Paper Citation Record · LEDGER

Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

As of 7 August 2026, this Paper Citation Record lists 0 of 0 outbound references and 12 inbound Pith citation observations for arXiv:2405.15489.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2405.15489 v1

Coverage vector

measured 0 of 0 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links

measured 12 of 12 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 12 of 12 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-06T18:00:53.109882Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T07:06:44.173513Z

Reference resolution

0 of 0 outbound references displayed

verified exact0
verified fuzzy0
unresolved0
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

No outbound reference observations are available for this paper version.

Pith citing papers

Observation 90dca2a9-01b9-451d-bd83-dd79472d3fee · inbound

La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching cites this paper.

La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-06T18:00:53.109882Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 82b0f6d2-c433-43df-b9cc-08609c1eb70a · inbound

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design cites this paper.

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-06T13:45:52.291369Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b1b54801-a666-4398-8830-15c7064e63fd · inbound

Calibrating Generative Models to Distributional Constraints cites this paper.

Calibrating Generative Models to Distributional Constraints Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 43

Resolution: unresolved; no resolver link, observed 2026-08-04T10:27:59.764208Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6d2d6ea5-b322-4686-8a77-55665cd08515 · inbound

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens cites this paper.

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-03T16:07:37.519040Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8ef34458-a496-4233-b15c-95d96f173ae9 · inbound

Protein Autoregressive Modeling via Multiscale Structure Generation cites this paper.

Protein Autoregressive Modeling via Multiscale Structure Generation Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 32

Resolution: verified exact; arxiv_id, observed 2026-05-21T13:24:11.278386Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 3883330b-a78d-4dc0-9747-4c6009a98ba8 · inbound

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators cites this paper.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-03T01:06:03.892189Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 00361f37-3c47-4f4d-84e4-5339f85ae591 · inbound

ProHiFlo: Hierarchical Flow Matching with Functional Guidance for De Novo Protein Generation cites this paper.

ProHiFlo: Hierarchical Flow Matching with Functional Guidance for De Novo Protein Generation Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 26

Resolution: verified exact; arxiv_id, observed 2026-07-02T07:06:44.175012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9101eb03-5b1b-457f-8944-c8699f2095f4 · inbound

Design-CP: Context Parallelism for Design of Protein Nanoparticles cites this paper.

Design-CP: Context Parallelism for Design of Protein Nanoparticles Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 49

Resolution: unresolved; no resolver link, observed 2026-07-12T02:29:52.764344Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bac450ba-9740-487a-b9bc-a85d8cba6d8e · inbound

Variable-Length Generative Protein Design via Generalized Poisson Flow cites this paper.

Variable-Length Generative Protein Design via Generalized Poisson Flow Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 33

Resolution: unresolved; no resolver link, observed 2026-07-13T00:48:08.651522Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e7db3650-8a75-4b03-ae0d-ae885cb915b7 · inbound

Exploring the Alignment of Generation and Understanding in Protein Structure Modeling cites this paper.

Exploring the Alignment of Generation and Understanding in Protein Structure Modeling Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-02T05:05:22.747178Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0d175fcc-8ee8-4e45-9945-9d7fab519234 · inbound

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups cites this paper.

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 38

Resolution: unresolved; no resolver link, observed 2026-07-31T01:10:07.354761Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 560ed2b3-c499-4958-99ab-0cbddd83d6be · inbound

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups cites this paper.

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 38

Resolution: unresolved; no resolver link, observed 2026-08-03T01:48:11.320233Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.