Paper Citation Record · LEDGER

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction

As of 10 August 2026, this Paper Citation Record lists 40 of 40 outbound references and 0 inbound Pith citation observations for arXiv:2606.21241.

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pith.paper-citation-record.v1
2606.21241 v1

Coverage vector

measured 40 of 40 reference resolution

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Source: paper_references, paper_reference_links, observed 2026-06-26T14:24:38.218228Z

measured 40 of 40 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-10T06:31:04.303077+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

40 of 40 outbound references displayed

verified exact3
verified fuzzy0
unresolved37
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External citation measurements

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Outbound references

Observation 3fdbd18e-2b78-48a3-afe4-59f410ac00cb · outbound

This paper cites Principles that govern the folding of protein chains.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Principles that govern the folding of protein chains

Reference 1

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 12361e3a-6d83-4df1-892a-4490d6bc7e20 · outbound

This paper cites Non-variational quantum combinatorial optimisation.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Non-variational quantum combinatorial optimisation

Reference 2

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 7962cde8-b8b5-4d13-822a-3cd297cbc5b8 · outbound

This paper cites Benchmarking Quantum Heuristics: Non-Variational QWOA for Weighted Maxcut.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Benchmarking Quantum Heuristics: Non-Variational QWOA for Weighted Maxcut

Reference 3

Resolution: verified exact; arxiv_id, observed 2026-07-04T06:29:37.885020Z

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No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 7b7c15e5-8935-4c9d-8ebb-158283ed5dc4 · outbound

This paper cites Macmillan, 2007.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Macmillan, 2007

Reference 4

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 90969a41-250c-4ca0-af8c-bbc1c2b736c8 · outbound

This paper cites Protein folding in the hydrophobic- hydrophilic (hp) is np-complete.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Protein folding in the hydrophobic- hydrophilic (hp) is np-complete

Reference 5

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation a01c401d-2ee3-4f9c-84d9-330bc623f5b1 · outbound

This paper cites Peptide conformational sampling using the Quantum Approximate Optimization Algorithm.npj Quantum Information, 9(1):70, July 2023.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Peptide conformational sampling using the Quantum Approximate Optimization Algorithm.npj Quantum Information, 9(1):70, July 2023

Reference 6

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation a1aa05b3-ba65-41b3-93cd-fb2b8bc34e2f · outbound

This paper cites Protein folding in the landscape perspective: Chevron plots and non-arrhenius kinetics.Proteins: Structure, Function, and Bioinformatics, 30(1):2–33, 1998.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Protein folding in the landscape perspective: Chevron plots and non-arrhenius kinetics.Proteins: Structure, Function, and Bioinformatics, 30(1):2–33, 1998

Reference 7

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 198be29b-9414-414d-907e-0fa3779b036d · outbound

This paper cites DiFilippo, Jun Qin, Daniel Blankenberg, and Omar Shehab.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction DiFilippo, Jun Qin, Daniel Blankenberg, and Omar Shehab

Reference 8

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation fa861755-890a-4276-b388-6e900675f9ab · outbound

This paper cites Engineering protein-based ther- apeutics through structural and chemical design.Nature communications, 14(1):2411, 2023.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Engineering protein-based ther- apeutics through structural and chemical design.Nature communications, 14(1):2411, 2023

Reference 9

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 38f2b680-eb71-452a-b968-6ca4db8e5b6b · outbound

This paper cites A Quantum Approximate Optimization Algorithm.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction A Quantum Approximate Optimization Algorithm

Reference 10

Resolution: verified exact; local_arxiv, observed 2026-07-04T06:29:37.887475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 1611a136-e6e7-4a07-8cb9-80e144505318 · outbound

This paper cites Quantum encoding of functions and images with matrix product states.Physical Review A, 113(5):052616, 2026.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quantum encoding of functions and images with matrix product states.Physical Review A, 113(5):052616, 2026

Reference 11

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 11bcbc47-5b6f-4b4d-a74a-005178fcee43 · outbound

This paper cites Protein structure prediction: challenges, advances, and the shift of research paradigms.Genomics, proteomics & bioinformatics, 21(5):913–925, 2023.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Protein structure prediction: challenges, advances, and the shift of research paradigms.Genomics, proteomics & bioinformatics, 21(5):913–925, 2023

Reference 12

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 4867ff4e-283e-4d5b-bd80-51738513da59 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021

