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Paper Citation Record · LEDGER

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

As of 17 August 2026, this Paper Citation Record lists 49 of 49 outbound references and 2 inbound Pith citation observations for arXiv:2412.03595.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.03595 v1

Coverage vector

measured 49 of 49 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T06:03:52.609965Z

measured 51 of 51 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-16T06:30:59.297886+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-16T00:42:16.741414Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-16T00:42:17.011916Z

Reference resolution

49 of 49 outbound references displayed

  • verified exact1
  • verified fuzzy38
  • unresolved10
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 15595513-cc1e-4ae9-b21b-55cb53cc29fc · outbound

This paper cites A.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Parrinello, M

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.380656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.382793Z digest=sha256:54858c0b9984ee5b7fc2cd91e1b638f3b814469dbcc3ae4f23b996d9defe9a01

Observation 351ca2f6-f59d-45ae-9edd-ea0622220bd6 · outbound

This paper cites A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Bonomi, M.; Branduardi, D.; Camilloni, C.; Bussi, G

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.366025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.388119Z digest=sha256:ec93c23b609dcf494852fba7e9a0f22afcf425ceba9f734f12f1f0d6102b7568

Observation 41a70cef-423a-489d-9c9c-73a4c494d7c2 · outbound

This paper cites COVID-19 and the academy: It is time for going digital.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem COVID-19 and the academy: It is time for going digital

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.350389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.392654Z digest=sha256:d2e64b5970624cc23051ff4efc9e1fe3d1b9534cd4eac6d92f7b5b6a2f7cfe6c

Observation db7a7676-c8ca-4f45-9f7a-ef22ceb8209b · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 4

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.334582Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.397175Z digest=sha256:d72d198e4290c5a7abc514f4ae6287e58308ad79916d84c61ec2287f4b32bfe5

Observation d737dbf0-5fef-4cbb-8dd0-c2664ac14e53 · outbound

This paper cites In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Molecular Modeling of Proteins; Kukol, A., Ed.; Springer New York: New York, NY, 2015; pp 151--171

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.318750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.402310Z digest=sha256:3e4180bf31d7e51c83c40f5d68f62fbc4895182b89cab6cb412a9d2b97e477cb

Observation cd9b7e80-8ab3-48e7-a4ef-9dfc630706f8 · outbound

This paper cites In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem In Biomolecular Simulations: Methods and Protocols; Bonomi, M., Camilloni, C., Eds.; Springer New York: New York, NY, 2019; pp 313--340

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.303629Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.406649Z digest=sha256:513715017f91bad60c6b80f0617bc8a4d9d6fa6c46d31b26ea2af2ec56582902

Observation c84ef4cc-0024-4707-85d3-674a8a27c87d · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 7

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.288123Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.411679Z digest=sha256:f95952d20baf61ff4627639ea815a35f44aa32ee4d282b1403a91cbad5b15831

Observation 277041b0-5d68-4d7f-8663-d3231d80bf7f · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.272464Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.416473Z digest=sha256:75ee6c33259184ba586d98b443df9d3ba471e800989eca3127d927aa2538c76e

Observation 26a4c450-7e2b-4944-9ae3-7d1065f831c1 · outbound

This paper cites A.; Gasparotto, P.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Gasparotto, P

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.258607Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.421096Z digest=sha256:140f9491781ba4a73b37a9ff1c2c983a1636570b552a76fab6caffea2f1ee093

Observation e8b4ec77-aa0c-4e93-8daa-5238ed18fa6e · outbound

This paper cites A.; Giberti, F.; Sosso, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A.; Giberti, F.; Sosso, G

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.244010Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.426249Z digest=sha256:ff5ec5bbf10dc6083cb77a951f23ac4214054662f9498d25e78136510f8e889d

Observation e7fc1088-42f1-4857-bbd7-b30586bb2477 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 11

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:53.228258Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.431013Z digest=sha256:69126e35cfe2643d4a30ef26aa737b3a79d620a866e92bf226a2ee42aa1c9f2f

Observation e5bb3ad7-c490-4f30-af7f-ec7fe743a973 · outbound

This paper cites Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.213381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.435996Z digest=sha256:310324b8a4501baf46f58859f67927dee39de75ad833c75f001c0deb1d44eef1

Observation da0cc756-4cdd-4d88-afd2-183dcaf7ad57 · outbound

This paper cites Escaping free-energy minima.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Escaping free-energy minima

