OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking | Paper Citation Record

Observation a894723c-400a-4c86-b27a-88bcf9fdfa53 · outbound

This paper cites Molecular structure of nucleic acids: A structure for deoxyri- bose nucleic acid.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Molecular structure of nucleic acids: A structure for deoxyri- bose nucleic acid

Reference 1

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This paper cites Large models for genomics.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Large models for genomics

Reference 2

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This paper cites Why teachers should explore chatgpt’s potential.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Why teachers should explore chatgpt’s potential

Reference 3

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This paper cites The opportunities and challenges of chatgpt in education.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking The opportunities and challenges of chatgpt in education

Reference 4

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This paper cites Generative artificial intelligence in the metaverse era.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Generative artificial intelligence in the metaverse era

Reference 5

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This paper cites Beyond reality: The pivotal role of generative ai in the metaverse.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Beyond reality: The pivotal role of generative ai in the metaverse

Reference 6

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This paper cites Edelman and Mark Abraham.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Edelman and Mark Abraham

Reference 7

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This paper cites A review of chatgpt ai’s impact on several business sectors.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking A review of chatgpt ai’s impact on several business sectors

Reference 8

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This paper cites Transformers and genome language models.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Transformers and genome language models

Reference 9

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Observation 2b4f705c-d154-4820-a507-5a0ecb592787 · outbound

This paper cites Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome

Reference 10

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Observation 6da71cb3-f4aa-4b62-901a-ac15323f4a1d · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 11

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Observation b20029df-e6f5-493f-b3c4-32bcc65f1715 · outbound

This paper cites A foundational large language model for edible plant genomes.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking A foundational large language model for edible plant genomes

Reference 12

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Observation df8ae66a-6ffb-40cc-a82d-9b5c14c398ee · outbound

This paper cites Genomic benchmarks: a collection of datasets for genomic sequence classification.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Genomic benchmarks: a collection of datasets for genomic sequence classification

Reference 13

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Observation 4da9a8f2-245d-4786-80d0-f739e2289438 · outbound

This paper cites BEACON: Benchmark for Comprehensive RNA Tasks and Language Models.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

Reference 14

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Observation 3486bc1d-a1dd-4340-9013-92a8b73149ea · outbound

This paper cites BERT: pre-training of deep bidirectional transformers for language understanding.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking BERT: pre-training of deep bidirectional transformers for language understanding

Reference 15

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This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 16

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Observation 1921b3f1-3462-4a8f-80d5-3044c1a5ab6b · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 17

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This paper cites Fu, Tri Dao, Stephen Baccus, Yoshua Bengio, Stefano Ermon, and Christopher Ré.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Fu, Tri Dao, Stephen Baccus, Yoshua Bengio, Stefano Ermon, and Christopher Ré

Reference 18

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Observation 44cc6250-88af-409b-906d-f8f83baf24ff · outbound

This paper cites HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution

Reference 19

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This paper cites Sequence modeling and design from molecular to genome scale with evo.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Sequence modeling and design from molecular to genome scale with evo

Reference 20

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Observation b8ee6d03-6d8f-4746-892a-eda3efce490f · outbound

This paper cites Mamba: Linear-Time Sequence Modeling with Selective State Spaces.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Mamba: Linear-Time Sequence Modeling with Selective State Spaces

Reference 21

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This paper cites Caduceus: Bi-directional equivariant long-range DNA sequence modeling.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Caduceus: Bi-directional equivariant long-range DNA sequence modeling

Reference 22

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Observation 156cb652-380f-407a-86d9-522ca01963b9 · outbound

This paper cites Bridging Sequence-Structure Alignment in RNA Foundation Models.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Bridging Sequence-Structure Alignment in RNA Foundation Models

Reference 23

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Observation 5109cc0a-68f8-45a6-a940-165993e5ade3 · outbound

