.The Journal of Chemical Physics, 126(1), 2007.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Canonical sampling through velocity rescaling.The Journal of Chemical Physics, 126(1), 2007

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.817398Z

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Observation 8bfb2a5f-d07e-4570-9a39-6ee5fb5c0b16 · outbound

This paper cites Langevin equation with colored noise for constant-temperature molecular dynamics simulations.Physical review letters, 102(2):020601, 2009.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Langevin equation with colored noise for constant-temperature molecular dynamics simulations.Physical review letters, 102(2):020601, 2009

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.802159Z

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This paper cites Computation of the memory functions in the generalized Langevin models for collective dynamics of macromolecules.J.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Computation of the memory functions in the generalized Langevin models for collective dynamics of macromolecules.J

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This paper cites Calculating free energies using average force.The Journal of Chemical Physics, 115(20):9169–9183, 2001.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Calculating free energies using average force.The Journal of Chemical Physics, 115(20):9169–9183, 2001

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.773391Z

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This paper cites Computing generalized Langevin equations and generalized fokker-planck equations.Proc.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Computing generalized Langevin equations and generalized fokker-planck equations.Proc

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Observation c3e291ac-8b2f-4662-a545-2bfd3c871528 · outbound

This paper cites The heterognous multiscale methods.Commun.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory The heterognous multiscale methods.Commun

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.741905Z

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Observation 353d7763-7bb4-4d7b-b90d-8a366efc20f4 · outbound

This paper cites Het- erogeneous multiscale methods: A review.Communications in Computational Physics, 2(3):367–450, 2007.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Het- erogeneous multiscale methods: A review.Communications in Computational Physics, 2(3):367–450, 2007

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.728130Z

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This paper cites Transition-path theory and path-finding algorithms for the study of rare events.Annual Review of Physical Chemistry, 61(1):391–420, 2010.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Transition-path theory and path-finding algorithms for the study of rare events.Annual Review of Physical Chemistry, 61(1):391–420, 2010

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.712484Z

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This paper cites Active learning based sampling for high-dimensional nonlinear partial differential equations.Journal of Computational Physics, 475:111848, 2023.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Active learning based sampling for high-dimensional nonlinear partial differential equations.Journal of Computational Physics, 475:111848, 2023

Reference 12

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Observation 4e5a3e12-569d-4dff-af81-620108c2e0f3 · outbound

This paper cites Failure-informed adaptive sampling for pinns.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Failure-informed adaptive sampling for pinns

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.682869Z

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Observation b4c1dc8b-e358-44a5-a29d-a7b2d908f0a6 · outbound

This paper cites Data-driven learning of the generalized langevin equation with state-dependent memory.Physical Review Letters, 133(7):077301, 2024.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Data-driven learning of the generalized langevin equation with state-dependent memory.Physical Review Letters, 133(7):077301, 2024

Reference 14

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.656273Z

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Observation 66ce9e0f-2e53-4cef-bf49-a8ba0a5208f5 · outbound

This paper cites Lincs: A linear constraint solver for molecular simulations.Journal of Computational Chemistry, 18(12):1463–1472, 1997.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Lincs: A linear constraint solver for molecular simulations.Journal of Computational Chemistry, 18(12):1463–1472, 1997

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.642073Z

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Observation 2b2552e7-86cb-4a4c-8582-98efa34e38e9 · outbound

This paper cites Mori– Zwanzig formalism as a practical computational tool.Faraday discuss., 144:301–322, 2010.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Mori– Zwanzig formalism as a practical computational tool.Faraday discuss., 144:301–322, 2010

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.628486Z

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Observation 3b95b6fc-1d7c-4b19-a8bb-6c9d13e3e4c7 · outbound

This paper cites Comparison of multiple amber force fields and development of improved pro- tein backbone parameters.Proteins: Structure, Function, and Bioinformatics, 65(3):712– 725, 2006.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Comparison of multiple amber force fields and development of improved pro- tein backbone parameters.Proteins: Structure, Function, and Bioinformatics, 65(3):712– 725, 2006