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.440893Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.440893Z digest=sha256:0794d8d92bbc86e2ace490dffe828c837e258885641e4e57d2a9eb3dea8a47f8

Observation 3d759ba4-58a8-4d0d-a94a-48135d0b67b4 · outbound

This paper cites Replica-exchange molecular dynamics method for protein folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Replica-exchange molecular dynamics method for protein folding

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.188771Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.445476Z digest=sha256:66d5aeab2f90c78b73e8d534fef244c9aad94714c11f17888958520ac4dad3b5

Observation a875991c-8f14-4c70-ae00-fb37f818c479 · outbound

This paper cites Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Analysis of the Results of Metadynamics Simulations by metadynminer and metadynminer3d

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.174200Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.450030Z digest=sha256:66ccf0654774533b9dc090908fba10609b5d4893f2e757c940997d79412eaf47

Observation c194b737-fc23-4b12-99a6-8c7106b577a3 · outbound

This paper cites A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A unified framework for machine learning collective variables for enhanced sampling simulations: mlcolvar

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.159694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.454621Z digest=sha256:78e7224266687ac7cbabe29838ae69faec11b31aa579198cc360227d98b095d4

Observation 1260fe96-1e30-4767-b9a0-904aef83e5f5 · outbound

This paper cites Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.459485Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.459485Z digest=sha256:f6fb203f5b83062f232556d1ca31961b4c58803e27259f09f0dd5d9d75c5f48e

Observation b2377515-6c34-46cd-b6ce-e60eac3ad915 · outbound

This paper cites Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.144847Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.465088Z digest=sha256:1ee3b189af7cd0d513983f16d4075c72a45b234f2a568aed58083977e6657efe

Observation b1693999-7642-4437-b737-8b07ea7e3cdf · outbound

This paper cites L.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem L.; Parrinello, M

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.129983Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.469619Z digest=sha256:89e70d04e9f7b90b40df8cb5417b8f4d305352eae00b5f26848966ee2e39c3f6

Observation 5e6bddc1-76c8-455b-a2b4-f49665a59afe · outbound

This paper cites Ligand binding free-energy calculations with funnel metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ligand binding free-energy calculations with funnel metadynamics

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.114722Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.474430Z digest=sha256:ec271c3ed98facdf5c1d80f3ca4dc502f5c56518072353ca4ba705300e0cf5f7

Observation 54e97e7f-663f-4210-a968-1b058a7d632c · outbound

This paper cites Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exploration vs Convergence Speed in Adaptive-Bias Enhanced Sampling

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.099378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.480661Z digest=sha256:a3533513461a6715feecbb8a9c16ecc14e9a09b363c6d7ddd13b1ad4d12076ce

Observation d2510c59-ce28-466e-8609-67cac29c16e5 · outbound

This paper cites D.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem D.; Voth, G

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.084750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.485357Z digest=sha256:0e1cbed9179195215d90b03c7bbbfc617f85ea0f54106d9d161c9d45af51115e

Observation 6653ca65-8f5d-401d-a8ac-15d2be36110e · outbound

This paper cites Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.070984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.489824Z digest=sha256:8b8b07d47a80e46886fc677eec0228f684cf99570f55fa4f89bbc2bc28cc2196

Observation a45970b0-1cc9-42c0-9b1d-51200ae0ced3 · outbound

This paper cites Molecular dynamics simulations of solutions at constant chemical potential.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Molecular dynamics simulations of solutions at constant chemical potential

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.057340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.495962Z digest=sha256:509c1b547d8e46e52d127a5d7f82f69d25121a4a52920394d9e92439ca719f48

Observation 2bc71ef7-8488-4334-bcfc-844c8a077ad0 · outbound

This paper cites Path Finding on High-Dimensional Free Energy Landscapes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Path Finding on High-Dimensional Free Energy Landscapes

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.042655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.500732Z digest=sha256:88b8bd3f39a07983f6e941a207cf4859a1fe5a8258c497b02b5097ab31282677

Observation 648a9edd-c842-49fb-86ec-d1377646baf4 · outbound

This paper cites Hamiltonian replica exchange in GROMACS: a flexible implementation.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Hamiltonian replica exchange in GROMACS: a flexible implementation

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.027462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.505600Z digest=sha256:736c63d316f1cdda726079331181d1e48c3ec2adf7be7231d42800200f452636