This paper cites Interpretable rna foundation model from unannotated data for highly accurate rna structure and function predictions.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Interpretable rna foundation model from unannotated data for highly accurate rna structure and function predictions

Reference 24

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Observation 8019c888-a1bc-4711-b13b-0e318cac8805 · outbound

This paper cites Turbofold ii: Rna structural alignment and secondary structure prediction informed by multiple homologs.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Turbofold ii: Rna structural alignment and secondary structure prediction informed by multiple homologs

Reference 25

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This paper cites bprna: large-scale automated annotation and analysis of rna secondary structure.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking bprna: large-scale automated annotation and analysis of rna secondary structure

Reference 26

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This paper cites How to benchmark rna secondary structure prediction accuracy.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking How to benchmark rna secondary structure prediction accuracy

Reference 27

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Observation 018d128d-746d-4cee-8872-fbb6d5444621 · outbound

This paper cites Rfam 14: expanded coverage of metagenomic, viral and microrna families.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Rfam 14: expanded coverage of metagenomic, viral and microrna families

Reference 28

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This paper cites Sars-cov-2 mrna vaccine design enabled by prototype pathogen preparedness.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Sars-cov-2 mrna vaccine design enabled by prototype pathogen preparedness

Reference 29

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This paper cites Self- supervised learning on millions of pre-mrna sequences improves sequence-based rna splicing prediction.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Self- supervised learning on millions of pre-mrna sequences improves sequence-based rna splicing prediction

Reference 30

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This paper cites Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Reference 31

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This paper cites Rna secondary structure prediction using deep learning with thermodynamic integration.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Rna secondary structure prediction using deep learning with thermodynamic integration

Reference 32

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This paper cites Multiple sequence alignment-based rna language model and its application to structural inference.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Multiple sequence alignment-based rna language model and its application to structural inference

Reference 33

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This paper cites The kipoi reposi- tory accelerates community exchange and reuse of predictive models for genomics.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking The kipoi reposi- tory accelerates community exchange and reuse of predictive models for genomics

Reference 34

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Observation 6b33c62f-becf-4d0b-9452-0b2b824e92e1 · outbound

This paper cites Rnabench: A comprehensive library for in silico rna modelling.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Rnabench: A comprehensive library for in silico rna modelling

Reference 35

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This paper cites GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Reference 36

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This paper cites Diverse genomic embedding benchmark for functional evaluation across the tree of life.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Diverse genomic embedding benchmark for functional evaluation across the tree of life

Reference 37

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This paper cites The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Reference 38

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This paper cites Proteingym: Large- scale benchmarks for protein fitness prediction and design.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Proteingym: Large- scale benchmarks for protein fitness prediction and design

Reference 39

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OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Flip: Benchmark tasks in fitness landscape inference for proteins

Reference 40

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This paper cites Peer: a comprehensive and multi-task benchmark for protein sequence understanding.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Peer: a comprehensive and multi-task benchmark for protein sequence understanding

Reference 41

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Observation 95ec401a-32c6-45cb-b76f-5fc0c919e5b1 · outbound

This paper cites Highly accurate protein structure predic- tion with AlphaFold.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Highly accurate protein structure predic- tion with AlphaFold

Reference 42

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This paper cites Protein complex prediction with alphafold-multimer.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Protein complex prediction with alphafold-multimer

Reference 43

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This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 44

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Observation 4197249c-c5a1-435c-b6fb-c1997741c33c · outbound

This paper cites Language models of protein sequences at the scale of evolution enable accurate structure prediction.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Language models of protein sequences at the scale of evolution enable accurate structure prediction

Reference 45

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This paper cites Davuluri.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Davuluri

Reference 46

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Observation 06851854-a3aa-47d2-b49e-8f645e8c09c6 · outbound

This paper cites The nucleotide transformer: Building and evaluating robust foundation models for human genomics.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking The nucleotide transformer: Building and evaluating robust foundation models for human genomics

