Paper Citation Record · LEDGER

Scalable Autoregressive 3D Molecule Generation

As of 17 August 2026, this Paper Citation Record lists 88 of 88 outbound references and 5 inbound Pith citation observations for arXiv:2505.13791.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.13791 v2

Coverage vector

measured 88 of 88 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T20:16:06.532164Z

measured 93 of 93 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 5 of 5 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T07:22:12.446051Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T20:47:22.987838Z

Reference resolution

88 of 88 outbound references displayed

verified exact3
verified fuzzy13
unresolved72
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 1d0f07df-b07a-4de9-9e86-84b0131318a7 · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

Scalable Autoregressive 3D Molecule Generation Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.231549Z

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Observation a9586fac-b4c4-4acd-b288-a3b62f46f05f · outbound

This paper cites De novo design of protein structure and function with rfdiffusion.

Scalable Autoregressive 3D Molecule Generation De novo design of protein structure and function with rfdiffusion

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.235346Z

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Observation 1f5ae58f-ee3c-4e8b-bcc7-28a6d16c898d · outbound

This paper cites A generative model for inorganic materials design.

Scalable Autoregressive 3D Molecule Generation A generative model for inorganic materials design

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.238528Z

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Observation 1a1c5109-770b-4e48-acbd-4dd942152091 · outbound

This paper cites Equivariant diffusion for molecule generation in 3d.

Scalable Autoregressive 3D Molecule Generation Equivariant diffusion for molecule generation in 3d

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.241812Z

Source-reported events for the cited work

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Observation c6353a9b-5154-4537-a01e-18afb5b6aaee · outbound

This paper cites Equivariant flow matching with hybrid probability transport for 3d molecule generation.

Scalable Autoregressive 3D Molecule Generation Equivariant flow matching with hybrid probability transport for 3d molecule generation

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.244604Z

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Observation 260e47b1-1aca-497e-84d7-a9af27dc72e2 · outbound

This paper cites SymDiff: Equivariant Diffusion via Stochastic Symmetrisation.

Scalable Autoregressive 3D Molecule Generation SymDiff: Equivariant Diffusion via Stochastic Symmetrisation

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.247601Z

Source-reported events for the cited work

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Observation a75aa89f-bb44-4f6b-a0c7-f7a1c6cd0d6b · outbound

This paper cites All-atom Diffusion Transformers: Unified generative modelling of molecules and materials.

Scalable Autoregressive 3D Molecule Generation All-atom Diffusion Transformers: Unified generative modelling of molecules and materials

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.251020Z

Source-reported events for the cited work

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Observation 3304b399-7ab0-4802-bc82-de22831f7b4e · outbound

This paper cites Symmetry-adapted generation of 3d point sets for the targeted discovery of molecules.

Scalable Autoregressive 3D Molecule Generation Symmetry-adapted generation of 3d point sets for the targeted discovery of molecules

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.254555Z

Source-reported events for the cited work

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Observation bb4190d6-219e-4716-bfe4-7c2c371bc2d0 · outbound

This paper cites An autoregressive flow model for 3d molecular geometry generation from scratch.

Scalable Autoregressive 3D Molecule Generation An autoregressive flow model for 3d molecular geometry generation from scratch

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.257917Z

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Observation 9821842a-559f-49cb-ba65-27752a002e3b · outbound

This paper cites Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for 3D Molecule Generation.

Scalable Autoregressive 3D Molecule Generation Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for 3D Molecule Generation

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.261483Z

Source-reported events for the cited work

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Observation 0935c2db-6f10-4df8-a9ee-cdb90675f9ca · outbound

This paper cites Language models can generate molecules, materials, and protein binding sites directly in three dimensions as XYZ, CIF, and PDB files.

Scalable Autoregressive 3D Molecule Generation Language models can generate molecules, materials, and protein binding sites directly in three dimensions as XYZ, CIF, and PDB files

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.265206Z

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Observation 7c594657-0017-49f1-bb2f-a46ff780d984 · outbound

This paper cites Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates.

