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Paper Citation Record · LEDGER

Do Protein Transformers Have Biological Intelligence?

As of 22 August 2026, this Paper Citation Record lists 76 of 76 outbound references and 0 inbound Pith citation observations for arXiv:2506.06701.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.06701 v1

Coverage vector

measured 76 of 76 reference resolution

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measured 76 of 76 standing notices

One-hop event checks from named stored sources.

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measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

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measured 0 of 1 external citation measurements

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Source: cited_works

Reference resolution

76 of 76 outbound references displayed

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External citation measurements

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Outbound references

Observation d18c9e46-f515-4b33-bad7-a71249350969 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 1

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Observation b8ec6bbd-a370-4561-9399-c9fde4f23ddc · outbound

This paper cites Unified rational protein engineering with sequence-based deep representation learn- ing.

Do Protein Transformers Have Biological Intelligence? Unified rational protein engineering with sequence-based deep representation learn- ing

Reference 2

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This paper cites Jaakkola.

Do Protein Transformers Have Biological Intelligence? Jaakkola

Reference 3

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Observation cf5fea47-0ef7-4113-9792-bbd8b2b8f70d · outbound

This paper cites Vivit: A video vision transformer.

Do Protein Transformers Have Biological Intelligence? Vivit: A video vision transformer

Reference 4

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Observation 186240e5-e3ae-4e76-8b30-d80c12f2d50e · outbound

This paper cites Layer Normalization.

Do Protein Transformers Have Biological Intelligence? Layer Normalization

Reference 5

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Observation 03f2ab7a-eb79-4e9e-90c2-4c7ab59bd05e · outbound

This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.

Do Protein Transformers Have Biological Intelligence? Accurate prediction of protein structures and interactions using a three-track neural network

Reference 6

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Observation 60a8b682-8bcf-4bb4-854a-4e7a0a08d000 · outbound

This paper cites Beit: BERT pre-training of image transformers.

Do Protein Transformers Have Biological Intelligence? Beit: BERT pre-training of image transformers

Reference 7

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Observation 9435c683-9846-480c-a686-7fe21afefb4e · outbound

This paper cites GAM: explainable visual similarity and classification via gradient ac- tivation maps.

Do Protein Transformers Have Biological Intelligence? GAM: explainable visual similarity and classification via gradient ac- tivation maps

Reference 8

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Observation 1fbed2a2-dabf-44b3-86e9-29fb54b53edb · outbound

This paper cites Emerging properties in self-supervised vision transformers.

Do Protein Transformers Have Biological Intelligence? Emerging properties in self-supervised vision transformers

Reference 9

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Observation 28cb1c92-704d-42f8-81d5-a008acd4a187 · outbound

This paper cites Balasubramanian.

Do Protein Transformers Have Biological Intelligence? Balasubramanian

Reference 10

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Observation 4cd6d3cf-ace2-494d-9fe8-4d4e51c9f3af · outbound

This paper cites Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers.

Do Protein Transformers Have Biological Intelligence? Generic attention-model explainability for interpret- ing bi-modal and encoder-decoder transformers

Reference 11

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Observation a3827541-5bba-42d4-b04f-c584a64ddf51 · outbound

This paper cites Transformer interpretability beyond attention visual- ization.

Do Protein Transformers Have Biological Intelligence? Transformer interpretability beyond attention visual- ization

Reference 12

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Observation 89d1923e-82e9-4925-a193-d0ecd45a6540 · outbound

This paper cites Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent.

Do Protein Transformers Have Biological Intelligence? Explain the explainer: Interpreting model-agnostic counterfactual explanations of a deep re- inforcement learning agent

Reference 13

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This paper cites GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations.

Do Protein Transformers Have Biological Intelligence? GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendations

Reference 14

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This paper cites The dark side of explanations: Poisoning recommender systems with counterfactual examples.

Do Protein Transformers Have Biological Intelligence? The dark side of explanations: Poisoning recommender systems with counterfactual examples

Reference 15

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Observation 70c7f453-6d5a-4b9b-bb55-3405a3a211f1 · outbound

This paper cites Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis.