Reference 47

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Observation dac8fe5d-09ec-4a73-80f2-d90584bcde52 · outbound

This paper cites Segmentnt: annotating the genome at single-nucleotide resolution with dna foundation models.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Segmentnt: annotating the genome at single-nucleotide resolution with dna foundation models

Reference 48

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Observation b8c59dda-ed30-4d35-b2df-44e75e4d5538 · outbound

This paper cites scbert as a large-scale pretrained deep language model for cell type annotation of single-cell rna-seq data.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking scbert as a large-scale pretrained deep language model for cell type annotation of single-cell rna-seq data

Reference 49

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Observation 2482b860-77f1-4b5b-b17f-e07a788c3344 · outbound

This paper cites Informative rna base embedding for rna structural alignment and clustering by deep representation learning.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Informative rna base embedding for rna structural alignment and clustering by deep representation learning

Reference 50

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Observation 163bd9ec-60d8-437f-b535-239dee63f002 · outbound

This paper cites Multi-purpose rna language modelling with motif-aware pretraining and type-guided fine-tuning.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Multi-purpose rna language modelling with motif-aware pretraining and type-guided fine-tuning

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:24.048841Z

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Observation 7ed97206-93de-4743-acd3-4e713b08e67e · outbound

This paper cites cdsbert-extending protein language models with codon awareness.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking cdsbert-extending protein language models with codon awareness

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:23.668658Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 39b31340-a8a8-49b0-b0ca-f2a5d195aa83 · outbound

This paper cites A 5’ utr language model for decoding untranslated regions of mrna and function predictions.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking A 5’ utr language model for decoding untranslated regions of mrna and function predictions

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:23.247172Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0f001386-77b9-4616-9862-f9259548c54c · outbound

This paper cites Deciphering 3’utr mediated gene regulation using interpretable deep representation learning.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Deciphering 3’utr mediated gene regulation using interpretable deep representation learning

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:22.961339Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ce1e2a12-234a-4219-ae8d-61d2147e6a8b · outbound

This paper cites Uni-rna: universal pre-trained models revolutionize rna research.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Uni-rna: universal pre-trained models revolutionize rna research

Reference 55

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:22.747289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 33ef68b4-5776-41d7-8862-13b26216af34 · outbound

This paper cites Chatnt: A multimodal conversational agent for dna, rna and protein tasks.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Chatnt: A multimodal conversational agent for dna, rna and protein tasks

Reference 56

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:22.535270Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b5bb5d31-653a-43d4-bd48-dcf0e23ad616 · outbound

This paper cites An interpretable rna foundation model for exploring functional rna motifs in plants.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking An interpretable rna foundation model for exploring functional rna motifs in plants

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:22.320356Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 13f1d677-4ead-4e45-8100-78ccde439827 · outbound

This paper cites Rna design rules from a massive open laboratory.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Rna design rules from a massive open laboratory

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:22.132906Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 37ad8907-751f-45cf-a77c-18e76524b50a · outbound

This paper cites Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:21.951267Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation f1d31d5b-fcdb-4993-8774-77688abf77ca · outbound

This paper cites Basic local alignment search tool.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Basic local alignment search tool

Reference 60

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:21.782423Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5b7fedfe-49b6-49cb-878b-90269081c05d · outbound

This paper cites Viennarna package 2.0.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Viennarna package 2.0

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:21.568305Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 200b7b2f-04d8-40db-9632-25ab57c78290 · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 62

Resolution: malformed identifier; raw_fallback, observed 2026-08-07T15:39:21.370906Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8bdeb87e-9b37-4574-8864-60459e840ac4 · outbound

This paper cites Ernie-rna: An rna language model with structure-enhanced representations.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Ernie-rna: An rna language model with structure-enhanced representations

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:21.157844Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c9093329-9b3b-4ede-963c-e2b4a141c9b4 · outbound

