Paper Citation Record · LEDGER

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data

As of 9 August 2026, this Paper Citation Record lists 73 of 73 outbound references and 1 inbound Pith citation observation for arXiv:2506.10031.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.10031 v1

Coverage vector

measured 73 of 73 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T05:08:17.152547Z

measured 74 of 74 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-28T06:52:09.587293Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T07:36:44.988223Z

Reference resolution

73 of 73 outbound references displayed

verified exact13
verified fuzzy28
unresolved32
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 3fde4adc-81fa-49fb-a5ac-fe85486ea792 · outbound

This paper cites write newline.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data write newline

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:10.620099Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c927be09-2f15-4708-b226-74275a4cb4db · outbound

This paper cites VICReg: Variance-Invariance-Covariance Regularization for Self-Supervised Learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data VICReg: Variance-Invariance-Covariance Regularization for Self-Supervised Learning

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:25.109270Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 23927cd5-c621-4844-b0ca-de2c8c380eb8 · outbound

This paper cites The technological landscape and applications of single-cell multi-omics.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data The technological landscape and applications of single-cell multi-omics

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:10.722036Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b702e392-9137-44f1-9824-ec3d50340c77 · outbound

This paper cites A., Teichmann, S.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A., Teichmann, S

Reference 4

Resolution: verified exact; doi, observed 2026-08-07T05:08:19.263256Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 36ef5968-d42c-4d9c-850a-a543b6841c6d · outbound

This paper cites An empirical study on disentanglement of negative-free contrastive learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data An empirical study on disentanglement of negative-free contrastive learning

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:24.950193Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 51713070-6232-42b9-98ca-123003d4219c · outbound

This paper cites scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:10.874312Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ce470c7b-20e1-459e-9803-351bc7bbab49 · outbound

This paper cites Domain-specific batch normalization for unsupervised domain adaptation.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Domain-specific batch normalization for unsupervised domain adaptation

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:24.657216Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9738f2fa-e503-4ffb-b444-8cf73f5d9ffc · outbound

This paper cites A simple framework for contrastive learning of visual representations.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A simple framework for contrastive learning of visual representations

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:24.486180Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 1da6db61-fa1e-4c4e-b232-e920051ef384 · outbound

This paper cites Exploring Simple Siamese Representation Learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Exploring Simple Siamese Representation Learning

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.016529Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cea10580-758e-4393-83e5-4f50f762e531 · outbound

This paper cites A joint analysis of single cell transcriptomics and proteomics using transformer.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A joint analysis of single cell transcriptomics and proteomics using transformer

Reference 10

Resolution: verified exact; doi, observed 2026-08-07T05:08:19.107774Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 77168162-688c-49a0-ae8e-15f186d4e1f1 · outbound

This paper cites D., Xu, C., Jarvis, L.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data D., Xu, C., Jarvis, L

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.124226Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c1857466-bdb0-4aad-9830-b99965c62db2 · outbound

This paper cites scGPT: toward building a foundation model for single-cell multi-omics using generative AI.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data scGPT: toward building a foundation model for single-cell multi-omics using generative AI

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:24.170776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 67dac639-c758-409f-bf93-088efb0a901c · outbound

This paper cites BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.241324Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6b4c716f-af60-4fde-b312-70c9027e6c80 · outbound

This paper cites Bert: Pre-training of deep bidirectional transformers for language understanding.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Bert: Pre-training of deep bidirectional transformers for language understanding

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:23.924481Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 4efd37f4-2425-4a47-b48e-362ceb90d710 · outbound

This paper cites K., Kowalczyk, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data K., Kowalczyk, M

Reference 15

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.949856Z

Source-reported events for the cited work

correction dated 2020-04-27. Source: crossref record 10.1038/s41587-020-0534-z->10.1038/s41587-020-0465-8:correction, observed 2026-07-11T03:02:06.836427+00:00. This notice travels one citation hop only.