Scalable Autoregressive 3D Molecule Generation Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates

Reference 12

Resolution: verified exact; local_arxiv, observed 2026-08-15T20:16:06.984155Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 20d3fb56-0549-4b7d-b752-5cdd4ecdf6b8 · outbound

This paper cites Autoregressive Image Generation without Vector Quantization.

Scalable Autoregressive 3D Molecule Generation Autoregressive Image Generation without Vector Quantization

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.272362Z

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Observation 6b0f0ec7-4c31-4eb0-b598-7724c6a15006 · outbound

This paper cites E (n) equivariant normalizing flows.

Scalable Autoregressive 3D Molecule Generation E (n) equivariant normalizing flows

Reference 14

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.275889Z

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Observation db24c4d1-6394-4c96-ae3d-21fc9868e992 · outbound

This paper cites Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks.

Scalable Autoregressive 3D Molecule Generation Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.279088Z

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Observation b6f77226-b518-416a-83b7-6d65eb4d92cb · outbound

This paper cites Geometric latent diffusion models for 3d molecule generation.

Scalable Autoregressive 3D Molecule Generation Geometric latent diffusion models for 3d molecule generation

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.282529Z

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Observation 072c6149-b57e-4c59-9130-25a66b151368 · outbound

This paper cites Geometric Representation Condition Improves Equivariant Molecule Generation.

Scalable Autoregressive 3D Molecule Generation Geometric Representation Condition Improves Equivariant Molecule Generation

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.285927Z

Source-reported events for the cited work

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Observation 387c7ecd-7da5-48b5-ad7e-6bea4ebbfaa7 · outbound

This paper cites Accelerating 3D Molecule Generation via Jointly Geometric Optimal Transport.

Scalable Autoregressive 3D Molecule Generation Accelerating 3D Molecule Generation via Jointly Geometric Optimal Transport

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.289647Z

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Observation de895c9c-895a-449f-a36e-9e02b67fe910 · outbound

This paper cites 3d molecule generation by denoising voxel grids.

Scalable Autoregressive 3D Molecule Generation 3d molecule generation by denoising voxel grids

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.293301Z

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Observation cd71ed92-3994-4e2e-8459-231cd30fa10c · outbound

This paper cites Score-based 3D molecule generation with neural fields.

Scalable Autoregressive 3D Molecule Generation Score-based 3D molecule generation with neural fields

Reference 20

Resolution: verified exact; local_arxiv, observed 2026-08-15T20:16:06.925067Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 13b0f162-b607-41ac-ace4-19b38c7ee2cd · outbound

This paper cites Generating 3 D molecules for target protein binding.

Scalable Autoregressive 3D Molecule Generation Generating 3 D molecules for target protein binding

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.410487Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 9b1c1963-7c5c-4d3f-8e39-a69cb69268cf · outbound

This paper cites Fine-Tuned Language Models Generate Stable Inorganic Materials as Text.

Scalable Autoregressive 3D Molecule Generation Fine-Tuned Language Models Generate Stable Inorganic Materials as Text

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.302943Z

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Observation 4b803682-ff31-47a1-88a0-2d39b189dcd6 · outbound

This paper cites BindGPT: A Scalable Framework for 3D Molecular Design via Language Modeling and Reinforcement Learning.

Scalable Autoregressive 3D Molecule Generation BindGPT: A Scalable Framework for 3D Molecular Design via Language Modeling and Reinforcement Learning

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.306319Z

Source-reported events for the cited work

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Observation a84c1ed4-03ab-469c-a699-b7e125e990ff · outbound

This paper cites Large language models are innate crystal structure generators.

Scalable Autoregressive 3D Molecule Generation Large language models are innate crystal structure generators

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.310160Z

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Observation d4844c98-5d6e-4c9a-87f1-52e3018c2d8e · outbound

This paper cites 3dsmiles-gpt: 3d molecular pocket-based generation with token-only large language model.

Scalable Autoregressive 3D Molecule Generation 3dsmiles-gpt: 3d molecular pocket-based generation with token-only large language model

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.397694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation d4e27062-8345-4d8a-ac86-e1fb2a66a046 · outbound

This paper cites Autoregressive denoising diffusion models for multivariate probabilistic time series forecasting.