Reference 13

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation bdd6ad0c-4749-48f5-aef6-2c7d2cb0c51e · outbound

This paper cites Quantum annealing in the transverse ising model.Physical Review E, 58(5):5355, 1998.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quantum annealing in the transverse ising model.Physical Review E, 58(5):5355, 1998

Reference 14

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 69a8ada9-09d4-437c-9ebc-c15d7a38635b · outbound

This paper cites Are there pathways for protein folding?Journal de chimie physique, 65:44–45, 1968.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Are there pathways for protein folding?Journal de chimie physique, 65:44–45, 1968

Reference 15

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 86ee2dc9-e271-4284-9852-3629591fbcdc · outbound

This paper cites Advantages and limitations of alphafold in structural biology: Insights from recent studies.The Protein Journal, pages 1–17, 2025.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Advantages and limitations of alphafold in structural biology: Insights from recent studies.The Protein Journal, pages 1–17, 2025

Reference 16

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 25479927-b1fd-4051-b14a-b662b0969777 · outbound

This paper cites Merz Jr, Abdullah Ash Saki, Tomas Radivoyevitch, Frank DiFilippo, Jun Qin, Omar Shehab, and Daniel Blankenberg.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Merz Jr, Abdullah Ash Saki, Tomas Radivoyevitch, Frank DiFilippo, Jun Qin, Omar Shehab, and Daniel Blankenberg

Reference 17

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation b6ccb37e-a0f3-42f8-ae4e-c5690770b413 · outbound

This paper cites Ising formulations of many np problems.Frontiers in physics, 2:74887, 2014.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Ising formulations of many np problems.Frontiers in physics, 2:74887, 2014

Reference 18

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation e915b688-0cc4-46a9-bd02-6265a752cbaf · outbound

This paper cites A quantum walk-assisted approximate algorithm for bounded np optimisation problems.Quantum Information Processing, 18(3):1–18, 2019.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction A quantum walk-assisted approximate algorithm for bounded np optimisation problems.Quantum Information Processing, 18(3):1–18, 2019

Reference 19

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 5ea02ffc-e0ad-40dd-8473-af7386aeb098 · outbound

This paper cites A framework for optimal quantum spatial search using alternating phase-walks.Quantum Science & Technology, 6(4):045029, 2021.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction A framework for optimal quantum spatial search using alternating phase-walks.Quantum Science & Technology, 6(4):045029, 2021

Reference 20

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 4a1a1030-6dcd-4e69-8fb7-fad71f0b7d21 · outbound

This paper cites Combinatorial optimization via highly efficient quantum walks.Physical Review Research, 2(2):023302, 2020.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Combinatorial optimization via highly efficient quantum walks.Physical Review Research, 2(2):023302, 2020

Reference 21

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation cb93ba1b-c824-4f4e-ada1-a6751fbf00e3 · outbound

This paper cites Quantum optimisation for continuous multivariable functions by a structured search.Quantum Science and Technology, 8(4):045013, 2023.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quantum optimisation for continuous multivariable functions by a structured search.Quantum Science and Technology, 8(4):045013, 2023

Reference 22

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 805a1a31-e52d-4bb7-bbcc-37ac365d08c0 · outbound

This paper cites Quop_mpi: A framework for parallel simulation of quantum variational algorithms.Journal of Computational Science, 62:101711, 2022.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quop_mpi: A framework for parallel simulation of quantum variational algorithms.Journal of Computational Science, 62:101711, 2022

Reference 23

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Unavailable: canonical work link unavailable.

Observation 3ecbcb1e-ddc2-474a-8360-8bf36f5859ea · outbound

This paper cites Quantum walk informed variational algorithm design.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quantum walk informed variational algorithm design

Reference 24

Resolution: verified exact; arxiv_id, observed 2026-07-04T06:29:37.890245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation fde8542d-3d39-4775-868d-c096d8ebe681 · outbound

This paper cites Jernigan.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Jernigan

Reference 25

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 7a9e42f8-6382-443d-a7c1-f27f6f9f23b0 · outbound

This paper cites The protein folding problem: The role of theory.Journal of molecular biology, 433(20):167126, 2021.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction The protein folding problem: The role of theory.Journal of molecular biology, 433(20):167126, 2021

Reference 26

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 995aa563-7e56-4b49-be88-e01e60a61acc · outbound