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.614862Z

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.601116Z

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Observation b84cfa3d-3d84-4917-a9d0-bca7a4a6f270 · outbound

This paper cites Iterative reconstruction of memory kernels.Journal of Chemical Theory and Computation, 13(6):2481–2488, 2017.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Iterative reconstruction of memory kernels.Journal of Chemical Theory and Computation, 13(6):2481–2488, 2017

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.587370Z

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Observation 7d698885-31ff-4aed-9e73-c7e708ebe0e8 · outbound

This paper cites Kevrekidis, C.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Kevrekidis, C

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.573083Z

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Observation a01506df-03a6-4c9e-9ae5-9e1df4c82f6c · outbound

This paper cites Kevrekidis and Giovanni Samaey.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Kevrekidis and Giovanni Samaey

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.559137Z

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Observation 701d97b3-f3fc-4277-b9f1-21293f84cfed · outbound

This paper cites Adam: A method for stochastic optimization.Interna- tional Conference on Learning Representations (ICLR), 12 2015.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Adam: A method for stochastic optimization.Interna- tional Conference on Learning Representations (ICLR), 12 2015

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.545544Z

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Observation 6c189abf-e8ed-4a50-bf49-e2c62dd0f3c6 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Observation 9f330aff-ecb2-4ad8-8667-3f66e936a030 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Rosenberg, Djamal Bouzida, Robert H

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.517659Z

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Observation 1ec86d3c-ed95-4ada-8ff2-6220111a72af · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Escaping free-energy minima.Proceedings of the National Academy of Sciences, 99(20):12562–12566, 2002

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.503083Z

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Collective Langevin dynamics of conformational motions in proteins.J

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.475730Z

Source-reported events for the cited work

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.462024Z

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

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Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.448868Z

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Observation 3e079638-2681-4059-8d3a-63694db392c0 · outbound

This paper cites Incorporation of memory ef- fects in coarse-grained modeling via the Mori-Zwanzig formalism.The Journal of chemical physics, 143(24):243128, 2015.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Incorporation of memory ef- fects in coarse-grained modeling via the Mori-Zwanzig formalism.The Journal of chemical physics, 143(24):243128, 2015

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.435436Z

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Observation b5164fc8-4a7d-4eaf-b697-e13bd29ef935 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Gromacs 2019.2 source code, April 2019

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Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.421447Z

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Observation d153a95e-8f59-40a6-b62d-07ac3a8f2fab · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Consensus-based adaptive sampling and approximation for high-dimensional energy landscapes

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Resolution: verified exact; local_arxiv, observed 2026-08-04T22:41:43.112577Z

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Observation 8f0dddf9-25be-4789-8866-1b154a1af601 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Construction of coarse-grained molecular dynamics with many- body non-markovian memory.Physical Review Letters, 131(17):177301, 2023

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Observation ea8ad39d-708d-49dd-b6cc-d60b00eeecaf · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory On the generalization ability of coarse-grained molecular dynam- ics models for nonequilibrium processes.Multiscale Modeling&Simulation, 23(2):816– 837, 2025

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory The derivation and approximation of coarse-grained dynamics from Langevin dynamics.The Journal of Chemical Physics, 145(20):204117, 2016

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Observation fd234fb3-b892-4007-ae83-df56da986fc0 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Coarse-graining langevin dynamics using reduced- order techniques.Journal of Computational Physics, 380:170–190, 2019

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Observation 63343e4e-2d3f-42d2-96a6-ec5f3c8d6e7c · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory A temperature accelerated method for sam- pling free energy and determining reaction pathways in rare events simulations.Chemical Physics Letters, 426(1):168 – 175, 2006

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Observation 4018055b-0474-4da3-94af-8e40b202860a · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Settle: An analytical version of the shake and rattle algorithm for rigid water models.Journal of Computational Chemistry, 13(8):952– 962, 1992

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Observation ae547a7d-44f5-433b-924d-d064adc5d866 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Transport, collective motion, and Brownian motion.Progress of Theoretical Physics, 33(3):423–455, 1965

