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Paper Citation Record · LEDGER

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates

As of 15 August 2026, this Paper Citation Record lists 96 of 96 outbound references and 1 inbound Pith citation observation for arXiv:2506.04219.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.04219 v2

Coverage vector

measured 96 of 96 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T10:52:49.295978Z

measured 97 of 97 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T08:55:58.122334Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

96 of 96 outbound references displayed

  • verified exact0
  • verified fuzzy42
  • unresolved50
  • parse uncertain4
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 65d3323d-e73f-4fa0-8abb-39c84a37adc5 · outbound

This paper cites These blood cells originate from hematopoietic stem and progenitor cells (HSPCs), which have the capacity to differentiate into many blood cell fates.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates These blood cells originate from hematopoietic stem and progenitor cells (HSPCs), which have the capacity to differentiate into many blood cell fates

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.639583Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.639583Z digest=sha256:391f8ae6d6847a9f4c509a1f216d0fd57d37f65ba578b7e8b9e616fe6907e431

Observation dc51c46a-5c36-42e5-bb52-e03356a804b6 · outbound

This paper cites Different transitions between these types have been established in homeostasis, injury, and transplant [54].

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Different transitions between these types have been established in homeostasis, injury, and transplant [54]

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.705296Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.705296Z digest=sha256:10030e40c2b4630c2a6522c30052b4e0fd00a8597d933b81ff0b10c76844924c

Observation fc06b7e5-b500-4893-8c8d-2f305ec7ff93 · outbound

This paper cites Wolpert, C.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wolpert, C

Reference 3

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.845807Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.845807Z digest=sha256:12bbca7ff843c3cc786a0e7c979dff794d644e5d23727c22aa4cadf993a5cbaa

Observation a835c2ca-9733-4a58-aa5c-53afd60a7459 · outbound

This paper cites Debat and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Debat and P

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.870583Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.870583Z digest=sha256:cbd47189aad06ad2e5147dce8267d552ea41f36be59a29e9217c57838e7e6ac4

Observation a9032c42-7b27-4975-9404-bba3fbaa80a9 · outbound

This paper cites Wagner,Robustness and evolvability in living systems(Princeton university press, 2013).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wagner,Robustness and evolvability in living systems(Princeton university press, 2013)

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.935486Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.935486Z digest=sha256:053848ab387cf8dd55d6d53f50cbeab959b89ee18a72b57bff815ec641cbe8c0

Observation 01f04d5a-583f-48f1-be57-ffba64bfd0ad · outbound

This paper cites Takahashi and S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Takahashi and S

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.939818Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.939818Z digest=sha256:8b2f24bfa367e03b491353487b7f6260ffe0a066e2b3b842fd30d10b520c5bc9

Observation 577df5ac-3253-4c16-a43c-3a2db65cdd3b · outbound

This paper cites Takahashi and S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Takahashi and S

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.943777Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.943777Z digest=sha256:dbe07f0d0a04b2c29e49c5b0de7f5d477e1de88e85369d7a9e49e4ba332ff54a

Observation f4b9dd5b-1733-4dbd-8ee6-8735946e74be · outbound

This paper cites Srivastava and N.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Srivastava and N

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.948242Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.948242Z digest=sha256:19ef9a4177704ffa1bd62c3b2925dc00d473e63cf800394f1b179d8562656780

Observation 9b3f670c-7b98-49a4-81f0-31a0b2d701dc · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.952713Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.952713Z digest=sha256:400bf157edf2ecc81010fcc76a6b6ca89ddf4b630854590c57c67847bee8e692

Observation 1c1373ec-b559-4f38-bd43-4d1053cc3b48 · outbound

This paper cites Trapnell, Genome research25, 1491 (2015).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Trapnell, Genome research25, 1491 (2015)

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.956822Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.956822Z digest=sha256:e5b8f0c9ccfed4041a9ece8f8d1813bc65630611707841ecefa990ee3b9dbc72

Observation 9ad7063b-7d61-43fe-be37-ffc0dc71f643 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.960739Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.960739Z digest=sha256:45dafcd440dd24fc382841981332807b43983a2183889f680d9cf828fadfe3ef

Observation 9ad7fbef-3b74-432c-bba5-26973000794e · outbound

This paper cites Svensson, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Svensson, R