Scalable Autoregressive 3D Molecule Generation Autoregressive denoising diffusion models for multivariate probabilistic time series forecasting

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.317924Z

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Observation f11cde99-722d-417c-9a63-7ce98ec565ab · outbound

This paper cites Diffusion Forcing: Next-token Prediction Meets Full-Sequence Diffusion.

Scalable Autoregressive 3D Molecule Generation Diffusion Forcing: Next-token Prediction Meets Full-Sequence Diffusion

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.320502Z

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Observation 076ae48b-189d-497e-b1cf-5042f4fdd4de · outbound

This paper cites JetFormer: An Autoregressive Generative Model of Raw Images and Text.

Scalable Autoregressive 3D Molecule Generation JetFormer: An Autoregressive Generative Model of Raw Images and Text

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.323307Z

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Observation cb1e4f2e-83ec-4e40-9cfa-94c4927e7a1b · outbound

This paper cites Trans-dimensional generative modeling via jump diffusion models.

Scalable Autoregressive 3D Molecule Generation Trans-dimensional generative modeling via jump diffusion models

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.377292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 4edd2aa5-1702-48be-892c-1d3776430dcd · outbound

This paper cites Fourier features let networks learn high frequency functions in low dimensional domains.

Scalable Autoregressive 3D Molecule Generation Fourier features let networks learn high frequency functions in low dimensional domains

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.329950Z

Source-reported events for the cited work

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Observation 6204eff9-7625-45cb-ad45-e3bae6bbdd16 · outbound

This paper cites Attention is all you need.

Scalable Autoregressive 3D Molecule Generation Attention is all you need

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.333223Z

Source-reported events for the cited work

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Observation fd83db96-8341-45a0-ac18-abd9b7bf455e · outbound

This paper cites Elucidating the design space of diffusion-based generative models.

Scalable Autoregressive 3D Molecule Generation Elucidating the design space of diffusion-based generative models

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.336314Z

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Observation 4ff76959-2bb6-4dc7-9c73-6ce459a3e536 · outbound

This paper cites Score-Based Generative Modeling through Stochastic Differential Equations.

Scalable Autoregressive 3D Molecule Generation Score-Based Generative Modeling through Stochastic Differential Equations

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.339392Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 04e0c366-c9ca-4806-ad09-cd3cdecc3e88 · outbound

This paper cites A connection between score matching and denoising autoencoders.

Scalable Autoregressive 3D Molecule Generation A connection between score matching and denoising autoencoders

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.342802Z

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Observation 6b4c277d-98d6-4231-9882-c2cee703f5d6 · outbound

This paper cites Tweedie’s formula and selection bias.

Scalable Autoregressive 3D Molecule Generation Tweedie’s formula and selection bias

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.346000Z

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Observation 86cdc231-c5c8-422f-ba4f-3b23ffa60860 · outbound

This paper cites FiLM: Visual Reasoning with a General Conditioning Layer.

Scalable Autoregressive 3D Molecule Generation FiLM: Visual Reasoning with a General Conditioning Layer

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.349211Z

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Observation 5c8b1a7f-8e4f-4ee4-ae09-716003f7adfb · outbound

This paper cites Scalable diffusion models with transformers.

Scalable Autoregressive 3D Molecule Generation Scalable diffusion models with transformers

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.352838Z

Source-reported events for the cited work

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Observation b0ba7d92-211b-4650-8b36-0ef67f9ff279 · outbound

This paper cites Deep Residual Learning for Image Recognition.

Scalable Autoregressive 3D Molecule Generation Deep Residual Learning for Image Recognition

Reference 38

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.356054Z

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Observation 14683bcd-0eb6-4ad3-b7fe-19c2bdcdf307 · outbound

This paper cites FlashAttention-2: Faster Attention with Better Parallelism and Work Partitioning.

Scalable Autoregressive 3D Molecule Generation FlashAttention-2: Faster Attention with Better Parallelism and Work Partitioning

Reference 39

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.359470Z

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Observation decbcab2-4f44-4e57-ab98-a81d610073ef · outbound

This paper cites Pytorch 2: Faster machine learning through dynamic python bytecode transformation and graph compilation.