This paper cites Mp-rna: Unleashing multi-species rna foundation model via calibrated secondary structure prediction.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Mp-rna: Unleashing multi-species rna foundation model via calibrated secondary structure prediction

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:20.932592Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation cd7dad7c-43ef-459f-99ce-b1352b7cda32 · outbound

This paper cites Huber, Yue Wan, and Mile Šiki´c.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Huber, Yue Wan, and Mile Šiki´c

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:20.749825Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 56888824-d70a-4eff-874f-4abc8fc1e391 · outbound

This paper cites Mitigating risks from gene edit- ing and synthetic biology: Global governance priorities.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Mitigating risks from gene edit- ing and synthetic biology: Global governance priorities

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:20.521104Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation f2a52580-b4b4-4126-a3d6-6f01b55f348f · outbound

This paper cites Safety by design: Biosafety and biosecurity in the age of synthetic biology.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Safety by design: Biosafety and biosecurity in the age of synthetic biology

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:20.302151Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 38661151-4f90-4224-baf2-dd39ec11f8a0 · outbound

This paper cites The economic impact and functional applications of hu- man genetics and genomics, 2021.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking The economic impact and functional applications of hu- man genetics and genomics, 2021

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:20.071781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 04bb7c3d-389c-47fa-8694-0626330d22b4 · outbound

This paper cites Safety risks and ethical gover- nance of biomedical applications of synthetic biology.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Safety risks and ethical gover- nance of biomedical applications of synthetic biology

Reference 69

Resolution: metadata mismatch; raw_fallback, observed 2026-08-07T15:39:15.494899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 792e9182-838e-439b-8e2e-a408f62cd94a · outbound

This paper cites Genetic frontiers for conservation: An assessment of synthetic biology and biodiver- sity conservation.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Genetic frontiers for conservation: An assessment of synthetic biology and biodiver- sity conservation

Reference 70

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:19.902834Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 874cd0fa-96fe-461e-a0e1-825e2bc54610 · outbound

This paper cites Ethical framework on risk governance of synthetic biology.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Ethical framework on risk governance of synthetic biology

Reference 71

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:19.715860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c1b9b8eb-9da2-40df-82ff-8e0452be0d45 · outbound

This paper cites Genomic medicine on the frontier of precision medicine.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Genomic medicine on the frontier of precision medicine

Reference 72

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:19.571935Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 92c94d13-e568-410a-927f-a1d635a22f25 · outbound

This paper cites Innovations in genomics and big data analytics for personalized medicine and health care: A review.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Innovations in genomics and big data analytics for personalized medicine and health care: A review

Reference 73

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:19.368388Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 70a0465b-550c-4f44-895c-069a1747d332 · outbound

This paper cites Combining ai and crispr will be transformational.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Combining ai and crispr will be transformational

Reference 74

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:19.085198Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 38a4e5ca-73d6-4b45-96c8-1ccdc872d1ab · outbound

This paper cites Revolutionizing biological science: The synergy of genomics in agriculture.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Revolutionizing biological science: The synergy of genomics in agriculture

Reference 75

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:18.765637Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e2eccded-f139-400e-80ee-1b5e8c877298 · outbound

This paper cites • The abstract and/or introduction should clearly state the claims made, including the contributions made in the paper and important assumptions and limitations.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • The abstract and/or introduction should clearly state the claims made, including the contributions made in the paper and important assumptions and limitations

Reference 77

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:18.481773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4e516c88-bc1e-4ad9-8575-6956d49b21a1 · outbound

This paper cites Limitations.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Limitations

Reference 78

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:18.269738Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e64b0776-7c5e-4db4-9bbc-523aee8ffd37 · outbound

This paper cites • All the theorems, formulas, and proofs in the paper should be numbered and cross- referenced.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • All the theorems, formulas, and proofs in the paper should be numbered and cross- referenced

Reference 79

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:18.085524Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6679b3a9-0620-41ef-af9e-e97dcc462515 · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 80