Do Protein Transformers Have Biological Intelligence? Bonemet: An open large-scale multi-modal murine dataset for breast cancer bone metastasis diagnosis and prognosis

Reference 16

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This paper cites Electra: Pre- training text encoders as discriminators rather than generators.

Do Protein Transformers Have Biological Intelligence? Electra: Pre- training text encoders as discriminators rather than generators

Reference 17

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This paper cites Real time image saliency for black box classifiers.

Do Protein Transformers Have Biological Intelligence? Real time image saliency for black box classifiers

Reference 18

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Do Protein Transformers Have Biological Intelligence? Ramaswamy

Reference 19

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Do Protein Transformers Have Biological Intelligence? BERT: pre-training of deep bidirectional transformers for language understanding

Reference 20

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This paper cites An image is worth 16x16 words: Transformers for image recognition at scale.

Do Protein Transformers Have Biological Intelligence? An image is worth 16x16 words: Transformers for image recognition at scale

Reference 21

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Observation 6e1c9d14-9e3c-4fbe-a3d9-2aa6af9b3f4c · outbound

This paper cites Muscle: a multiple sequence alignment method with reduced time and space complexity.

Do Protein Transformers Have Biological Intelligence? Muscle: a multiple sequence alignment method with reduced time and space complexity

Reference 22

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This paper cites Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021.

Do Protein Transformers Have Biological Intelligence? Prottrans: To- ward understanding the language of life through self-supervised learning.IEEE transactions on pattern analysis and machine intelligence, 44(10):7112–7127, 2021

Reference 23

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This paper cites Backward recursive class activation map refinement for high resolution saliency map.

Do Protein Transformers Have Biological Intelligence? Backward recursive class activation map refinement for high resolution saliency map

Reference 24

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This paper cites Protein complex prediction with alphafold-multimer.

Do Protein Transformers Have Biological Intelligence? Protein complex prediction with alphafold-multimer

Reference 25

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This paper cites Multiscale vision transformers.

Do Protein Transformers Have Biological Intelligence? Multiscale vision transformers

Reference 26

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This paper cites Pfam: the protein families database.

Do Protein Transformers Have Biological Intelligence? Pfam: the protein families database

Reference 27

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This paper cites Understanding deep networks via extremal perturbations and smooth masks.

Do Protein Transformers Have Biological Intelligence? Understanding deep networks via extremal perturbations and smooth masks

Reference 28

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Do Protein Transformers Have Biological Intelligence? Fong and Andrea Vedaldi

Reference 29

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This paper cites Axiom- based grad-cam: Towards accurate visualization and explanation of cnns.

Do Protein Transformers Have Biological Intelligence? Axiom- based grad-cam: Towards accurate visualization and explanation of cnns

Reference 30

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Do Protein Transformers Have Biological Intelligence? Girshick

Reference 31

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Do Protein Transformers Have Biological Intelligence? Deep residual learning for image recognition

Reference 32

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This paper cites Learning inverse folding from millions of predicted structures.

Do Protein Transformers Have Biological Intelligence? Learning inverse folding from millions of predicted structures

Reference 33

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This paper cites Exploring evolution-aware & -free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware & -free protein language models as protein function predictors

Reference 34

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Observation 3bd1ede6-45b1-486f-b429-917f868dc43b · outbound

This paper cites Exploring evolution-aware &-free protein language models as protein function predictors.

Do Protein Transformers Have Biological Intelligence? Exploring evolution-aware &-free protein language models as protein function predictors

Reference 35

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Observation 0b127913-10d0-4c77-bc97-f417e0af739e · outbound

This paper cites Deep networks with stochastic depth.

Do Protein Transformers Have Biological Intelligence? Deep networks with stochastic depth

Reference 36

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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation ecc77feb-9764-46cf-b6ee-cf27b2a0bf5f · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 37

Resolution
unresolved
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 283584a5-f5d5-4394-ad01-cd3bff72da33 · outbound

This paper cites Lay- ercam: Exploring hierarchical class activation maps for localization.