Scalable Autoregressive 3D Molecule Generation Pytorch 2: Faster machine learning through dynamic python bytecode transformation and graph compilation

Reference 40

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.362808Z

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Observation d1e426c1-7f64-4afa-a0ed-402c559f0cb1 · outbound

This paper cites Bio2Token: All-atom tokenization of any biomolecular structure with Mamba.

Scalable Autoregressive 3D Molecule Generation Bio2Token: All-atom tokenization of any biomolecular structure with Mamba

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.366077Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 49c4c1d6-7992-4079-9270-b35f5d035edb · outbound

This paper cites Language models are unsupervised multitask learners.

Scalable Autoregressive 3D Molecule Generation Language models are unsupervised multitask learners

Reference 42

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.369890Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2ba6547c-0445-4938-8cff-aab413082129 · outbound

This paper cites karpathy/ nanoGPT , January 2025.

Scalable Autoregressive 3D Molecule Generation karpathy/ nanoGPT , January 2025

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.312762Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 021fde27-e295-424a-aa4b-78f8aeb76110 · outbound

This paper cites Palm: Scaling language modeling with pathways.

Scalable Autoregressive 3D Molecule Generation Palm: Scaling language modeling with pathways

Reference 44

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.376476Z

Source-reported events for the cited work

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Observation 530834bc-a8ab-44e6-8bf7-ad8bc82df586 · outbound

This paper cites Small-scale proxies for large-scale Transformer training instabilities.

Scalable Autoregressive 3D Molecule Generation Small-scale proxies for large-scale Transformer training instabilities

Reference 45

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.379756Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation caf5b11a-3ae6-4cbb-b282-6ace4d03240d · outbound

This paper cites Efficient Sequence Packing without Cross-contamination: Accelerating Large Language Models without Impacting Performance.

Scalable Autoregressive 3D Molecule Generation Efficient Sequence Packing without Cross-contamination: Accelerating Large Language Models without Impacting Performance

Reference 46

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.383092Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 760d0eb6-dcf7-4c19-8298-af75e8b5ea04 · outbound

This paper cites Neural ordinary differential equations.

Scalable Autoregressive 3D Molecule Generation Neural ordinary differential equations

Reference 47

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.386606Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 06fc45bf-c99f-46bc-a1f6-fff3c8848e16 · outbound

This paper cites A stochastic estimator of the trace of the influence matrix for laplacian smoothing splines.

Scalable Autoregressive 3D Molecule Generation A stochastic estimator of the trace of the influence matrix for laplacian smoothing splines

Reference 48

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.389990Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7e79f3f7-8e8c-4a46-b4f0-7b0ef6026886 · outbound

This paper cites Quantum chemistry structures and properties of 134 kilo molecules.

Scalable Autoregressive 3D Molecule Generation Quantum chemistry structures and properties of 134 kilo molecules

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.393203Z

Source-reported events for the cited work

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Observation 69096701-e909-47e7-8934-aca4d76324f8 · outbound

This paper cites GEOM , energy-annotated molecular conformations for property prediction and molecular generation.

Scalable Autoregressive 3D Molecule Generation GEOM , energy-annotated molecular conformations for property prediction and molecular generation

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.276858Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation f8564b81-7ba6-47f1-bff5-eb5d87b86ec8 · outbound

This paper cites E (n) equivariant graph neural networks.

Scalable Autoregressive 3D Molecule Generation E (n) equivariant graph neural networks

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.265308Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 5f65786d-9a5c-4063-8e6a-6eec6bb9b24e · outbound

This paper cites Denoising Diffusion Implicit Models.

Scalable Autoregressive 3D Molecule Generation Denoising Diffusion Implicit Models

Reference 52

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.402654Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation af63a694-048a-42c0-8322-48f207ccfd16 · outbound

This paper cites Dpm-solver: A fast ode solver for diffusion probabilistic model sampling in around 10 steps.

Scalable Autoregressive 3D Molecule Generation Dpm-solver: A fast ode solver for diffusion probabilistic model sampling in around 10 steps

Reference 53

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.406914Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3cf104c8-8fdc-47d9-9645-7008cd501944 · outbound

This paper cites Geometry-complete diffusion for 3d molecule generation and optimization.