Observation af8f9b51-3e39-4e76-93b4-1e83929c4d88 · outbound

This paper cites With a Little Help from My Friends: Nearest-Neighbor Contrastive Learning of Visual Representations.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data With a Little Help from My Friends: Nearest-Neighbor Contrastive Learning of Visual Representations

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.405493Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 45ae8d69-e4f1-4bbb-a1bd-ba1dfec5adc0 · outbound

This paper cites M., Waldman, J., et al.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data M., Waldman, J., et al

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:23.684738Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 2698a9d8-34ea-4dd4-851a-e1979a98ec90 · outbound

This paper cites L., Streets, A., and Yosef, N.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data L., Streets, A., and Yosef, N

Reference 18

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.526720Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation df48cb61-2581-44ef-bd1e-20eccf7498fb · outbound

This paper cites A Cookbook of Self-Supervised Learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A Cookbook of Self-Supervised Learning

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.595096Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 11454aad-518f-41b1-95ad-df78aa0c98b1 · outbound

This paper cites C., Modi, H., Kampman, L., and Corces, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data C., Modi, H., Kampman, L., and Corces, M

Reference 20

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.795251Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation a5a349ac-0bbf-4523-950f-f8052932d691 · outbound

This paper cites Bootstrap your own latent-a new approach to self-supervised learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Bootstrap your own latent-a new approach to self-supervised learning

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:23.482487Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation e1b3b9ad-bcdd-4705-a56d-9d9713007051 · outbound

This paper cites Self-supervised contrastive learning for integrative single cell RNA-seq data analysis.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Self-supervised contrastive learning for integrative single cell RNA-seq data analysis

Reference 22

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.601257Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 18c09c55-1aae-4c3d-b7b9-c12c86cdc32d · outbound

This paper cites M., Zheng, S., Butler, A., Lee, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data M., Zheng, S., Butler, A., Lee, M

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.857643Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0631053f-e8b9-465b-9543-f007c1903391 · outbound

This paper cites H., Choudhary, S., Hoffman, P., et al.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data H., Choudhary, S., Hoffman, P., et al

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:11.920402Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation faade1ff-4d55-4994-9b56-5763131b714d · outbound

This paper cites Momentum contrast for unsupervised visual representation learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Momentum contrast for unsupervised visual representation learning

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:23.274452Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation ee0f782d-8128-4933-9a37-53774d6db359 · outbound

This paper cites D., Zhang, Y.-z., and Imoto, S.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data D., Zhang, Y.-z., and Imoto, S

Reference 26

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.428456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation f2fa9dbe-bfc5-4739-88c7-15ba814d1a23 · outbound

This paper cites C., Lance, C., Litinetskaya, A., Drost, F., Zappia, L., L \"u cken, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data C., Lance, C., Litinetskaya, A., Drost, F., Zappia, L., L \"u cken, M

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:23.074403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation d3353008-f539-47d8-90e4-818763b68c93 · outbound

This paper cites Teacher-Student Architecture for Knowledge Distillation: A Survey.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Teacher-Student Architecture for Knowledge Distillation: A Survey

Reference 28

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Source-reported events for the cited work

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Observation f1ec3568-e091-47e4-b25d-4903f1e60abc · outbound

This paper cites Understanding Dimensional Collapse in Contrastive Self-supervised Learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Understanding Dimensional Collapse in Contrastive Self-supervised Learning

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.897999Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation f1eb9d2b-9ead-4695-a082-7fdc6efc9667 · outbound

This paper cites C., Karkanias, J., Krasnow, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data C., Karkanias, J., Krasnow, M

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:12.414070Z

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Observation 0573d55c-33a3-4789-a3f3-d1687bb9bbfa · outbound

This paper cites Adam: A Method for Stochastic Optimization.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Adam: A Method for Stochastic Optimization

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:12.449460Z

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Observation 3c535319-f1fb-4d67-82fb-8c394af4f8eb · outbound

This paper cites a hnemann, D., K \.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data a hnemann, D., K \

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.710050Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 4d73219d-d9c1-44dc-84b6-38df7ac6f084 · outbound

This paper cites D., Burkhardt, D.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data D., Burkhardt, D

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.544858Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation aedddca0-704f-42cb-93d3-8f9d89bd3b8a · outbound

This paper cites scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration

Reference 34

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.247776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 1022da6d-6101-4872-bbab-d8fc70166c97 · outbound

This paper cites Single-Cell RNA-Seq Debiased Clustering via Batch Effect Disentanglement.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Single-Cell RNA-Seq Debiased Clustering via Batch Effect Disentanglement

Reference 35

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Observation 7eca97a2-bd46-4676-9236-f2ce1bf84c67 · outbound

This paper cites CAKE: a flexible self-supervised framework for enhancing cell visualization, clustering and rare cell identification.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data CAKE: a flexible self-supervised framework for enhancing cell visualization, clustering and rare cell identification

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.341269Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 447e638c-63f5-459d-a3b6-39ecae06a4a5 · outbound

This paper cites B., Jordan, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data B., Jordan, M

Reference 37

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Source-reported events for the cited work

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Observation 0b7d69da-361e-4b83-a497-c1ff5dc445a2 · outbound