Reference 12

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.964922Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.964922Z digest=sha256:a9c40637bac1a50bbc44f9c58353d327dc3649f33e8ac2a1bf900f5ca82edbd6

Observation 65b68f9a-d47d-49d6-b514-e2d8e74800f2 · outbound

This paper cites Jones, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Jones, J

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.968406Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.968406Z digest=sha256:eecffa0324e366f6c90734d018ee0b994a92e665b9eabc5f9708ad74a8efc955

Observation 86377995-4bd3-43f4-92dc-072e0165ff9c · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 14

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.972186Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.972186Z digest=sha256:af659f951cd25b192ea2f838f5362aa5fb6bf11c30778cd0bdc9ffc930e9efc4

Observation eede122a-e5a9-4782-880a-6c4c34e79999 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 15

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.976075Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.976075Z digest=sha256:d063f950e3149271b62772ea57015a7ac1416e78566a1493b2949b07705ea66d

Observation 23e082fa-849a-4b38-94f2-96dda7aa099f · outbound

This paper cites L¨ ahnemann, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates L¨ ahnemann, J

Reference 16

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.979883Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.979883Z digest=sha256:d82e6c0c5959b041c9ca1bcf503061181aa3d9729c7625ebce5237bed81906b0

Observation 5eae037d-8278-42a3-bb76-e4061400f502 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.983783Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.983783Z digest=sha256:ebcd13798ffd5c9fadd048d6c7c824246588895c2bf42f53aaf1e534881c1749

Observation 248d5158-ff4a-40a8-95a9-b58fe70a5467 · outbound

This paper cites Huang, Bioessays34, 149 (2012).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Huang, Bioessays34, 149 (2012)

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.359740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:48.987991Z digest=sha256:176589001561832f98e1b1122faf5aedf612df2b6f5264d1302f9f58cd5beeec

Observation ab774264-c910-4962-bb9a-00ca2885e496 · outbound

This paper cites Thom,Structural stability and morphogenesis(CRC press, 2018).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Thom,Structural stability and morphogenesis(CRC press, 2018)

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.346239Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation cc022b7b-e316-45f0-9a5a-d3b3a416240a · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 20

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.332426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:48.995405Z digest=sha256:ff78132c029ac73c10b79ce0c65ffed391ec6e4a16a0114070a8ba57e03a3a83

Observation 1b360054-1e9c-460a-9bee-50e0c8bb34d2 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:48.998971Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:48.998971Z digest=sha256:109e080c2d10ad293d8b439031f0c20ba50a0edb5e847ef3acd8ca85511a01cc

Observation 469409b5-1de3-4025-946c-3c128343efc5 · outbound

This paper cites Moris, C.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Moris, C

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.308455Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.002656Z digest=sha256:5f8effa3645716c39f6c7de9949a052de88f154239025b649370db5a2d52da93

Observation e5b63d8f-3b1b-4ec8-91cb-2c564ea48931 · outbound

This paper cites S´ aez, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, R

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.295353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.006454Z digest=sha256:38e7816724a65b03140bd7192ca6f775e57eb354686461800aa3eb93bbad6a96

Observation 874f724f-5f5e-409a-a90c-37fad3a15cd6 · outbound

This paper cites Wang, Journal of Biological Physics48, 1 (2022).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Wang, Journal of Biological Physics48, 1 (2022)

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.281987Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

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Observation db2b814c-1895-4a7c-ac10-5821cf2cbda7 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 25

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.269631Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.014293Z digest=sha256:5ea1a31e7a629e715ba6c32f7b3c939304f4d2eb6ff6514c304cb943aafb5101

Observation a2cde4de-d7bb-493a-b62e-760aee807662 · outbound

This paper cites Raju and E.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Raju and E

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.017862Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.017862Z digest=sha256:aa54a64b724421a20a771c85dd2cf998c7d25dff07a4681ddfce29bf48274025

Observation 4c68535f-5f3a-4402-aae7-b3bbf1a89d9d · outbound

This paper cites Camacho-Aguilar, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Camacho-Aguilar, A

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.256351Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.021682Z digest=sha256:59fc7ae3b65e0b4728961d4919a752afef03829f5edca101ef528a76b7be2841

Observation 8ec51f78-ebfb-41da-9745-51b72a86fca1 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 28

