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Paper Citation Record · LEDGER

Improving Protein Sequence Design through Designability Preference Optimization

As of 9 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 1 inbound Pith citation observation for arXiv:2506.00297.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00297 v1

Coverage vector

measured 47 of 47 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T12:12:14.333339Z

measured 48 of 48 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-02T09:46:04.299810Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

47 of 47 outbound references displayed

  • verified exact0
  • verified fuzzy37
  • unresolved10
  • parse uncertain0
  • malformed identifier0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2af98852-9dd0-4ac9-9c28-b4a53e00b860 · outbound

This paper cites Boyken, and David Baker.

Improving Protein Sequence Design through Designability Preference Optimization Boyken, and David Baker

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.470468Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 8d904d26-b77f-4c10-aa52-ceab52555064 · outbound

This paper cites Watson, David Juergens, Nathaniel R.

Improving Protein Sequence Design through Designability Preference Optimization Watson, David Juergens, Nathaniel R

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.314937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:07.553580Z digest=sha256:dc587d681d4a113ccc1db1588ab40a5fff0c90ae7a917eae54d5c6e252283308

Observation a9a4082f-7a6b-4c37-a596-e9f50e19118f · outbound

This paper cites Mackessy, Stefanie K.

Improving Protein Sequence Design through Designability Preference Optimization Mackessy, Stefanie K

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.132229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:07.781176Z digest=sha256:f09a7af1a697078b6431f0009cb5865d736d11ad8a32881c372f9567cd322b27

Observation 0d6e696c-87ab-429b-b79a-805adb881a63 · outbound

This paper cites Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.979880Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:07.931756Z digest=sha256:d98f4931926e286e8be3159a348e0d99668f4cb868536f0fd4e9d8eb91e92ba4

Observation f8ef5b18-ce88-4eae-8f0b-046824bf33ec · outbound

This paper cites Dauparas, I.

Improving Protein Sequence Design through Designability Preference Optimization Dauparas, I

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.829624Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.037654Z digest=sha256:a6e17e96cecab6f0d9d3c984c7ca94c15d7460992d48c270a2b846b63587df02

Observation b278819a-fceb-4727-81ee-212a26949612 · outbound

This paper cites Generative Models for Graph-Based Protein Design.

Improving Protein Sequence Design through Designability Preference Optimization Generative Models for Graph-Based Protein Design

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.616535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.175173Z digest=sha256:117d30ae1790940a042ea0796051c7c3f92171347807934071a979e3091ed4a5

Observation a51273d9-e6a7-4ac0-98a3-58d26e415223 · outbound

This paper cites Learning from Protein Structure with Geometric Vector Perceptrons.

Improving Protein Sequence Design through Designability Preference Optimization Learning from Protein Structure with Geometric Vector Perceptrons

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.445057Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.282188Z digest=sha256:fa34419aa56c0528cb32ff5dc53f78a0205c2aabc569ddc4911dd72c017d305f

Observation 2d6a61ec-fc6b-4da4-a248-d8b91dc018ae · outbound

This paper cites Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.217687Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.362935Z digest=sha256:99b0a02c96ab00e835b8c2c5a2750d9e71cf88b4a7dc1d690952f2f43498b564

Observation e2e86d6c-32ee-4184-b709-ee4ba3b1ada8 · outbound

This paper cites Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.070739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.463298Z digest=sha256:f883dda5c6e4065f3c43f13400306655ef0e7d069af79b2b12f37840b2e69e22

Observation 64aa0f28-23b3-4699-9f13-2140b9e63aaf · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 10

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.971485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.574989Z digest=sha256:14d36ee3791ae91e812923d5798007f0816660e59805f60ea44197188cc29ebf

Observation df37c098-33e2-4787-ad4b-7eb202472eae · outbound

This paper cites Mathews, Carla P.