Do Protein Transformers Have Biological Intelligence? Lay- ercam: Exploring hierarchical class activation maps for localization

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.900247Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:35.847267Z digest=sha256:5b1799ba243bf0770fd33d2c5a6442dd3e33f4b253f2d333f264fc77de2c18f6

Observation 56ee7267-7edc-4742-bc31-5ba033501ca6 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Do Protein Transformers Have Biological Intelligence? Highly accurate protein structure prediction with alphafold

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:36.008304Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:36.008304Z digest=sha256:667169ddcd71106ac5ae95ec2f2331187595ce3aecc5073b71f491452db3340a

Observation f68b1fc1-7a82-40a3-8196-1b63933af045 · outbound

This paper cites Cai, James Wexler, Fernanda B.

Do Protein Transformers Have Biological Intelligence? Cai, James Wexler, Fernanda B

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.873741Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:36.168117Z digest=sha256:07e6115aa79ef8fd8681f67660d17a0b3b18e45e89a930f1152f418e6398a4f3

Observation 8f6991d2-7f80-4e5c-bdab-e96e4630cb8e · outbound

This paper cites Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery.

Do Protein Transformers Have Biological Intelligence? Development of a tsr-based method for protein 3-d structural comparison with its applications to protein classification and motif discovery

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.857069Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 504bf1bc-3043-4e82-bd5a-bf91f579abf3 · outbound

This paper cites Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former.

Do Protein Transformers Have Biological Intelligence? Mmst-vit: Climate change-aware crop yield prediction via multi-modal spatial-temporal vision trans- former

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.841656Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 899e5712-f219-4625-84b5-e9d32a3c4a5c · outbound

This paper cites An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions.

Do Protein Transformers Have Biological Intelligence? An open and large-scale dataset for multi-modal climate change-aware crop yield predic- tions

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.825397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 9e32778c-fded-43f2-884b-bd844e888834 · outbound

This paper cites Towards robust vision trans- former via masked adaptive ensemble.

Do Protein Transformers Have Biological Intelligence? Towards robust vision trans- former via masked adaptive ensemble

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.809374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation fc194084-1cc3-41c2-8497-e1a5344e863a · outbound

This paper cites Comprehensive transformer-based model architecture for real-world storm predic- tion.

Do Protein Transformers Have Biological Intelligence? Comprehensive transformer-based model architecture for real-world storm predic- tion

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.793992Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:36.935367Z digest=sha256:cfb33590bfd09530ff36090f0819c7c5b235f4713f9a082c6fe2080d4491df60

Observation e8ad086c-48f1-4f9d-a5c5-454f441c1e03 · outbound

This paper cites Swin transformer: Hierarchical vision transformer using shifted windows.

Do Protein Transformers Have Biological Intelligence? Swin transformer: Hierarchical vision transformer using shifted windows

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.779219Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.069131Z digest=sha256:44f503414c825a1c2ff18635b949b097fbf503eeedfeccc3caad44b32d66c256

Observation e06838d4-5bd4-4905-9037-bb244dc838f6 · outbound

This paper cites Sgdr: Stochastic gradient descent with warm restarts.

Do Protein Transformers Have Biological Intelligence? Sgdr: Stochastic gradient descent with warm restarts

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.763420Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.238192Z digest=sha256:4bd029291defa1441f8a478a5c8df3c26767a0066f8305b56ec220b02e7bf8d5

Observation 8cae4fba-e2cc-44be-931d-8cd8f238d464 · outbound

This paper cites Decoupled weight decay regularization.

Do Protein Transformers Have Biological Intelligence? Decoupled weight decay regularization

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:37.346467Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:37.346467Z digest=sha256:a488b85d8917bd53e16159250f6f901c96c96caf050b9ae83e00cc1e2157b43a

Observation 4262542d-1011-4386-86b2-7cd0334e3517 · outbound

This paper cites Lundberg and Su-In Lee.