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.243963Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.025616Z digest=sha256:ce26368658373f4068fc7ad3efa0fc88015027da526349234e2842b6a564cc05

Observation acba2358-328e-49a5-a1db-af164dc54d04 · outbound

This paper cites Mochulska and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Mochulska and P

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.230817Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.029458Z digest=sha256:69736874310e5c5710d18c9dfdf586f974714f98b29ddb2c201c1ff21f9ffaa8

Observation affdc702-0796-417c-9d30-576dffae926d · outbound

This paper cites S´ aez, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, J

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.216384Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.033367Z digest=sha256:12de1bc964d6f35d64185d429100b0dc93a07824c2eea9d4dc76b3031340efbf

Observation 9aa9e008-cc8e-4fe5-8093-35b7162ef2bc · outbound

This paper cites Yampolskaya, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya, M

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.203613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.037203Z digest=sha256:1c06120fc4a125727bbe02dd8e1bae224adcd365be6c0f921843be27f7e7f355

Observation 1f7f3686-1047-4da2-90c0-4d4f439459f7 · outbound

This paper cites Grishechkin, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Grishechkin, A

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.190584Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.040837Z digest=sha256:3b9b5b7c3139a4ea962f5fec35dcdd039a0244e176483bb6f542eec1a264c1af

Observation 0077adfb-3d85-4841-ba56-b99d261fa033 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 33

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.177327Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.044830Z digest=sha256:29935c55bf7f97f827bc711da8137b5ad4415c13b5225310477bd76eecac6077

Observation 78ddb2ce-7308-4d06-a627-b01268e252c4 · outbound

This paper cites Olsson, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Olsson, M

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.164058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.048781Z digest=sha256:df1ca8945ef0d5f757e5705407d2c164edaa7b59bd06dd4eed219bc0af0ebad8

Observation f2d3b166-e34a-4023-b994-44db9961966d · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.052671Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.052671Z digest=sha256:b1fb90ec5713219e20cea5c7018a03e5fe60d760d69f29897bf2682cda68dc09

Observation f58522ff-7b9d-439f-8441-c797367e3d51 · outbound

This paper cites Krotov and J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Krotov and J

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.140690Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.056732Z digest=sha256:c129b9871e8d0e1c5581c97925a4adb30c7635a75916c177c40e2748684f9dc4

Observation 21cf3bff-54e3-4c7c-9e15-59dcacdea406 · outbound

This paper cites Yampolskaya and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya and P

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.127965Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.060467Z digest=sha256:74b3c976e5d81bb7e84dcb115d9e6ae59c19c69c6c2cadc4fe84dd1594d27810

Observation 79ef7d97-1f0d-4f77-8558-7173c547c4e5 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 38

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.115132Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.064184Z digest=sha256:998cc0cc59479bbb88866d685af35e7eaef91b11c603c57aea9b547f86792d48

Observation 1f8067c4-afae-41b7-9a92-62f787a143fb · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 39

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.102273Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.068047Z digest=sha256:704a1de61b53db54b6abd4683397bb52d354824cd3a6807a69a7a0fbafd8c7b1

Observation c3d3801a-23ab-404b-92d1-709639f59866 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 40

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.089217Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.071908Z digest=sha256:e277f0cb491414980e634a8947c4ef22c235903e2209e4c0595cae145b0ea215

Observation 4ae41d4f-78bc-40b4-a6b4-ffcf5ffaff20 · outbound

This paper cites Guo and J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Guo and J

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.076205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.076206Z digest=sha256:fb69559fbda6d88de2762efc754f7a3cfa98c6dd95c05511e4b2bdae252e46de

Observation e0108877-cab6-47b0-a8b2-7ac8739ce72a · outbound

This paper cites Ikonomou, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Ikonomou, M

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.064102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.080173Z digest=sha256:3c7d8b83059a2852f1146c7d10f4e5b67190d55be196d3aa177ac41d8d84435a

Observation 99df218b-e2bf-4076-b183-fbba5a18f178 · outbound

This paper cites Smart and A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Smart and A

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.051564Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.084094Z digest=sha256:f15bfcd0c520b3fefac0c8e9f489011379a8497d8102c1fe343c40f09895238f