This paper cites Finding low-energy conformations of lattice protein models by quantum annealing.Scientific reports, 2(1):571, 2012.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Finding low-energy conformations of lattice protein models by quantum annealing.Scientific reports, 2(1):571, 2012

Reference 27

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 69df8bdd-c5fe-4235-9fe1-e514cbea1afb · outbound

This paper cites A variational eigenvalue solver on a photonic quantum processor.Nature communications, 5(1):4213, 2014.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction A variational eigenvalue solver on a photonic quantum processor.Nature communications, 5(1):4213, 2014

Reference 28

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 560164c9-0ebb-4336-8229-8dd6e383646a · outbound

This paper cites Quantum annealing: An overview.Philosophical Transactions of the Royal Society A, 381(2241):20210417, 2023.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quantum annealing: An overview.Philosophical Transactions of the Royal Society A, 381(2241):20210417, 2023

Reference 29

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 49fdee91-0175-4566-a955-392bafe51724 · outbound

This paper cites Barkoutsos, Stefan Woerner, and Ivano Taver- nelli.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Barkoutsos, Stefan Woerner, and Ivano Taver- nelli

Reference 30

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 9b4f37dc-175e-4fee-a9a3-40af588ac0a2 · outbound

This paper cites Fast procedure for reconstruction of full-atom protein models from reduced representations.Journal of compu- tational chemistry, 29(9):1460–1465, 2008.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Fast procedure for reconstruction of full-atom protein models from reduced representations.Journal of compu- tational chemistry, 29(9):1460–1465, 2008

Reference 31

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 71feb2b4-f260-4d58-966a-efe9c4d927b9 · outbound

This paper cites Alphafold and implications for intrin- sically disordered proteins.Journal of molecular biology, 433(20):167208, 2021.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Alphafold and implications for intrin- sically disordered proteins.Journal of molecular biology, 433(20):167208, 2021

Reference 32

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 7933eeec-d9ab-4390-bc53-1aa58db24b03 · outbound

This paper cites Quan- tum annealing for industry applications: Introduction and review.Reports on Progress in Physics, 85(10):104001, 2022.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Quan- tum annealing for industry applications: Introduction and review.Reports on Progress in Physics, 85(10):104001, 2022

Reference 33

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation ead9a7a6-2fb1-4938-9ae0-b5a9f1cd4909 · outbound

This paper cites A test of lattice protein folding algorithms.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction A test of lattice protein folding algorithms

Reference 34

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation f71d38a9-35c6-4bba-a675-8b5b0c19ed6c · outbound

This paper cites Bench- marking lie-algebraic pretraining and non-variational qwoa for the maxcut problem.arXiv e-prints, pages arXiv–2512, 2025.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Bench- marking lie-algebraic pretraining and non-variational qwoa for the maxcut problem.arXiv e-prints, pages arXiv–2512, 2025

Reference 35

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 13def67f-56fa-4cc9-824a-9c9eb95cc198 · outbound

This paper cites Qdockbank: A dataset for ligand docking on protein fragments predicted on utility-level quantum computers.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Qdockbank: A dataset for ligand docking on protein fragments predicted on utility-level quantum computers

Reference 36

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 57f6143b-2718-411c-a8c8-4a35812e2f29 · outbound

This paper cites Efficient quantum circuits for non-unitary and unitary diagonal operators with space-time-accuracy trade-offs.ACM Transactions on Quantum Com- puting, 6(2):1–43, 2025.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Efficient quantum circuits for non-unitary and unitary diagonal operators with space-time-accuracy trade-offs.ACM Transactions on Quantum Com- puting, 6(2):1–43, 2025

Reference 37

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 76099c72-df4c-45d7-8412-1a7c247a7161 · outbound

This paper cites , ρ100 are calculated.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction , ρ100 are calculated

Reference 38

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 1f263562-f243-4f2d-a9b5-c2793b3f24d3 · outbound

This paper cites an unresolved cited work.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction Unresolved cited work

Reference 39

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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Observation 73820adc-177f-46bb-85f5-976a95637695 · outbound

This paper cites The results for several proteins, shows a95%confidence interval amplitude of approximately0 .05.

Assessing Cost Hamiltonian Reliability in Quantum Protein Structure Prediction The results for several proteins, shows a95%confidence interval amplitude of approximately0 .05

Reference 40

Resolution: unresolved; no resolver link, observed 2026-06-26T14:24:38.218228Z

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