Scalable Autoregressive 3D Molecule Generation Geometry-complete diffusion for 3d molecule generation and optimization

Reference 54

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.410562Z

Source-reported events for the cited work

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Observation 41b31eac-9498-4b11-be15-0e726f3cb43b · outbound

This paper cites Practical suggestions for better crystal structures.

Scalable Autoregressive 3D Molecule Generation Practical suggestions for better crystal structures

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.243035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation c816603d-06ec-4368-ab70-175faed1915c · outbound

This paper cites Olex2: a complete structure solution, refinement and analysis program.

Scalable Autoregressive 3D Molecule Generation Olex2: a complete structure solution, refinement and analysis program

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.232042Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation d2e8c08d-95e5-44b6-b570-d92a27f7f545 · outbound

This paper cites Open babel: An open chemical toolbox.

Scalable Autoregressive 3D Molecule Generation Open babel: An open chemical toolbox

Reference 57

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.418773Z

Source-reported events for the cited work

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Observation 48f2d414-32db-4985-82cb-ae268f329d64 · outbound

This paper cites Adding hydrogen atoms to molecular models via fragment superimposition.

Scalable Autoregressive 3D Molecule Generation Adding hydrogen atoms to molecular models via fragment superimposition

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.214549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation fb4e4dfa-ef86-4a31-831a-4a29e77fdc11 · outbound

This paper cites Diffdec: structure-aware scaffold decoration with an end-to-end diffusion model.

Scalable Autoregressive 3D Molecule Generation Diffdec: structure-aware scaffold decoration with an end-to-end diffusion model

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.203331Z

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No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 5bd493a4-4dfd-41f1-a01e-147c4dcc1b14 · outbound

This paper cites Transformer Language Models without Positional Encodings Still Learn Positional Information.

Scalable Autoregressive 3D Molecule Generation Transformer Language Models without Positional Encodings Still Learn Positional Information

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.430239Z

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Observation 5ef7f18c-42ae-41a3-bf82-a014efc87b2e · outbound

This paper cites The impact of positional encoding on length generalization in transformers.

Scalable Autoregressive 3D Molecule Generation The impact of positional encoding on length generalization in transformers

Reference 61

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.434031Z

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Observation 2b2074f2-5b5c-4fb4-b2b3-8a405af4caa8 · outbound

This paper cites Causal Language Modeling Can Elicit Search and Reasoning Capabilities on Logic Puzzles.

Scalable Autoregressive 3D Molecule Generation Causal Language Modeling Can Elicit Search and Reasoning Capabilities on Logic Puzzles

Reference 62

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.437468Z

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Observation d2ae7eab-f970-41e3-9e91-d3f830dcac9d · outbound

This paper cites Do large language models need sensory grounding for meaning and understanding.

Scalable Autoregressive 3D Molecule Generation Do large language models need sensory grounding for meaning and understanding

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.184481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation fdccb27a-928a-4e41-91e0-96d7dfeb58fa · outbound

This paper cites The pitfalls of next-token prediction.

Scalable Autoregressive 3D Molecule Generation The pitfalls of next-token prediction

Reference 64

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.444145Z

Source-reported events for the cited work

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Observation 30837235-cb0d-42ca-9ade-88520a05ef68 · outbound

This paper cites Train for the Worst, Plan for the Best: Understanding Token Ordering in Masked Diffusions.

Scalable Autoregressive 3D Molecule Generation Train for the Worst, Plan for the Best: Understanding Token Ordering in Masked Diffusions

Reference 65

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.447678Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9ccc8d39-4054-47a5-98af-68e1cc2730cd · outbound

This paper cites Chain-of-thought prompting elicits reasoning in large language models.

Scalable Autoregressive 3D Molecule Generation Chain-of-thought prompting elicits reasoning in large language models

Reference 66

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.451228Z

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Observation 595ffd92-e240-4a00-8183-a012c1727843 · outbound

This paper cites Training Large Language Models to Reason in a Continuous Latent Space.