Observation 4720fb82-e2d0-4c26-bb46-8740a27e7263 · outbound

This paper cites Karin, Development151, dev202997 (2024).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Karin, Development151, dev202997 (2024)

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.038894Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.088433Z digest=sha256:d61a6515063e2c4840d9ff9d0ba85d1afcd5e3445ce0988a05117c47840594e8

Observation b58636c8-b2d6-4a37-b55b-37facbd4e9c3 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 45

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.025848Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.092355Z digest=sha256:b6fda151eb21b31a3200f2552ece13bf108baa417aafc207fa298b06a4b7fedf

Observation 4fef2658-89e8-4d49-a305-051059af7de6 · outbound

This paper cites Souza and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Souza and P

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:50.013084Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.096787Z digest=sha256:530af20811c5c1a70d7ef831e2e787631c7458b1b6defebf5a68a5c5ead7fbe7

Observation 1b9f0263-6c5e-443a-a5bc-b41cfa2faa01 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 47

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:50.000066Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.100688Z digest=sha256:9bf05330abe8fa6cf0ae75326b289777bd693bdd41367cab54c6823d7eb10467

Observation 9e48a014-26c9-4e21-afcb-f488b929b577 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 48

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.987627Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.104926Z digest=sha256:4dc1cbcca02a10be0fc5ae9f32242e4e7f7ed1c266cdea3a9d21dee2e7da698f

Observation c057015c-47d8-4d7b-903d-65ff6c3e1c5a · outbound

This paper cites Yampolskaya and P.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Yampolskaya and P

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.975187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.113224Z digest=sha256:d3a4c9565ba331ab49a649cfecf33cbba0f34b45c1c442f250279b303c99196c

Observation 407827b1-16fb-41ca-9147-4a6474389414 · outbound

This paper cites Kanter and H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Kanter and H

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.963212Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.117171Z digest=sha256:16f30df15ef7363c96155f04fbea7c4cfe9ee3493af6d5c5e376aec6b6045513

Observation 68a61f58-d793-401e-91e6-17f459febb18 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 52

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.950631Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.120955Z digest=sha256:36e0300c64741cf4b49d5eeafb05e86f9c92836364b30db766f1af20ef8fbdba

Observation d799fe5d-f4dd-4c20-a79a-020382e870e9 · outbound

This paper cites Bialek,Biophysics: searching for principles(Princeton University Press, 2012).

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Bialek,Biophysics: searching for principles(Princeton University Press, 2012)

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.938572Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.124565Z digest=sha256:c3c4e299fdde0fd1f8795f2a7bc4c171a62276d29543d89cb5f6342b5c536be8

Observation d386ef59-f775-4c46-be3e-4e7873e9db0f · outbound

This paper cites Newhouse and M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Newhouse and M

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.925942Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.128058Z digest=sha256:6a8be0036813c51c51108f9bc07c6164a36d2d5ea1bc921e109b22636ac4a189

Observation 6ef2dd3a-4684-4816-b468-cc11a918fb7c · outbound

This paper cites Weinreb, A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Weinreb, A

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.912887Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.131986Z digest=sha256:e8a8d190f38a0717d179b89e8726840ff38c2b671e8ae526eb04c199b693c9e2

Observation 2ec6807b-d27c-412a-83c3-3657cd0ed275 · outbound

This paper cites Alysandratos, M.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Alysandratos, M

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.900336Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.135838Z digest=sha256:abeac96a1c3dfed3e601edaba85cc45796f75a031f1b34ef3a12a19520f4b174

Observation 11deb820-6eab-4bc0-b8e1-d36e10d34ab8 · outbound

This paper cites Hawkins, S.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Hawkins, S

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.887803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.140117Z digest=sha256:b924b8f895798b1093a8a8ebfcdfecc82853dad46c3b76e3f9824d085f3297fc

Observation 56862ef1-4cd9-4049-aa21-d7196731ca26 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 58

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.875111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.144084Z digest=sha256:38ff281603f435819289835a0150c594875cbd9cbef65e952c5fc1ff8892bfe2

Observation 858f37ac-4ca6-4add-ab6d-87c42a1786fd · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 59

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.863027Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.147890Z digest=sha256:2cd74fe386f90b7342350b58592d1994bf5af35779cae45b6f02c7caf17ad46f

Observation ace1fd66-72d4-419f-adb3-f003ae0a96f0 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 60