Do Protein Transformers Have Biological Intelligence? Lundberg and Su-In Lee

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.735342Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.456424Z digest=sha256:b487fad4a8f6522bfb16ac3e9c53b0775cdd61b9a868205007db2535a8836b86

Observation a7494afb-7373-44b2-a258-320b7f883394 · outbound

This paper cites Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures.

Do Protein Transformers Have Biological Intelligence? Antigen- specific antibody design and optimization with diffusion-based generative models for protein structures

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.720237Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.560130Z digest=sha256:ab9bf938e7d4f48d02cf777faca3ae2f7f7b06a94feff69ceef21ee56b757406

Observation 0290c4fc-804a-457d-80c9-67d80de7b4da · outbound

This paper cites Visualizing deep convolutional neural networks using natural pre-images.

Do Protein Transformers Have Biological Intelligence? Visualizing deep convolutional neural networks using natural pre-images

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.705458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.643365Z digest=sha256:ce756d01b49d6c57c139a504c6233a8d606cdd08eb08f17fdc8fa35554080fdc

Observation e658bf7d-5b94-44a1-8088-eccb0da84b27 · outbound

This paper cites The comprehensive antibiotic resistance database.

Do Protein Transformers Have Biological Intelligence? The comprehensive antibiotic resistance database

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.689862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.773792Z digest=sha256:1a335422177277db28f124c69e57e329e632a1e6609b1b68e63e62458f8f1d9a

Observation cae86fe3-422b-410a-ac92-498ccfc3341d · outbound

This paper cites Language models enable zero-shot prediction of the effects of mutations on protein function.

Do Protein Transformers Have Biological Intelligence? Language models enable zero-shot prediction of the effects of mutations on protein function

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.674831Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.883874Z digest=sha256:4da11536e7d55554ecbd848677c7bf2304788028c617fad871573ddd6bf6aa9e

Observation b639c873-1d1f-4ddc-a3b5-e16205b976a4 · outbound

This paper cites Protein data bank (pdb), 2023.

Do Protein Transformers Have Biological Intelligence? Protein data bank (pdb), 2023

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.659193Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:37.958655Z digest=sha256:bfa3156325a07d05208bea9c7390ba55d535ffa408b45da95cd0720803cdbd40

Observation 1181742e-b13e-421b-9a55-b90e766f92a3 · outbound

This paper cites RISE: randomized input sampling for explanation of black-box models.

Do Protein Transformers Have Biological Intelligence? RISE: randomized input sampling for explanation of black-box models

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.643235Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.066807Z digest=sha256:e263535580629b114acc994eced0d61564be0fe999c54cf69d8fccb71769c53d

Observation ca9b80fd-8ef9-44b6-9c6e-0ac2b2ab7b2a · outbound

This paper cites Evaluating protein transfer learning with tape.

Do Protein Transformers Have Biological Intelligence? Evaluating protein transfer learning with tape

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.628164Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.142169Z digest=sha256:4740d31ff4ed9b2077749d258530065ccb95cdc8109bfb335e75a646c7f9a479

Observation 686d88a5-98ee-4dba-accf-0d65b20f428d · outbound

This paper cites Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives.

Do Protein Transformers Have Biological Intelligence? Canny, Pieter Abbeel, Tom Sercu, and Alexander Rives

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.610461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.238574Z digest=sha256:00ec27fa658dcd801a88d05da0990e72d2064d9a9a19ccdb23bb721eabb5027a

Observation 300652dd-e975-40af-a283-1e366c03feee · outbound

This paper cites Trans- former protein language models are unsupervised structure learners.

Do Protein Transformers Have Biological Intelligence? Trans- former protein language models are unsupervised structure learners

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.595527Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.352073Z digest=sha256:e9627806016e44a7ccf54ad692dc444288624c2dac7fe889cb556930dfd798da

Observation fead9bd7-6ff2-454d-b335-92498d7516de · outbound

This paper cites Deep generative models of genetic variation capture the effects of mutations.

