Paper Citation Record · LEDGER

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme

As of 21 August 2026, this Paper Citation Record lists 63 of 63 outbound references and 1 inbound Pith citation observation for arXiv:2505.05782.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.05782 v1

Coverage vector

measured 63 of 63 reference resolution

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One-hop event checks from named stored sources.

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measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-05-20T05:10:39.704924Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-20T05:13:03.490540Z

Reference resolution

63 of 63 outbound references displayed

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External citation measurements

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Outbound references

Observation 033cc10c-43e7-4e13-a2af-be16c76148b2 · outbound

This paper cites Thoughts on how to think (and talk) about RNA structure,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Thoughts on how to think (and talk) about RNA structure,

Reference 1

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Observation 93cd2cd0-3c91-4ec0-ade9-b57bab4d3949 · outbound

This paper cites Tailor made: the art of therapeutic mRNA design,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Tailor made: the art of therapeutic mRNA design,

Reference 2

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This paper cites mRNA-based therapeutics: powerful and versatile tools to combat diseases,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme mRNA-based therapeutics: powerful and versatile tools to combat diseases,

Reference 3

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Observation f15d3518-dcff-4f9c-9a98-97d7013a399f · outbound

This paper cites Predicting rna structures and functions by artificial intelligence,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Predicting rna structures and functions by artificial intelligence,

Reference 4

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Observation 3fa9b3df-14e3-4a0c-b382-f8f1539e6f98 · outbound

This paper cites RNA pseudoknot prediction in energy-based models,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme RNA pseudoknot prediction in energy-based models,

Reference 5

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Observation 3f0ca3c1-a876-4839-b9b6-6a402806dde5 · outbound

This paper cites Computer prediction of RNA structure,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Computer prediction of RNA structure,

Reference 6

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Observation 777e95f1-0599-42f5-970a-ed2cde6d7d0e · outbound

This paper cites Mfold web server for nucleic acid folding and hybridization prediction,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Mfold web server for nucleic acid folding and hybridization prediction,

Reference 7

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Observation 949cb95a-e3ca-49b8-917e-7824c66e93f8 · outbound

This paper cites RNA structures and folding: from conventional to new issues in structure predictions,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme RNA structures and folding: from conventional to new issues in structure predictions,

Reference 8

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Observation cef63c83-ee63-46ce-9437-9013707a342d · outbound

This paper cites Infernal 1.1: 100-fold faster RNA homology searches,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Infernal 1.1: 100-fold faster RNA homology searches,

Reference 9

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Observation 55b6fec4-77fd-46c5-aeb7-5f0493cdcb0a · outbound

This paper cites Rich parame- terization improves RNA structure prediction,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Rich parame- terization improves RNA structure prediction,

Reference 10

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Observation f9d92d31-be14-4f92-8c48-11ba949ab84e · outbound

This paper cites mrna secondary structure prediction using utility-scale quantum computers,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme mrna secondary structure prediction using utility-scale quantum computers,

Reference 11

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Observation 3de4a1b7-7ed7-48ee-ba06-428d8654f2b8 · outbound

This paper cites Advances in RNA secondary structure prediction and RNA modifications: Methods, data, and applications.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Advances in RNA secondary structure prediction and RNA modifications: Methods, data, and applications

Reference 12

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This paper cites Provable bounds for noise-free ex- pectation values computed from noisy samples,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Provable bounds for noise-free ex- pectation values computed from noisy samples,

Reference 13

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This paper cites Benchmarking digital quantum simulations above hundreds of qubits using quantum critical dynamics.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Benchmarking digital quantum simulations above hundreds of qubits using quantum critical dynamics

Reference 14

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Observation 0ff9b9ad-5109-4454-a18a-dc50c53ca07e · outbound

This paper cites Large-scale quantum approximate opti- mization on nonplanar graphs with machine learning noise mitigation,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Large-scale quantum approximate opti- mization on nonplanar graphs with machine learning noise mitigation,

Reference 15

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Observation 83e54d3d-4a19-44fb-90c3-50918d560b6e · outbound

This paper cites Integrated error-suppressed pipeline for quantum optimization of nontrivial binary combinatorial optimization problems on gate-model hardware at the 156-qubit scale.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Integrated error-suppressed pipeline for quantum optimization of nontrivial binary combinatorial optimization problems on gate-model hardware at the 156-qubit scale