Observation edbf6073-3e45-440a-965d-cde206fbd249 · outbound

This paper cites Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Improving the Efficiency of Variationally Enhanced Sampling with Wavelet-Based Bias Potentials

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:53.012177Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.510109Z digest=sha256:f485b6b408c1b79e8b02e48910949ea51dc0605d7f0eeaa7bd7374f3a1281ffa

Observation 1181888f-b425-4f54-b942-21c14b9e2935 · outbound

This paper cites M.; Parrinello, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Parrinello, M

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.996444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.515132Z digest=sha256:c3ce1eb81e7e8645a1a8ca3aa942c1f45791cfce26b189ffa321f6e091923f10

Observation 1fcc0818-b463-44ec-abd4-9bca1c4e0952 · outbound

This paper cites A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Transfer Free Energy Based Implicit Solvent Model for Protein Simulations in Solvent Mixtures: Urea-Induced Denaturation as a Case Study

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.981826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.520373Z digest=sha256:c1c12c484c7da59b131e6bbeb55ec1a166ce98ac7ab5fce3b35aae881a216348

Observation 0d70dc51-6edb-426c-b94e-9f2b3d034dec · outbound

This paper cites J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem J.; Singh, Y.; Vanden-Eijnden, E.; Hocky, G

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.966427Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.524624Z digest=sha256:129a347665c09fd307ecc25e5c296ab231b29fca065cfea2d13911b0e606611a

Observation eb2bd7fb-4db9-415e-bdc3-320b0feb6b41 · outbound

This paper cites E.; Thomasen, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Thomasen, F

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.951338Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.529301Z digest=sha256:aa68409eae9b20675059a6e3276ae6b30b2d55e7679da857889b930cadc7d0f8

Observation 313a7096-e459-4821-b510-4878f70da6c1 · outbound

This paper cites Multi-replica biased sampling for photoswitchable -conjugated polymers.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Multi-replica biased sampling for photoswitchable -conjugated polymers

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.936632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.533313Z digest=sha256:479b01b9c99a5cc769a79d8827e98284d9de7fccda54de35093784d751821c51

Observation 4bfef365-a492-4fc3-a0f7-c368b4582778 · outbound

This paper cites Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Exhaustive Search of Ligand Binding Pathways via Volume-Based Metadynamics

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.920857Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.537346Z digest=sha256:1661f401b0871b967b6ab31c530ccfc94cbc280684ac9c7329e5f5ae2740deeb

Observation 1c2ea486-2516-49fd-870b-f3f95151fca6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 34

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.905814Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.541276Z digest=sha256:0f5f8dc33e0f40d0e534ba53ca1b83e1ce9fbf76804c3f3f654561849e7facff

Observation 76595791-909f-4537-91fc-6223ce75d57e · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 35

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.892152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.545188Z digest=sha256:3fac893870e1762d2e8c21364e7cf60e98fa81ea188ff78179c44a90b2990ff2

Observation 9d390169-48f7-4e0e-a7ff-e2d106a474a6 · outbound

This paper cites F.; Rotskoff, G.; Parrinello, M.; Voth, G.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Rotskoff, G.; Parrinello, M.; Voth, G

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.878447Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.549593Z digest=sha256:aa37f21c447e66e850b74d8729087e4b20c01beb5bf189d77f167e7cf10c1c6b

Observation a9cc22f3-e003-4ee4-adc0-aa913be707d7 · outbound

This paper cites Finding multiple reaction pathways of ligand unbinding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Finding multiple reaction pathways of ligand unbinding

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.863526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.554044Z digest=sha256:9e201d4d2ec612b40fd7048712a7044ad393610874e6ab196cce5edc870bcc69

Observation c8d149b5-e4cb-4117-81db-f0e215cb2d81 · outbound

This paper cites Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Recent Advances and Emerging Challenges in the Molecular Modeling of Mechanobiological Processes

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.847809Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.558150Z digest=sha256:37cc153fd9e0d1b72b5e24229d8a9af85085b10be22b6ff2c4cbd0123040e7be

Observation 7f905a28-be1b-47af-ae2e-f86b379d9f4d · outbound

This paper cites E.; Cavalli, A.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem E.; Cavalli, A

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.832245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.562400Z digest=sha256:bce1cb04b517b5ac4e7aab10f6df85b9a57c2c8564d9459cbfe1c808b345b40c