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.849897Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.151694Z digest=sha256:c700e622a07b0570371809012d69a85e34b047cae4fadd699adafa1ab49a6c95

Observation 373e59af-d9c2-4525-8ce1-4a8ccfa166bd · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 61

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.836797Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.155225Z digest=sha256:cde54d10198f4b94152dc578843499d9a866038adb3628f499f164b1edd19bd2

Observation 4c635db8-d51e-4f98-9270-4b66d960e03e · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 62

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.823279Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.159773Z digest=sha256:2222dd546fd04b723f82b2aa552bdeceb6ca35adf3de073091067cdce3949009

Observation d769e76b-ee90-4051-a976-dfbcc8151868 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 63

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.809416Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.163621Z digest=sha256:e07dd4dc8d56544a0f51468e9b3d171b47b5a9f1aad13ecd4d983c93f24052c5

Observation bbb95109-af0e-4b56-b2dd-944e894f0287 · outbound

This paper cites Pardo-Saganta, B.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Pardo-Saganta, B

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.786318Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.167356Z digest=sha256:09b86d100272b3c39e409126763cb5c707eaf94672f9a49d56ba5dcba68e3872

Observation 89ca9de6-caa1-4e96-a261-217f49f65ce6 · outbound

This paper cites Goetz, H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Goetz, H

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.773113Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.171114Z digest=sha256:89803c7021c04b72fae133b6b0b99c4f75cd80bca4bada747272ba930f0531c0

Observation 0cac5db2-1b0f-429c-be58-02d38141498d · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 66

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.759421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.174832Z digest=sha256:5c85ae713817b1747ac581689c686f3c64595306040c8058257da7fc6671662d

Observation 9322644e-47d8-4170-a463-63e058fe2ffe · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 67

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.746226Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.178860Z digest=sha256:53f2679c108a4080003330c82e3f2b5a5d8183e32926009102f2c916c0733038

Observation 33a7343a-8274-46fb-aa72-d3728bfb421b · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 68

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.732781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.182756Z digest=sha256:2b7ef19984628cbecd67af6dc871132ac0d198d85f6d58384ec28002d88409e1

Observation eaa6c2e5-b438-451e-95a6-7150a8346e92 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 69

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.719682Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.186303Z digest=sha256:6ae81a4085a0922ac72c301dfe4c6bcece6f691a84752587c7e9fca68beb6117

Observation 02f18f12-1ab5-46ad-a6b9-67c7c0561ed7 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 70

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.707079Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.190276Z digest=sha256:82b16eb46928dcf42f7d31131f7a998224058fee4a397cd495f4da4e63405448

Observation d2d04100-ad72-46b0-af43-68f866663647 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 71

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.693748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.194276Z digest=sha256:0d3f852c72538f154cdb445bce1696fa056456e91e4e71df43cc630f4190d00f

Observation f228f641-4b93-4c68-907b-a27a5b33b3d3 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 72

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.681401Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.198239Z digest=sha256:6d823025db4bb4ede62bcd2f0fb778e2aa501f344fe379be0d39c0552b582fbc

Observation 20606bd5-024e-4c1c-a768-38df717a8f94 · outbound

This paper cites Simulation details 8.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Simulation details 8

Reference 73

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.668411Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.202659Z digest=sha256:bf0b4a95326c4613e5f05bcb237950a3f2df5da40b2e561b011065c25a68630e

Observation 1d44ee0b-21b4-4b5d-9b5c-aa00cf7aae10 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 74

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.655229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.206554Z digest=sha256:90486c8018e6d7ba5c44877a5a61f47a32288380416ed6880ef3d86fc958bbdf

Observation c06d6e92-07bb-4801-b4bf-76cd4751369f · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 75

Resolution
parse uncertain
raw_fallback, observed 2026-08-07T10:52:49.642812Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.210145Z digest=sha256:e64c159f14753694a1f6c98f667453ba124e3476a5eec890823014613ec05dfd

Observation d3f0b992-1677-4cfc-9c37-aeac7b0a9654 · outbound

This paper cites Limitations of the model 12 References 12 A.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Limitations of the model 12 References 12 A

Reference 76

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.629015Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.214331Z digest=sha256:865e03a733a648498ab9a2ba018be4c1b95e3109ba5b76554424bba54a294d9d