Reference 16

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Observation f367f99f-9b94-41cc-964d-da4ea0685bc3 · outbound

This paper cites Bias-Field Digitized Counterdiabatic Quantum Algorithm for Higher-Order Binary Optimization.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Bias-Field Digitized Counterdiabatic Quantum Algorithm for Higher-Order Binary Optimization

Reference 17

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Observation 77d39547-0ac1-4a88-bea0-bf3ac4e1c15c · outbound

This paper cites Scaling the Variational Quantum Eigensolver for Dynamic Portfolio Optimization.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Scaling the Variational Quantum Eigensolver for Dynamic Portfolio Optimization

Reference 18

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Observation c2b27dfe-975d-49d8-af83-b75a6f9ae874 · outbound

This paper cites Bias-field digitized counterdiabatic quantum optimization.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Bias-field digitized counterdiabatic quantum optimization

Reference 19

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Observation a711d1ce-4e5b-4b45-9be7-f721ecf6ab69 · outbound

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Im- proving quantum approximate optimization by noise-directed adaptive remapping,

Reference 20

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Observation 6e9bc568-fb9a-44b8-bbcf-91b90e57fc02 · outbound

This paper cites Implementing transferable annealing protocols for combinatorial opti- mization on neutral-atom quantum processors: A case study on smart charging of electric vehicles,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Implementing transferable annealing protocols for combinatorial opti- mization on neutral-atom quantum processors: A case study on smart charging of electric vehicles,

Reference 21

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Observation 2660270d-86c7-4fb2-995e-6e62a6a7555a · outbound

This paper cites Training variational quantum algorithms is np-hard,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Training variational quantum algorithms is np-hard,

Reference 22

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This paper cites Non- trivial symmetries in quantum landscapes and their resilience to quantum noise,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Non- trivial symmetries in quantum landscapes and their resilience to quantum noise,

Reference 23

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This paper cites Quantum variational algorithms are swamped with traps,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Quantum variational algorithms are swamped with traps,

Reference 24

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Observation 5f01d421-2458-4f46-a915-05121de3ae94 · outbound

This paper cites Diagnosing barren plateaus with tools from quantum optimal control,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Diagnosing barren plateaus with tools from quantum optimal control,

Reference 25

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Barren plateaus in quantum neural network training landscapes,

Reference 26

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Barren Plateaus in Variational Quantum Computing

Reference 27

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Does provable absence of barren plateaus imply classical simulability,

Reference 28

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Observation c917ff74-6a8b-4afe-add7-4843a7d3e6ac · outbound

This paper cites Circuit depth versus energy in topologically ordered systems.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Circuit depth versus energy in topologically ordered systems

Reference 29

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This paper cites Chemistry Beyond the Scale of Exact Diagonalization on a Quantum-Centric Supercomputer.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Chemistry Beyond the Scale of Exact Diagonalization on a Quantum-Centric Supercomputer

Reference 30

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Accurate quantum-centric simulations of supramolecular interactions

Reference 31

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Improving variational quantum optimization using cvar,

Reference 32

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme The density-matrix renormalization group in the age of matrix product states,

Reference 33

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Tensor network quantum simulator with step-dependent parallelization,

Reference 34

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme A practical introduction to tensor networks: Matrix product states and projected entangled pair states,

Reference 35

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme What limits the simulation of quantum computers?

Reference 36

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Density-matrix renormalization group algorithm for sim- ulating quantum circuits with a finite fidelity,

Reference 37

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Permutational Quantum Computing

Reference 38

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Quantum Complexity: restrictions on algorithms and architectures

Reference 39

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Classical simulation of commuting quantum computations implies collapse of the polynomial hierarchy,

Reference 40

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Average-case complexity versus approximate simulation of commuting quantum com- putations,

Reference 41

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This paper cites Improved separation between quantum and classical computers for sampling and functional tasks.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Improved separation between quantum and classical computers for sampling and functional tasks

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Rajakumar, J

Reference 43

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme IQPopt: Fast optimization of instantaneous quantum polynomial circuits in JAX

Reference 44

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This paper cites Train on classical, deploy on quantum: scaling generative quantum machine learning to a thousand qubits,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Train on classical, deploy on quantum: scaling generative quantum machine learning to a thousand qubits,