Resolution: unresolved; raw_fallback, observed 2026-08-07T15:39:17.825839Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 30ffcf14-50e0-45ef-a882-7d8a0c12e9e0 · outbound

This paper cites • Please see the NeurIPS code and data submission guidelines ( https://nips.cc/ public/guides/CodeSubmissionPolicy) for more details.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • Please see the NeurIPS code and data submission guidelines ( https://nips.cc/ public/guides/CodeSubmissionPolicy) for more details

Reference 81

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:17.660465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b764035d-3048-4db8-adbb-48a230258b59 · outbound

This paper cites • The experimental setting should be presented in the core of the paper to a level of detail that is necessary to appreciate the results and make sense of them.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • The experimental setting should be presented in the core of the paper to a level of detail that is necessary to appreciate the results and make sense of them

Reference 82

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:17.474727Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation babc5dd5-f54e-4df4-ad5c-136f00657aa9 · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 83

Resolution: unresolved; raw_fallback, observed 2026-08-07T15:39:17.303441Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6e7dc585-0982-4951-87cd-2a4d496f5c17 · outbound

This paper cites • The paper should indicate the type of compute workers CPU or GPU, internal cluster, or cloud provider, including relevant memory and storage.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • The paper should indicate the type of compute workers CPU or GPU, internal cluster, or cloud provider, including relevant memory and storage

Reference 84

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:16.981833Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8a6bc2c8-0f63-4078-92a4-8fb0ff10a2f5 · outbound

This paper cites • If the authors answer No, they should explain the special circumstances that require a deviation from the Code of Ethics.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • If the authors answer No, they should explain the special circumstances that require a deviation from the Code of Ethics

Reference 85

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:16.700731Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 86b2c8c5-c7cb-40c4-a3d4-d8ba32a3910b · outbound

This paper cites • If the authors answer NA or No, they should explain why their work has no societal impact or why the paper does not address societal impact.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • If the authors answer NA or No, they should explain why their work has no societal impact or why the paper does not address societal impact

Reference 86

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:16.420620Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 34f10644-90fd-496a-8236-0b42a3329d88 · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 87

Resolution: unresolved; no resolver link, observed 2026-08-07T15:39:13.358530Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8757aa95-15f1-4b44-80d4-32da81bb552c · outbound

This paper cites • The authors should cite the original paper that produced the code package or dataset.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • The authors should cite the original paper that produced the code package or dataset

Reference 88

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:16.054745Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c10543c5-e669-4fdb-b981-23d5c5c057f5 · outbound

This paper cites • Researchers should communicate the details of the dataset/code/model as part of their submissions via structured templates.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • Researchers should communicate the details of the dataset/code/model as part of their submissions via structured templates

Reference 89

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T15:39:15.890305Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9126338f-b025-4ef9-b106-0017b34f5bd9 · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 90

Resolution: unresolved; no resolver link, observed 2026-08-07T15:39:13.622470Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 751a78f1-5672-463d-ae57-0d075b8b4036 · outbound

This paper cites • Depending on the country in which research is conducted, IRB approval (or equivalent) may be required for any human subjects research.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking • Depending on the country in which research is conducted, IRB approval (or equivalent) may be required for any human subjects research

Reference 91

Resolution: unresolved; no resolver link, observed 2026-08-07T15:39:13.717006Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3334bc1a-c925-4827-957c-a290b0de231b · outbound

This paper cites an unresolved cited work.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Unresolved cited work

Reference 92

Resolution: unresolved; raw_fallback, observed 2026-08-07T15:39:15.707610Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1de5b37e-e902-481d-868c-82e61eb46252 · outbound

This paper cites Cls” = classification, “Reg.

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking Cls” = classification, “Reg

Reference 2023

Resolution: verified exact; raw_fallback, observed 2026-08-07T15:39:15.293321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Coverage vector

Reference resolution

Outbound references

Pith citing papers