Observation c7893f28-7be5-4f9b-8982-c91e6ef5426d · outbound

This paper cites As explained in Randet al.[1], two of the simplest bifurcations with three attractors are the binary cusp and the heteroclinic flip.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates As explained in Randet al.[1], two of the simplest bifurcations with three attractors are the binary cusp and the heteroclinic flip

Reference 77

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.615723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.218081Z digest=sha256:02abe79738eb85e56edee1822ccc76605e678c3fd4da5499d9e495d5797d88e3

Observation 570c5515-071e-4d18-8124-7af0552f05ff · outbound

This paper cites In our model, alignment with each cell type is given its own axis, set by the Hopfield-inspired order parametersm µ.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates In our model, alignment with each cell type is given its own axis, set by the Hopfield-inspired order parametersm µ

Reference 78

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.601398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.222083Z digest=sha256:2fa2f7c36976eb922cb204f605d52de1cec7ff82c11e49048cf6959797eb9fa6

Observation fe1e9eeb-dd37-4234-aa82-fd184717cc64 · outbound

This paper cites Double cusp B.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Double cusp B

Reference 79

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.587679Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.226065Z digest=sha256:31eda99a9bdcdf46424d4bdf04d1dc30dfa9d009a0107e0d43e60c706d996df0

Observation 50bbdcf9-4995-4281-a548-190a79d37881 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 80

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.574577Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.229893Z digest=sha256:af32e5908763c90412d1cc7afa23172276b58bee0b0b3f197a9164c9d5bde0ce

Observation e8538158-2cd2-45cd-a34c-106534f50b0b · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 81

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.562213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.233723Z digest=sha256:162c53949565bab5cef8d199dc8370375a1216c2fd67a5dfcce2e4ee58cad10e

Observation 219944fd-a717-4e20-bc18-0c5648102b1c · outbound

This paper cites For trans- forming from cell-type spacem µ to landscape space ˜x,˜y, we defineH=K −1.h x,y µ denote the entries ofHsuch that ˜x= P µ hx µmµ and ˜y= P µ hy µmµ.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates For trans- forming from cell-type spacem µ to landscape space ˜x,˜y, we defineH=K −1.h x,y µ denote the entries ofHsuch that ˜x= P µ hx µmµ and ˜y= P µ hy µmµ

Reference 82

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.549640Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.237513Z digest=sha256:65270ef59fd9daa63469915400c1f18c05231319ddc7060c61913cad432c4252

Observation bbd0b575-3362-4bf5-9bd2-192ad5e94e8f · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 83

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.537105Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.241187Z digest=sha256:1db7a06c98158cd6d623986de672c968ff0e2ad74d40acce7a6c02b86c30261c

Observation 57f54a95-cc22-4687-acc5-9a327c82bed2 · outbound

This paper cites In other words, the update rule of the Hopfield model causes this energy function to decrease.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates In other words, the update rule of the Hopfield model causes this energy function to decrease

Reference 84

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.524461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.245856Z digest=sha256:2ccb501ef3f0d5d1422d87dbc73f6e8f7fbd55c1e08ed26f4f8f63d27f20069e

Observation 3bea87a1-d2e6-4bc7-858a-4e2e2ce21a60 · outbound

This paper cites Each cell experiences a landscape that is biased towards one fate or another by its neighboring cells.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Each cell experiences a landscape that is biased towards one fate or another by its neighboring cells

Reference 85

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.511526Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.249945Z digest=sha256:cfe11672fa2b7e9a998403a066d4340995bbfcc4a0ddf6e5cf8c3a63caf5a1e3

Observation be3f5f38-30b1-4f8b-bd25-8231c39d4b32 · outbound

This paper cites The values for the signaling parameters (k, f) were varied as follows.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates The values for the signaling parameters (k, f) were varied as follows

Reference 86

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.498671Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.253778Z digest=sha256:09630528e713eab0c5685bc0573a914107705de395f8ccf82f6df6761b89cf96

Observation e5ace226-12af-45c9-9d80-8daa8cc988bc · outbound

This paper cites For the modern Hopfield network to converge to the correct pattern, it is necessary that the temperature is low enough such thate β ≫P, wherePis the number of stored patterns.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates For the modern Hopfield network to converge to the correct pattern, it is necessary that the temperature is low enough such thate β ≫P, wherePis the number of stored patterns

