Paper Citation Record · LEDGER

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis

As of 18 August 2026, this Paper Citation Record lists 30 of 30 outbound references and 0 inbound Pith citation observations for arXiv:2506.18940.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.18940 v1

Coverage vector

measured 30 of 30 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T18:59:56.988387Z

measured 30 of 30 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

30 of 30 outbound references displayed

verified exact4
verified fuzzy16
unresolved10
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation b58ae706-152f-4194-89da-a44665bbfb99 · outbound

This paper cites an unresolved cited work.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Unresolved cited work

Reference 1

Resolution: unresolved; raw_fallback, observed 2026-08-15T18:59:57.362940Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation d50a9830-ed12-4760-a1f7-cb9f6b40c3c5 · outbound

This paper cites Extrachromosomal circular dna: category, biogenesis, recognition, and functions.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Extrachromosomal circular dna: category, biogenesis, recognition, and functions

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.349639Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation fe30e3af-f2c5-48f9-ae4f-be96f984611d · outbound

This paper cites Y., and Tsai, H.-K.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Y., and Tsai, H.-K

Reference 3

Resolution: verified exact; doi, observed 2026-08-15T18:59:57.053491Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e1037ac6-dc7c-4f44-b91a-c040e8b7a4ca · outbound

This paper cites Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Duality.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Duality

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.884144Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 47916818-abb7-49ff-8da4-b1ad698511a1 · outbound

This paper cites Extrachromosomal dna (ecdna) in cancer: mechanisms, functions, and clinical implications.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Extrachromosomal dna (ecdna) in cancer: mechanisms, functions, and clinical implications

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.336604Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation a82874f8-db4b-43a1-831e-423ef53fc1dd · outbound

This paper cites eccdna-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular dna from high-throughput sequencing data.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis eccdna-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular dna from high-throughput sequencing data

Reference 6

Resolution: verified exact; doi, observed 2026-08-15T18:59:57.041475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e95e9f10-8421-43d8-a639-5eac627f4528 · outbound

This paper cites A new algorithm for data compression.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis A new algorithm for data compression

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.898596Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bbbd7ddf-b916-431c-80d3-69cd68aadc8c · outbound

This paper cites Mamba: Linear-Time Sequence Modeling with Selective State Spaces.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Mamba: Linear-Time Sequence Modeling with Selective State Spaces

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.902160Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1472b15e-7a27-4975-bdf3-fe9d3e9dee28 · outbound

This paper cites A., Bailey, T.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis A., Bailey, T

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.317714Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation d2553556-8b8c-4b05-852b-928c59ed527f · outbound

This paper cites Bidirectional LSTM-CRF Models for Sequence Tagging.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Bidirectional LSTM-CRF Models for Sequence Tagging

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.909372Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 65469e45-24ca-4f1e-a72b-9fe6fb5db8ec · outbound

This paper cites S., Zettlemoyer, L., and Levy, O.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis S., Zettlemoyer, L., and Levy, O

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.914151Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 85c0f8eb-5b79-4a79-ab98-06640c2b8255 · outbound

This paper cites P., Rodriguez-Fos, E., Helmsauer, K., Burkert, M., MacArthur, I.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis P., Rodriguez-Fos, E., Helmsauer, K., Burkert, M., MacArthur, I

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.297429Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 4da1268d-7dc1-498f-851c-c33367abac0e · outbound

This paper cites Transcription factor znf263 enhances egfr-targeted therapeutic response and reduces residual disease in lung adenocarcinoma.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Transcription factor znf263 enhances egfr-targeted therapeutic response and reduces residual disease in lung adenocarcinoma

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.286109Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation cd7daeff-3d1c-40d8-adad-132c7ba9822b · outbound

This paper cites Small extrachromosomal circular dna (eccdna): major functions in evolution and cancer.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Small extrachromosomal circular dna (eccdna): major functions in evolution and cancer

Reference 14

Resolution: verified exact; doi, observed 2026-08-15T18:59:57.027448Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation aac26130-328d-439b-8757-8ee2a3446edb · outbound