Improving Protein Sequence Design through Designability Preference Optimization Mathews, Carla P

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.784350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.687842Z digest=sha256:43e0e7b92403d26dc978c0632e1e30f4cdae31a79e7b9e32608780cb7c2e6b47

Observation 7794d9b9-9b41-4d28-bb48-9dcec654c7a2 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.604167Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.785633Z digest=sha256:96e92aa5048582551ee071920a54261a214955f6ae24a9279e981a83d8178a49

Observation d796f56d-8a1c-47d8-a240-ff942a4c2489 · outbound

This paper cites ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023.

Improving Protein Sequence Design through Designability Preference Optimization ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023

Reference 13

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:08.981341Z digest=sha256:ebddbcf4beda494811bedd8bd1f390acfc34301571ac7a8f2a39dc62fd3d246d

Observation d2b07b4d-ee82-4e02-a169-71601157e8b7 · outbound

This paper cites Structure- informed Language Models Are Protein Designers.

Improving Protein Sequence Design through Designability Preference Optimization Structure- informed Language Models Are Protein Designers

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.194159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation f540e3be-e341-42f6-af36-1577547af512 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 15

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.029022Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:09.313410Z digest=sha256:018f461ddece09816da5bc51f78bdd58379c513f416dea9aa760adf51c13218a

Observation b61ce0f0-3e92-42be-9acd-8ec51a33f714 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.835745Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:09.463803Z digest=sha256:f553b4058fdf91cdd87696169a6f069e40ca57e1a17164d6f1eafa2846d364b4

Observation 845a05a9-76e5-4317-a454-6b3e8d5b1be5 · outbound

This paper cites PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020.

Improving Protein Sequence Design through Designability Preference Optimization PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020

Reference 17

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 3f2cfc53-ba5f-4c6a-b2b1-30bc0c36ea6c · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 18

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.471632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 34c1f102-df3a-4f80-9188-fabbd9e0c52d · outbound

This paper cites ProteinBench: A Holistic Evaluation of Protein Foundation Models.

Improving Protein Sequence Design through Designability Preference Optimization ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-07T12:12:09.974745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:09.974745Z digest=sha256:345c179312b5f5ae86e5b78425e80b99c69aa2bdc375516b6e9e50f1d920c1d2

Observation c1448df6-5d28-4510-ba04-9c9259ac8b6b · outbound

This paper cites Christiano, Jan Leike, Tom B.

Improving Protein Sequence Design through Designability Preference Optimization Christiano, Jan Leike, Tom B

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.265635Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:10.130405Z digest=sha256:35a4e72b1f4634ff06e1a9836eb127c18b0fcf466912b3df196d7f36519e65d1

Observation 3d566225-5afd-4df3-8d11-c6b25a5e4479 · outbound

This paper cites https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/.

Improving Protein Sequence Design through Designability Preference Optimization https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.083292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:10.298914Z digest=sha256:b3cad4f2b895573385fd34f614bad5329be5b0c5b2ae27ed67bf06e818e7e8dc

Observation b3d94b92-dc9c-46ad-b59d-55f741806825 · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025.

Improving Protein Sequence Design through Designability Preference Optimization DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.920335Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation f83dcc5d-4f4e-47b3-9b44-ab2db36b73d0 · outbound

This paper cites Ab initio characterization of protein molecular dynamics with AI2BMD.

Improving Protein Sequence Design through Designability Preference Optimization Ab initio characterization of protein molecular dynamics with AI2BMD

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.851862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 74e9f29f-9f9f-45f9-aa4a-7379c92b715c · outbound

This paper cites Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W.

Improving Protein Sequence Design through Designability Preference Optimization Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.659693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation ce64660c-dca7-4d12-be18-4484e1311fe3 · outbound

This paper cites Kinch, R.

Improving Protein Sequence Design through Designability Preference Optimization Kinch, R

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.468321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 46b073f5-423c-47af-92a6-0e51afd605ff · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 26

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:11.014273Z digest=sha256:7afc2b7c28354c7fc2946dbbc04387faccb861106dae0b50a07ee481559cf545

Observation b2e9fe4e-baa3-4dd8-bb59-4e9abbbc1400 · outbound

This paper cites Manning, Stefano Ermon, and Chelsea Finn.