Scalable Autoregressive 3D Molecule Generation Training Large Language Models to Reason in a Continuous Latent Space

Reference 67

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.454678Z

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Observation f3cec5c8-0801-421f-8742-61a93f61c1af · outbound

This paper cites Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning.

Scalable Autoregressive 3D Molecule Generation Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning

Reference 68

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.458233Z

Source-reported events for the cited work

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Observation c172ee21-733c-49a9-bf13-1b6b8f0d778a · outbound

This paper cites Equivariant flow matching.

Scalable Autoregressive 3D Molecule Generation Equivariant flow matching

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.161472Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 952233bb-4085-4d66-8f25-d297c30fe2bc · outbound

This paper cites Transferable Boltzmann Generators.

Scalable Autoregressive 3D Molecule Generation Transferable Boltzmann Generators

Reference 70

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.464784Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1d5bf2d8-95ab-49a4-b3e4-6a22e6a99f55 · outbound

This paper cites Scalable equilibrium sampling with sequential boltzmann generators.

Scalable Autoregressive 3D Molecule Generation Scalable equilibrium sampling with sequential boltzmann generators

Reference 71

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.468370Z

Source-reported events for the cited work

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Observation 714b591f-d18d-41b9-9018-34806296abba · outbound

This paper cites Dual use of artificial-intelligence-powered drug discovery.

Scalable Autoregressive 3D Molecule Generation Dual use of artificial-intelligence-powered drug discovery

Reference 72

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T20:16:07.150492Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 66cac4c0-bf0d-405c-a69b-c46e031fb806 · outbound

This paper cites Python reference manual, volume 111.

Scalable Autoregressive 3D Molecule Generation Python reference manual, volume 111

Reference 73

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.475064Z

Source-reported events for the cited work

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Observation 9b236d7e-0f49-400b-95a1-b9ff4744ffd2 · outbound

This paper cites Python for scientific computing.

Scalable Autoregressive 3D Molecule Generation Python for scientific computing

Reference 74

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.478751Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d06c662b-7694-4096-a36d-b501f07bd064 · outbound

This paper cites Py T orch: An imperative style, high-performance deep learning library.

Scalable Autoregressive 3D Molecule Generation Py T orch: An imperative style, high-performance deep learning library

Reference 75

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.481997Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8ab7c67e-4a6e-4858-916d-a52fce839413 · outbound

This paper cites PyTorch Lightning , March 2019.

Scalable Autoregressive 3D Molecule Generation PyTorch Lightning , March 2019

Reference 76

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.485136Z

Source-reported events for the cited work

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Observation 4967524a-3e25-44c5-bd23-f9ce8889bbda · outbound

This paper cites Scalfani, guillaume godin, Juuso Lehtivarjo, Rachel Walker, Axel Pahl, Francois Berenger, jasondbiggs, and strets123.

Scalable Autoregressive 3D Molecule Generation Scalfani, guillaume godin, Juuso Lehtivarjo, Rachel Walker, Axel Pahl, Francois Berenger, jasondbiggs, and strets123

Reference 77

Resolution: verified exact; doi, observed 2026-08-15T20:16:07.113303Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 04c2c7ca-69c8-49c9-a1e5-0ec9e5bbf500 · outbound

This paper cites 3Dmol .js: Molecular visualization with WebGL.

Scalable Autoregressive 3D Molecule Generation 3Dmol .js: Molecular visualization with WebGL

Reference 78

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.492903Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation acb68703-75fc-4a2c-9e27-3c7eb9174c0c · outbound

This paper cites Jupyter notebooks-a publishing format for reproducible computational workflows.

Scalable Autoregressive 3D Molecule Generation Jupyter notebooks-a publishing format for reproducible computational workflows

Reference 79

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.497203Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cc7ff275-7afc-475d-8c71-e63a8afe8170 · outbound

This paper cites Matplotlib: A 2d graphics environment.

Scalable Autoregressive 3D Molecule Generation Matplotlib: A 2d graphics environment

Reference 80

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.501257Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e2f6c824-9da2-4128-b3b9-f03cb804f9d4 · outbound

This paper cites Seaborn: statistical data visualization.