This paper cites L., Takata, M., Gon c alves-Carneiro, D., Keane, S.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis L., Takata, M., Gon c alves-Carneiro, D., Keane, S

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.275695Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 5b45aa4c-edb1-4d45-b82c-c723a052c0d1 · outbound

This paper cites P., Richard, G., Caton, J., Lopez Carranza, N., Skwark, M., et al.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis P., Richard, G., Caton, J., Lopez Carranza, N., Skwark, M., et al

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.264525Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c6b96f11-566e-4b51-9632-36ea746607c3 · outbound

This paper cites HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.935931Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4c4619d9-4352-453a-b84e-9086db63e854 · outbound

This paper cites Retracted: A novel tumor suppressor gene, znf24, inhibits the development of nsclc by inhibiting the wnt signaling pathway to induce cell senescence.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Retracted: A novel tumor suppressor gene, znf24, inhibits the development of nsclc by inhibiting the wnt signaling pathway to induce cell senescence

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.253281Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation a7d37494-a1d6-4f12-98c9-5dc9fae48a29 · outbound

This paper cites New insights of extrachromosomal dna in tumorigenesis and therapeutic resistance of cancer.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis New insights of extrachromosomal dna in tumorigenesis and therapeutic resistance of cancer

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.240944Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation fa90dd70-10e4-4288-bdc9-5b9654f7e6c5 · outbound

This paper cites H., Gokaslan, A., Dao, T., Gu, A., and Kuleshov, V.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis H., Gokaslan, A., Dao, T., Gu, A., and Kuleshov, V

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.229551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 341d8490-fdef-4379-bc4b-6b564702ab38 · outbound

This paper cites Neural Machine Translation of Rare Words with Subword Units.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Neural Machine Translation of Rare Words with Subword Units

Reference 21

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.952120Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 943fa004-7ecf-491f-aa48-4ea18bd3dea5 · outbound

This paper cites K., Mukherjee, S., Ebert, B.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis K., Mukherjee, S., Ebert, B

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.219449Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 56eebc41-d294-4e52-b724-cf56c2df34e5 · outbound

This paper cites M., Deshpande, V., Beyter, D., Koga, T., Rusert, J., Lee, C., Li, B., Arden, K., Ren, B., Nathanson, D.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis M., Deshpande, V., Beyter, D., Koga, T., Rusert, J., Lee, C., Li, B., Arden, K., Ren, B., Nathanson, D

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.208292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation a792c4eb-698f-4bb2-8194-c485ff9df195 · outbound

This paper cites T., Yang, A., Albu, M., Cote, A.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis T., Yang, A., Albu, M., Cote, A

Reference 24

Resolution: verified exact; doi, observed 2026-08-15T18:59:57.197068Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation e6a48534-859b-4f76-bc8b-9314c87f3824 · outbound

This paper cites M., Nguyen, N., Raviram, R., Erb, M., Santini, J., Luebeck, J., Rajkumar, U., Diao, Y., Li, B., et al.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis M., Nguyen, N., Raviram, R., Erb, M., Santini, J., Luebeck, J., Rajkumar, U., Diao, Y., Li, B., et al

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.185886Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation aeec7979-7b17-401d-bc02-27fa2c3277ca · outbound

This paper cites Circlebase: an integrated resource and analysis platform for human eccdnas.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Circlebase: an integrated resource and analysis platform for human eccdnas

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.174289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 352c6ca3-187e-4e85-a3b9-b900c619b622 · outbound

This paper cites Extrachromosomal circular dna: Current status and future prospects.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis Extrachromosomal circular dna: Current status and future prospects

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.162822Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation 032dcffb-6954-4105-8138-0afa6e2bc0ca · outbound

This paper cites eccdna atlas: a comprehensive resource of eccdna catalog.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis eccdna atlas: a comprehensive resource of eccdna catalog

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T18:59:57.151102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.

Observation c584288d-ae2a-4ae9-bc5f-675791fd5920 · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.983774Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b244311e-7037-4da0-8723-f9dcf3e93cb8 · outbound

This paper cites write newline.

eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis write newline

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-15T18:59:56.988387Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.