Improving Protein Sequence Design through Designability Preference Optimization Manning, Stefano Ermon, and Chelsea Finn

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.306389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:11.165970Z digest=sha256:e2f1e4e760dc85ad6edf2f5fa3e7406bac91ba71e54d32edf14d4cea6e7619b6

Observation 804b6a88-0724-43f8-8d1f-4ab45718be33 · outbound

This paper cites Gomez, Łukasz Kaiser, and Illia Polosukhin.

Improving Protein Sequence Design through Designability Preference Optimization Gomez, Łukasz Kaiser, and Illia Polosukhin

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.136501Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:11.356050Z digest=sha256:c9ca74844334c80225cceeed9a9a4eebae8eff5a21ca52335f275f6b931fab4c

Observation f99cec6a-3cb1-44be-a9ae-2be9275f2f4e · outbound

This paper cites Learning inverse folding from millions of predicted structures.

Improving Protein Sequence Design through Designability Preference Optimization Learning inverse folding from millions of predicted structures

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.943807Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:11.539350Z digest=sha256:c0fc42deeb28694a295d9207411d41a8cb69bce2a7eb6f2f181f368db47fc15b

Observation eee1b8b8-fbe8-47de-b6d5-68cb12069f3d · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 30

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:17.718407Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:11.692726Z digest=sha256:7ec1a75a5196f37b5c38e779d9bf9e31998860cfd35b303886352c44db804c41

Observation b2918872-e99b-4c77-8689-59d44db28ae1 · outbound

This paper cites Nakou, Sebastian Lindner, Gavin Ayres, Lesley S.

Improving Protein Sequence Design through Designability Preference Optimization Nakou, Sebastian Lindner, Gavin Ayres, Lesley S

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.545074Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:11.888140Z digest=sha256:4d9cf1affdebe2f9d722ee1b5699c3f4ad9ee8f08a714e4ba91b0703500fdcff

Observation c0a7b5da-b725-4842-b101-12f5e12fb116 · outbound

This paper cites Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024.

Improving Protein Sequence Design through Designability Preference Optimization Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.321653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.064793Z digest=sha256:96b80667bff01940d7922aabd5b1ace7321bee01f7829d1adf97a5dc0699945a

Observation 05b9a618-875e-4fc0-96c7-b19cd467ef0b · outbound

This paper cites Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025.

Improving Protein Sequence Design through Designability Preference Optimization Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.151456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.217191Z digest=sha256:84080f8cafdc1aecdc40b2baaf274a036d3f56ee4173648d5e31ba49b979dff9

Observation 3d1291ec-e201-4752-8828-e1f79dc13430 · outbound

This paper cites A General Theoretical Paradigm to Understand Learning from Human Preferences.

Improving Protein Sequence Design through Designability Preference Optimization A General Theoretical Paradigm to Understand Learning from Human Preferences

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.963653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.373676Z digest=sha256:a0b0000d6ba6aac9c9e9666b050be71f91020a76bdfef2cb971ff7fe2e9cc966

Observation da771f2d-8b0a-4ba6-a67a-3e474c2d0448 · outbound

This paper cites Liu, and Xuanhui Wang.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Xuanhui Wang

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.746479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.524103Z digest=sha256:5d47bc60f30c10cf8c78220b9ba8ea3fee339b5d128d1ade2f97a78e5ae43211

Observation 000427cf-eae3-4b98-a095-893f0e343dbe · outbound

This paper cites SimPO: Simple Preference Optimization with a Reference-Free Reward.

Improving Protein Sequence Design through Designability Preference Optimization SimPO: Simple Preference Optimization with a Reference-Free Reward

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.609037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.690730Z digest=sha256:23a9a8d660b3fbde9192843cf1bfb7c39b13bdb59dc5e0a774895a08180a4f0e

Observation bb228053-06d5-4e03-81ad-8d498a325946 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 37

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:16.378423Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.824852Z digest=sha256:8cdffd03a36f3465ae9312d114a9c36c4ed4f5f0f5ad56a416f3cc4b36f3550c

Observation b92069dd-0cb0-4314-bbe1-8e5100a3bf59 · outbound

This paper cites The Llama 3 Herd of Models, November 2024.