Observation f98770bf-cab3-48b3-bdb7-de210e4396c6 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.816166Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.566977Z digest=sha256:b8274cf4aa255c8360355a4b02026c6b7f26c0f18a36f3972d609cbeccba7841

Observation 37e85900-1b3b-469f-85c5-c67b0ef2fc53 · outbound

This paper cites F.; Zhang, S.; Vendruscolo, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem F.; Zhang, S.; Vendruscolo, M

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.800285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.571758Z digest=sha256:150e56bf25aff3e25e409f55a15c1ab208aa04f83f659122a739c5f22102cd06

Observation 5996cef8-547b-4e01-a5f4-9c5e963ecbbe · outbound

This paper cites PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.784755Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.576544Z digest=sha256:1c5a19e46d6456bb9b658dfe91c98d04b9b7807f1d2002f8ea5c19f4610672c9

Observation 066867cc-7f81-4955-8716-974078a20c67 · outbound

This paper cites an unresolved cited work.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Unresolved cited work

Reference 43

Resolution
unresolved
raw_fallback, observed 2026-08-12T06:03:52.768052Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.581311Z digest=sha256:699c574d35802669791d42b8397e35cd9aed2883208e539d4601495418737c93

Observation 07ae51d5-cdb2-4bf7-98b8-c56c60b8bf49 · outbound

This paper cites M.; Pietrucci, F.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem M.; Pietrucci, F

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.754035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.585947Z digest=sha256:5ab5afd8119b099ad23707434459791acaed38c1f2ae96b59c2336203b3e4361

Observation 37757052-a364-4711-98bf-b1afcab8853d · outbound

This paper cites Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Ab initio metadynamics determination of temperature-dependent free-energy landscape in ultrasmall silver clusters

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.740450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.590746Z digest=sha256:12e98868cf77182754f6ccf5abb797dd684cfb8db8cbbb85a4d9d2d901fccd31

Observation c2478e29-a734-494b-bf2a-4f0183f9dabe · outbound

This paper cites Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations

Reference 46

Resolution
verified exact
local_arxiv, observed 2026-08-12T06:03:52.676747Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.595499Z digest=sha256:389483e14dfe489c8bdaa56770abb277179da2eb04907c79deff2b8c4ee10bbe

Observation 4b392386-89c9-4858-b460-b436f9d64844 · outbound

This paper cites A Bias-Exchange Approach to Protein Folding.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem A Bias-Exchange Approach to Protein Folding

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.725572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.600371Z digest=sha256:fe757f9edce7bbf1a24d032b912385c32807da203545d5774ee12b0f6852d283

Observation f995c583-f514-4de4-b654-7dd3dfb9f9a6 · outbound

This paper cites V.; Garey, M.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem V.; Garey, M

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T06:03:52.710051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-12T06:03:52.605096Z digest=sha256:7af04da43a6336411a06ad636b509dc7890b40c30eeab167d516c777325118a1

Observation bf5855c6-a22b-4492-aeea-a913f61834e6 · outbound

This paper cites The need to implement FAIR principles in biomolecular simulations.

PLUMED Tutorials: a collaborative, community-driven learning ecosystem The need to implement FAIR principles in biomolecular simulations

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-12T06:03:52.609965Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-12T06:03:52.609965Z digest=sha256:e924bce40e9bbc4f3d9486213d958dd57693168004e81f6e06d576bd79f3f5d7

Pith citing papers

Observation 78feb186-6547-4b95-a6f3-ba126d8e0330 · inbound

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques cites this paper.

Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 168

Resolution
unresolved
no resolver link, observed 2026-08-10T23:21:30.420589Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-10T23:21:30.420589Z digest=sha256:5a8e2b60fce46e49197aa15305d45b0145228afbfadd13576d7f9870812502fc

Observation 7e34ac8a-4a9f-494a-b863-113ea7b51d1f · inbound

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations cites this paper.

Elucidating Ion Capture and Transport Mechanisms of Preyssler Anions in Aqueous Solutions Using Biased MACE-Accelerated MD Simulations PLUMED Tutorials: a collaborative, community-driven learning ecosystem

Reference 94

Resolution
verified exact
local_arxiv, observed 2026-08-16T00:42:17.020606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-16T06:30:59.297886+00:00.

source=arxiv_source observed=2026-08-16T00:42:16.741414Z digest=sha256:de94356e1b6a65500f48c4aeee095c8d99cbe9c0e76d80585e4d36eab4089bde