This paper cites D., Khajavi, M., B \"u ttner, M., Wagenstetter, M., Avsec, Z ., Gayoso, A., Yosef, N., Interlandi, M., Rybakov, S., Misharin, A.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data D., Khajavi, M., B \"u ttner, M., Wagenstetter, M., Avsec, Z ., Gayoso, A., Yosef, N., Interlandi, M., Rybakov, S., Misharin, A

Reference 38

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ac6c96d8-7598-4f39-975f-443ab1fd00dc · outbound

This paper cites A sandbox for prediction and integration of DNA, RNA, and proteins in single cells.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A sandbox for prediction and integration of DNA, RNA, and proteins in single cells

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.191555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7c65c09e-dd31-4ec7-9bc5-22461ca8300e · outbound

This paper cites u ttner, M., Chaichoompu, K., Danese, A., Interlandi, M., M \.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data u ttner, M., Chaichoompu, K., Danese, A., Interlandi, M., M \

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:22.091654Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 1e2c71d5-b367-49d6-8515-1ce3f441331d · outbound

This paper cites A closer look at benchmarking self-supervised pre-training with image classification.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A closer look at benchmarking self-supervised pre-training with image classification

Reference 41

Resolution: verified exact; doi, observed 2026-08-07T05:08:18.066265Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation aeb33c00-2c13-44a5-b349-22d6b1f971d5 · outbound

This paper cites an unresolved cited work.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Unresolved cited work

Reference 42

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Observation 7c3e62d4-694d-4a97-ae9b-e0f73efee7bf · outbound

This paper cites an unresolved cited work.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Unresolved cited work

Reference 43

Resolution: unresolved; raw_fallback, observed 2026-08-07T05:08:21.900516Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 51d87ca4-042d-46cf-a92b-c082b5661dec · outbound

This paper cites D., Miao, Z., Meyer, K.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data D., Miao, Z., Meyer, K

Reference 44

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:13.723341Z

Source-reported events for the cited work

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Observation 270969ad-d616-42cd-83f4-6a3c82a029bb · outbound

This paper cites W., Hallacy, C., Ramesh, A., Goh, G., Agarwal, S., Sastry, G., Askell, A., Mishkin, P., Clark, J., et al.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data W., Hallacy, C., Ramesh, A., Goh, G., Agarwal, S., Sastry, G., Askell, A., Mishkin, P., Clark, J., et al

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:21.697342Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation cd7cb741-f2e4-431e-b2be-85af9952c58b · outbound

This paper cites S., and Theis, F.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data S., and Theis, F

Reference 46

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:13.951299Z

Source-reported events for the cited work

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Observation eae28998-7085-4b9c-9b5c-927dfb40470a · outbound

This paper cites S., and Theis, F.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data S., and Theis, F

Reference 47

Resolution: verified exact; doi, observed 2026-08-07T05:08:17.925798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation e01dfd02-0a14-45fc-83fe-ac49ed7a94ba · outbound

This paper cites C., Rawat, Y.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data C., Rawat, Y

Reference 48

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Source-reported events for the cited work

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Observation ac95079d-a399-4c07-827c-f826ef2a2444 · outbound

This paper cites C., Gillett, T.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data C., Gillett, T

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:14.241385Z

Source-reported events for the cited work

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Observation 7fbccca1-477a-43d6-8ff5-2bf6142f43d3 · outbound

This paper cites B., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., et al.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data B., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., et al

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:21.475342Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 847ca49d-e326-4664-937e-534e66422076 · outbound

This paper cites Improved deep metric learning with multi-class N-pair loss objective.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Improved deep metric learning with multi-class N-pair loss objective

Reference 51

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:21.236655Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 07e25a21-03a6-42a0-b8f5-d7979f0172e1 · outbound

This paper cites K., Swerdlow, H., Satija, R., and Smibert, P.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data K., Swerdlow, H., Satija, R., and Smibert, P

Reference 52

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:14.538006Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3ed2a286-21c2-4104-bfa6-3cec3d5b2d9f · outbound

This paper cites Lightly , 2023.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Lightly , 2023

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:21.058306Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 6ca71e6f-915b-4652-8ab8-5a4e253d3df1 · outbound

This paper cites T., Savage, A.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data T., Savage, A

Reference 54

Resolution: verified exact; doi, observed 2026-08-07T05:08:17.785227Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 04eee51c-a044-46c1-b9c1-8f661368e738 · outbound

This paper cites B., Siddiqui, A., Lao, K., and Surani, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data B., Siddiqui, A., Lao, K., and Surani, M

Reference 55

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:14.893515Z

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Unavailable: canonical work link unavailable.