Scalable Autoregressive 3D Molecule Generation Seaborn: statistical data visualization

Reference 81

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.505644Z

Source-reported events for the cited work

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Observation 35c08b96-6e85-46b3-b6bd-77e429ddbeb6 · outbound

This paper cites Harris, K.

Scalable Autoregressive 3D Molecule Generation Harris, K

Reference 82

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.510362Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c418fb0f-4cca-41c4-9f18-ea22e1b72c00 · outbound

This paper cites Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright, St \'e fan J.

Scalable Autoregressive 3D Molecule Generation Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright, St \'e fan J

Reference 83

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.514302Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1d4e3f3a-dd0a-4b78-b6d3-c89d9f255b8c · outbound

This paper cites pandas-dev/pandas: Pandas.

Scalable Autoregressive 3D Molecule Generation pandas-dev/pandas: Pandas

Reference 84

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.517946Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 523b1b14-0a05-415d-8097-9c1eb7484bef · outbound

This paper cites Flex Attention: A Programming Model for Generating Optimized Attention Kernels.

Scalable Autoregressive 3D Molecule Generation Flex Attention: A Programming Model for Generating Optimized Attention Kernels

Reference 85

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.521729Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a7cf3856-7b3a-43dd-b342-07085e7dd17e · outbound

This paper cites Decoupled Weight Decay Regularization.

Scalable Autoregressive 3D Molecule Generation Decoupled Weight Decay Regularization

Reference 86

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.525752Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c0ee522c-1ae0-420d-9df1-ea9e5df2c81a · outbound

This paper cites Analyzing and improving the training dynamics of diffusion models.

Scalable Autoregressive 3D Molecule Generation Analyzing and improving the training dynamics of diffusion models

Reference 87

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.528942Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7ca4d52f-2697-4643-a690-1be18028a8d3 · outbound

This paper cites Universal structure conversion method for organic molecules: from atomic connectivity to three-dimensional geometry.

Scalable Autoregressive 3D Molecule Generation Universal structure conversion method for organic molecules: from atomic connectivity to three-dimensional geometry

Reference 88

Resolution: unresolved; no resolver link, observed 2026-08-15T20:16:06.532164Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation cf3130ce-338b-41f9-8855-e2f7143766be · inbound

InertialAR: Autoregressive 3D Molecule Generation with Inertial Frames cites this paper.

InertialAR: Autoregressive 3D Molecule Generation with Inertial Frames Scalable Autoregressive 3D Molecule Generation

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-04T07:22:12.446051Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e448c6c4-6868-463b-9078-648370a702d6 · inbound

NEAT: Neighborhood-Guided, Efficient, Autoregressive Set Transformer for 3D Molecular Generation cites this paper.

NEAT: Neighborhood-Guided, Efficient, Autoregressive Set Transformer for 3D Molecular Generation Scalable Autoregressive 3D Molecule Generation

Reference 4

Resolution: verified exact; arxiv_id, observed 2026-05-17T00:23:44.747044Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 77ab49d5-71c1-463c-a6ff-92dd8d254902 · inbound

Generative Molecular Morphing for Flexible-Size Design via Unbalanced Optimal Transport cites this paper.

Generative Molecular Morphing for Flexible-Size Design via Unbalanced Optimal Transport Scalable Autoregressive 3D Molecule Generation

Reference 47

Resolution: metadata mismatch; arxiv_id, observed 2026-07-02T16:17:09.035949Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation ede9622c-c29f-4425-b614-3cb2be15a05a · inbound

De novo molecular generation with optical property preconditioning at the token level cites this paper.

De novo molecular generation with optical property preconditioning at the token level Scalable Autoregressive 3D Molecule Generation

Reference 14

Resolution: metadata mismatch; arxiv_id, observed 2026-07-02T20:47:22.989309Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

Observation 94cf721c-6b87-4d2e-afde-b273d4cb69d7 · inbound

Atomic Design Transformer: Scaffold-Conditioned 3D Molecule Generation via xTB-Reward Reinforcement Learning cites this paper.

Atomic Design Transformer: Scaffold-Conditioned 3D Molecule Generation via xTB-Reward Reinforcement Learning Scalable Autoregressive 3D Molecule Generation

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-01T22:02:28.332204Z

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Unavailable: canonical work link unavailable.