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Observation 6750d46c-56a4-42ce-b4b8-446c7ac81ed3 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Polymorphic transitions in single crystals: A new molecular dynamics method.Journal of Applied Physics, 52(12):7182–7190, 1981

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Observation 3405ffbf-4867-466a-a549-809108d4208c · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Machine learning memory kernels as closure for non-Markovian stochastic processes

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Observation 952d6734-b975-4785-8eae-f7c2414193d9 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Data-driven construction of stochastic reduced dy- namics encoded with non-markovian features.The Journal of Chemical Physics, 158(3), 2023

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Observation 6d58775e-c89f-4733-a8e6-00574da05265 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Adaptive deep density approximation for fokker-planck equations.Journal of Computational Physics, 457:111080, 2022

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Observation 5f859293-d46c-44f6-a4a5-e163854748e1 · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Adversarial Adaptive Sampling: Unify PINN and Optimal Transport for the Approximation of PDEs

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Observation 4da2db93-c663-4767-9aa0-8399a928b66a · outbound

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A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Torrie and J.P

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Observation 9bba6bda-9277-4382-bd3b-7facacacf570 · outbound

This paper cites Plumed 2: New feathers for an old bird.Computer physics communications, 185(2):604–613, 2014.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Plumed 2: New feathers for an old bird.Computer physics communications, 185(2):604–613, 2014

Reference 47

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.245468Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 62e6019a-819f-4ebe-8f72-02f40d3dab4b · outbound

This paper cites Likelihood-based non-markovian models from molecular dynamics.Pro- ceedings of the National Academy of Sciences, 119(13):e2117586119, 2022.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Likelihood-based non-markovian models from molecular dynamics.Pro- ceedings of the National Academy of Sciences, 119(13):e2117586119, 2022

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.231955Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation b8014574-6b21-42fd-96ce-b425bba75ee4 · outbound

This paper cites Position-dependent memory kernel in gener- alized Langevin equations: Theory and numerical estimation.The Journal of Chemical Physics, 156(24):244105, 06 2022.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Position-dependent memory kernel in gener- alized Langevin equations: Theory and numerical estimation.The Journal of Chemical Physics, 156(24):244105, 06 2022

Reference 49

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.217848Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c8aac304-e33e-4cb2-afe9-4ad52607e4cd · outbound

This paper cites Ab initio generalized langevin equation.Pro- ceedings of the National Academy of Sciences, 121(14):e2308668121, 2024.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Ab initio generalized langevin equation.Pro- ceedings of the National Academy of Sciences, 121(14):e2308668121, 2024

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.202465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 543fb42c-4033-4cad-9fcc-1ec1a52e76d2 · outbound

This paper cites Coarse-graining conformational dynamics with multidimen- sional generalized langevin equation: How, when, and why.Journal of Chemical Theory and Computation, 20, 2024.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Coarse-graining conformational dynamics with multidimen- sional generalized langevin equation: How, when, and why.Journal of Chemical Theory and Computation, 20, 2024

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.186514Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 529daae0-edcb-4ec9-be81-f5449ec36c34 · outbound

This paper cites Learning stochastic dynamics with statistics-informed neural network.Journal of Computational Physics, 474:111819, 2023.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Learning stochastic dynamics with statistics-informed neural network.Journal of Computational Physics, 474:111819, 2023

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.172087Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 74700c60-6b1a-43d3-a20a-b0f0e8cdf57d · outbound

This paper cites Faber approximation of the Mori-Zwanzig equation.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Faber approximation of the Mori-Zwanzig equation

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.157407Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 29e6fe9c-07ae-4d59-baab-11407422d05f · outbound

This paper cites Generalized langevin equations for systems with local interactions.Journal of Statistical Physics, 178:1217, 2020.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Generalized langevin equations for systems with local interactions.Journal of Statistical Physics, 178:1217, 2020

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-04T22:41:43.141887Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation aecfb2c8-fc24-4a42-8e81-a95823ee23c0 · outbound

This paper cites an unresolved cited work.

A unified framework for data-driven construction of stochastic reduced models with state-dependent memory Unresolved cited work

Reference 55

Resolution: unresolved; raw_fallback, observed 2026-08-04T22:41:43.126868Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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