Observation 0a64b894-bf32-4133-950e-e2bdf1c6dc83 · outbound

This paper cites an unresolved cited work.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Unresolved cited work

Reference 56

Resolution: verified exact; doi, observed 2026-08-07T05:08:17.636554Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7096b495-af9a-4051-b3a0-c3481087bdcb · outbound

This paper cites V., Xiao, L., Chopra, A., Chaffin, M.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data V., Xiao, L., Chopra, A., Chaffin, M

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:20.820477Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation fcf9c993-6e53-45c3-a849-636b5b407444 · outbound

This paper cites E., Barkmann, F., and Boeva, V.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data E., Barkmann, F., and Boeva, V

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:20.619037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 7693d882-6637-445b-b591-ff83a03cbdec · outbound

This paper cites an unresolved cited work.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Unresolved cited work

Reference 59

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:15.440081Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e6591fbe-d3f4-4b20-bbe8-7bd6d0e0e1bd · outbound

This paper cites Representation Learning with Contrastive Predictive Coding.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Representation Learning with Contrastive Predictive Coding

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:15.525775Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 41039c64-44dd-43a2-9083-1f088e5e51a8 · outbound

This paper cites N., Kaiser, ., and Polosukhin, I.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data N., Kaiser, ., and Polosukhin, I

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:20.459552Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 6f40e686-82ff-48de-8869-271058492e53 · outbound

This paper cites Symmetric cross entropy for robust learning with noisy labels.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Symmetric cross entropy for robust learning with noisy labels

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:20.293568Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation fc610879-5bdd-4cbc-8f10-37a319f0fd64 · outbound

This paper cites A., Angerer, P., and Theis, F.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data A., Angerer, P., and Theis, F

Reference 63

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:15.906218Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0d8f9799-ae7c-4fbf-94b5-ef875f70fe41 · outbound

This paper cites scCLIP: Multi-modal Single-cell Contrastive Learning Integration Pre-training.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data scCLIP: Multi-modal Single-cell Contrastive Learning Integration Pre-training

Reference 64

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:20.069590Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 4e2eb39a-4c17-4958-8b63-5fc3be213fed · outbound

This paper cites I., and Yosef, N.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data I., and Yosef, N

Reference 65

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:16.166581Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bad5537f-3848-4e13-a3c7-a79c209db724 · outbound

This paper cites Investigating the Benefits of Projection Head for Representation Learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Investigating the Benefits of Projection Head for Representation Learning

Reference 66

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:16.294215Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b3af15e3-bb63-4d4e-abce-3a6dd0e9a729 · outbound

This paper cites CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity

Reference 67

Resolution: verified exact; doi, observed 2026-08-07T05:08:17.508477Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 1437067a-05b1-46fc-bb39-0c5444372886 · outbound

This paper cites scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:19.877389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 868c65ff-cbac-4a58-be41-5d69a0e01dcc · outbound

This paper cites Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale

Reference 69

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:19.680384Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 52940115-d786-4a39-be77-ff29a552519d · outbound

This paper cites Batch alignment of single-cell transcriptomics data using deep metric learning.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Batch alignment of single-cell transcriptomics data using deep metric learning

Reference 70

Resolution: verified exact; doi, observed 2026-08-07T05:08:17.350511Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 5649ec17-945e-4760-b084-b1c11de37acb · outbound

This paper cites Barlow twins: Self-supervised learning via redundancy reduction.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data Barlow twins: Self-supervised learning via redundancy reduction

Reference 71

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:16.884955Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 16db601e-1bff-4c82-a2b4-175d092faccb · outbound

This paper cites and Ma, K.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data and Ma, K

Reference 72

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T05:08:19.518975Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 9ea80fe6-f311-4832-91ca-82f997a038d5 · outbound

This paper cites L., Mason, K., Martinez, C.

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data L., Mason, K., Martinez, C

Reference 73

Resolution: unresolved; no resolver link, observed 2026-08-07T05:08:17.152547Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation a4728412-5f34-42b1-941b-ba5160d3d74f · inbound

BBOmix: A Tabular Benchmark for Hyperparameter Optimization of Unsupervised Biological Representation Learning cites this paper.

BBOmix: A Tabular Benchmark for Hyperparameter Optimization of Unsupervised Biological Representation Learning scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data

Reference 29

Resolution: verified exact; arxiv_id, observed 2026-07-02T07:36:44.989725Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.