Improving Protein Sequence Design through Designability Preference Optimization The Llama 3 Herd of Models, November 2024

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.198763Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:12.971901Z digest=sha256:519339a1c33afa3dbb52eda6990815c95427fe77bebc0c6a294af77c816dd583

Observation 50185078-b27c-4bc9-9743-3e1b3e693585 · outbound

This paper cites Berman, John Westbrook, Zukang Feng, Gary Gilliland, T.

Improving Protein Sequence Design through Designability Preference Optimization Berman, John Westbrook, Zukang Feng, Gary Gilliland, T

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.036068Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.139713Z digest=sha256:f2a8a932ce36251231b077633687f7aa7ca9c2a7b66f3fb35cd671bb41125134

Observation d5d5940f-8e84-4629-aaf0-f8ea471e7464 · outbound

This paper cites Ballard, Joshua Bambrick, Sebastian W.

Improving Protein Sequence Design through Designability Preference Optimization Ballard, Joshua Bambrick, Sebastian W

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.808729Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.301543Z digest=sha256:2ef89ba765b532359914292cf81b797d4b534ad36b8191f1a9b4b00df05239f7

Observation 2b3dd517-8cfe-422b-90cc-320a0eff7f60 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 41

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:15.622282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.468454Z digest=sha256:6737febc6709a61d307893c8b258aac32b52d9c51a580f9e3264fff8c840a2aa

Observation 96f9a0fb-986b-431a-9939-963d48408a0e · outbound

This paper cites Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.423051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.640287Z digest=sha256:cff179bb11df4bf2c2eb2c45ca9442af1c9aa2c51ee05f01bb2a11a80a4da67c

Observation ed509beb-2032-4162-8b9b-62704cf3adc4 · outbound

This paper cites Provably Robust DPO: Aligning Language Models with Noisy Feedback.

Improving Protein Sequence Design through Designability Preference Optimization Provably Robust DPO: Aligning Language Models with Noisy Feedback

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.237489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.774395Z digest=sha256:7da4671084238cdfb57e3f42f2e8144c5a78431b2b11888be75f1d9b334a5386

Observation c9cd7396-0fb0-4ea2-a89e-bf9a7185745f · outbound

This paper cites Liu, and Jialu Liu.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Jialu Liu

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.058823Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:13.899877Z digest=sha256:0ea58431013f03194732e0b3b730688156143086bf76a9fa48af23c395771ff1

Observation 8e71d8e0-ff20-4c12-99e2-54940b8b4b52 · outbound

This paper cites Model Alignment as Prospect Theoretic Optimization.

Improving Protein Sequence Design through Designability Preference Optimization Model Alignment as Prospect Theoretic Optimization

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.894163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:14.065811Z digest=sha256:9df3531aa60fd4e22cae1c870f426b625a192f83ca2d5682661896518987c2b5

Observation a3fc7719-a9fa-4705-97ce-588deb2af574 · outbound

This paper cites Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024.

Improving Protein Sequence Design through Designability Preference Optimization Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.735242Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:14.225058Z digest=sha256:d73901ea52f0e3e0bafebb660654dc18d5aa6e8832c3801715ed0589ebf3c47d

Observation e136365a-18d0-4fa0-8fbe-d2eb9d22e159 · outbound

This paper cites designability.

Improving Protein Sequence Design through Designability Preference Optimization designability

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.539902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-08-07T12:12:14.333339Z digest=sha256:c507045249ed6b1b09845001c5add30be8e816db68ef9205adb5a1dab2ea7bac

Pith citing papers

Observation 8f2eeb86-c8d2-4625-9aaa-101d7f166783 · inbound

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision cites this paper.

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision Improving Protein Sequence Design through Designability Preference Optimization

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-02T09:46:04.299810Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-02T09:46:04.299810Z digest=sha256:8dcf9171422eb94ccc372ce3a390328dc55c0caf88f82f06252536079019ffe3