Reference 45

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Gusfield, Integer Linear Programming in Computational and Systems Biology: An Entry-Level Text and Course

Reference 46

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme A Tutorial on Formulating and Using QUBO Models

Reference 47

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This paper cites NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure,

Reference 48

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Qiskit: An open-source framework for quantum computing,

Reference 49

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Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Optimizing the spin reversal transform on the d-wave 2000q,

Reference 50

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Observation 27c0ced3-4f8b-41b4-ab63-eeec2c64d926 · outbound

This paper cites Optimizing embedding-related quantum annealing parameters for reducing hardware bias,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Optimizing embedding-related quantum annealing parameters for reducing hardware bias,

Reference 51

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This paper cites Sequential minimal optimiza- tion for quantum-classical hybrid algorithms,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Sequential minimal optimiza- tion for quantum-classical hybrid algorithms,

Reference 52

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Observation be2ca07d-4b71-45a1-a341-327f08501ccd · outbound

This paper cites Evaluating the impact of noise on the performance of the Variational Quantum Eigensolver.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Evaluating the impact of noise on the performance of the Variational Quantum Eigensolver

Reference 53

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.668410Z

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Observation 14b8a6a3-67c4-4fd7-b7e2-0d94a7aa703a · outbound

This paper cites Towards large-scale quantum optimiza- tion solvers with few qubits,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Towards large-scale quantum optimiza- tion solvers with few qubits,

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:03:26.500943Z

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Observation 08082fd2-ea82-4989-9fc1-8114cf43fddb · outbound

This paper cites Glover and M.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Glover and M

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:03:26.483889Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation c900927b-7970-4d6b-90fd-8bd47444e865 · outbound

This paper cites Finitely correlated states on quantum spin chains,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Finitely correlated states on quantum spin chains,

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:03:26.465782Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 9eb730cc-b297-4734-9a5a-baab4463f3f7 · outbound

This paper cites Thermodynamic limit of density matrix renormalization,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Thermodynamic limit of density matrix renormalization,

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:03:26.446302Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation 91feee64-e5a2-433c-84f4-63ff6a57d810 · outbound

This paper cites Efficient classical simulation of slightly entangled quantum computations,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Efficient classical simulation of slightly entangled quantum computations,

Reference 58

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.694693Z

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Observation 8282880d-327d-427b-b1e5-5604a88c29f4 · outbound

This paper cites Guidable local hamiltonian problems with implications to heuristic ansatz state preparation and the quantum pcp conjecture,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Guidable local hamiltonian problems with implications to heuristic ansatz state preparation and the quantum pcp conjecture,

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:03:26.413907Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

Observation eb8e41df-a2a5-4a7d-bd64-3db455731987 · outbound

This paper cites Non-zero noise extrapolation: accurately simulating noisy quantum circuits with tensor networks,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Non-zero noise extrapolation: accurately simulating noisy quantum circuits with tensor networks,

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.705804Z

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Observation 125a8eff-a1bb-4a38-b02c-2a431373e602 · outbound

This paper cites Simulating quantum computers with probabilistic methods.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Simulating quantum computers with probabilistic methods

Reference 61

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.710568Z

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Observation e0f894a7-61ae-47b6-ae62-716908099648 · outbound

This paper cites Quantum Algorithms for Fixed Qubit Architectures.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Quantum Algorithms for Fixed Qubit Architectures

Reference 62

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.716301Z

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Observation 1d20835c-dc80-48b3-82e1-e0d31543578d · outbound

This paper cites Quantum-enhanced markov chain monte carlo,.

Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme Quantum-enhanced markov chain monte carlo,

Reference 63

Resolution: unresolved; no resolver link, observed 2026-08-15T23:03:25.722094Z

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Pith citing papers

Observation a12d022a-e0eb-4294-9d80-74c19e02dbaf · inbound

Pauli Correlation Encoding for mRNA Secondary Structure Prediction: Problem-Aware Decoding for Dense-Constraint QUBOs cites this paper.

Pauli Correlation Encoding for mRNA Secondary Structure Prediction: Problem-Aware Decoding for Dense-Constraint QUBOs Towards secondary structure prediction of longer mRNA sequences using a quantum-centric optimization scheme

Reference 3

Resolution: verified exact; arxiv_id, observed 2026-05-20T05:13:03.492424Z

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No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.