Reference 87

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.485223Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.257539Z digest=sha256:b75d00d11dd8c81db6ddeca0e19cc60f0bcc3fcbc1d17939f452034050f4100a

Observation 1536a3af-98f2-42e7-ba32-ce54128ca806 · outbound

This paper cites The simulations were initiated at the initial attractor state with noise added to the gene expression:x i(t= 0) =ξ 0i +z i.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates The simulations were initiated at the initial attractor state with noise added to the gene expression:x i(t= 0) =ξ 0i +z i

Reference 88

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.471860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.261556Z digest=sha256:3b05021448c9007ac15a6209ac85ac75a2f4ae481ff378cddaf6e2f5f7779aaf

Observation 2dad4dc9-ee74-4df5-ba1c-dde32c962f51 · outbound

This paper cites However, this does not reflect biological reality.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates However, this does not reflect biological reality

Reference 89

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.457776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.265425Z digest=sha256:41b821e07c0a5ed452cd00f3c314154e5a29fdee016f5b8f5adfd7afd8a6f966

Observation 4d763ea7-2ba2-4962-af84-d50f21402b5a · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 90

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.443962Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.269316Z digest=sha256:696e2b63ec8fc4f49b896bfc948919b49ea8e4256147a9a9bf9418ab847b9f6f

Observation d0321034-7d3a-42b2-b692-c35a987dcbf7 · outbound

This paper cites S´ aez, R.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates S´ aez, R

Reference 91

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.430058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.273118Z digest=sha256:ef06c4e6329d1b9a8403657012d89dcf744aa099770aa467b598b7ab42b2490f

Observation 204c7b2c-5231-4fc9-801a-acd51891e03c · outbound

This paper cites Kanter and H.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Kanter and H

Reference 92

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.414756Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.276987Z digest=sha256:75b1ce394b2855c3a0dc649c6800ee4ad30160414e5f73d96172a86d12ff50e0

Observation ba372104-5cd4-45b0-ad96-a6b8e81d6a9e · outbound

This paper cites Chaudhry, J.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Chaudhry, J

Reference 93

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T10:52:49.400678Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.280753Z digest=sha256:796a71b5be9029c661f5079f373ce16a34bc6775b46fb4d31cbc3deea55a026d

Observation 17d6d8ba-7fb6-4fa0-be29-7e93b5303573 · outbound

This paper cites Large Associative Memory Problem in Neurobiology and Machine Learning.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Large Associative Memory Problem in Neurobiology and Machine Learning

Reference 94

Resolution
unresolved
no resolver link, observed 2026-08-07T10:52:49.284365Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T10:52:49.284365Z digest=sha256:dfd8f31c4aeb9cc194dfc8d8a49d923ea2b5e5ae6b5d05e9cfad58273ab83cea

Observation e1a077cd-091f-4fbe-a82e-bffe4efd9c3e · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 95

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.386594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.288265Z digest=sha256:e0d1fb0a3d72319a436979daa8d248a6a77869107140d5601ff93cfbc73caa86

Observation c58911cb-b2a7-4c4f-b48b-08ef607358a9 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 96

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.372852Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.292048Z digest=sha256:73b2c85a623cf9f485bbae34552aac9376c3ff73f7c80b382ded862aba07832c

Observation 88e26a87-6b66-4470-b137-a8ca3c613ff8 · outbound

This paper cites an unresolved cited work.

Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates Unresolved cited work

Reference 97

Resolution
unresolved
raw_fallback, observed 2026-08-07T10:52:49.358987Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

source=pdf_text observed=2026-08-07T10:52:49.295978Z digest=sha256:d166cc879430910693f65942692e811eedfaac10bc0ca3572cfe38701c8d38a0

Pith citing papers

Observation c361895a-6780-4b36-b8de-5fc8de1a35e9 · inbound

Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees cites this paper.

Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees Collective gene dynamics leave signatures of decision landscapes in cell fate coordinates

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-04T08:55:58.122334Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-04T08:55:58.122334Z digest=sha256:be27bd7dfd381f18e96dff3a7f02ad34f6351a1835c4c4293590361cb4e0a069