Do Protein Transformers Have Biological Intelligence? Deep generative models of genetic variation capture the effects of mutations

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.579645Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.448250Z digest=sha256:cf79543a2b9033fec7dd4b0354a6c410cf3b68b81cacf1fcde2b53846324aee4

Observation 0cad6645-2de9-4d2d-b7d5-8006ea375a1b · outbound

This paper cites Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

Do Protein Transformers Have Biological Intelligence? Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Reference 60

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.560612Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.568098Z digest=sha256:0ac62fc595a39ffedd840b5f3dd7f28bdfe9645e30a31b98532b0cf9605dbb09

Observation 6ab03516-f970-4fe2-845c-f9ac4e37f8dd · outbound

This paper cites High-resolution image synthesis with latent diffusion models.

Do Protein Transformers Have Biological Intelligence? High-resolution image synthesis with latent diffusion models

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.543357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.664570Z digest=sha256:f4f20d50c62486ec6e50a70dfff097ee6f31e00223e5925a6a1031c983dee85e

Observation d700e65c-c481-4c35-9384-d46c1c764343 · outbound

This paper cites Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra.

Do Protein Transformers Have Biological Intelligence? Selvaraju, Michael Cogswell, Abhishek Das, Ramakrishna Vedantam, Devi Parikh, and Dhruv Batra

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.526195Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.775160Z digest=sha256:b23e2a5b506361215935615123f98b16f0e555b55472d8d8b6dda6d480db87ca

Observation 1175002c-6a24-45a0-b973-333d83b09d0a · outbound

This paper cites Deep inside convolutional net- works: Visualising image classification models and saliency maps.

Do Protein Transformers Have Biological Intelligence? Deep inside convolutional net- works: Visualising image classification models and saliency maps

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.509145Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.876176Z digest=sha256:e524ce0e7ab2e1cba2322e771c84fb81cc66d49d904b5c6383f86f00b79e446f

Observation 6b3a760e-f701-4f49-acd1-a6ea765ecd84 · outbound

This paper cites Full-gradient representation for neural network visual- ization.

Do Protein Transformers Have Biological Intelligence? Full-gradient representation for neural network visual- ization

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.492996Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:38.943197Z digest=sha256:aedfb226b056215d6555613f7ee11b01bbac1709f05e1869b41c67958192bc11

Observation b2d69b43-89d5-4c3e-a4e4-394f052f17f8 · outbound

This paper cites Axiomatic attribution for deep networks.

Do Protein Transformers Have Biological Intelligence? Axiomatic attribution for deep networks

Reference 65

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:39.021252Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:39.021252Z digest=sha256:51253e4fb30ee958b63dadcdc55843210d0c37e54e7afb92f0380da6efcec2d6

Observation 9e70d12c-5054-4e77-a07e-6ede4df93c8f · outbound

This paper cites Re- thinking the inception architecture for computer vision.

Do Protein Transformers Have Biological Intelligence? Re- thinking the inception architecture for computer vision

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.396937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.101129Z digest=sha256:0ed3d5ffa4d50802ea2a17a2ca719c9c9c73702cb2e8c86a1f0341a4e1c1abfe

Observation f4664a95-fd55-4235-80ca-1f563ccb65a7 · outbound

This paper cites Training data-efficient image transformers & distillation through attention.

Do Protein Transformers Have Biological Intelligence? Training data-efficient image transformers & distillation through attention

Reference 67

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.376354Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.177243Z digest=sha256:ebd1c7de39c0af7f803414be4483c2aea9445c0013fbda4adf02002ef0b02a0b

Observation 99271eaa-d27e-4777-829b-683da062391a · outbound

This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

Do Protein Transformers Have Biological Intelligence? Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 68

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.358972Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.266454Z digest=sha256:c9be34ad344526aa8b57b0ba0f57df634933a6192b6ca05a3f144a7b7908c3a5

Observation 8bce1e96-11c6-4794-8adf-a242ef2107a3 · outbound

This paper cites Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned.

Do Protein Transformers Have Biological Intelligence? Analyzing multi- head self-attention: Specialized heads do the heavy lifting, the rest can be pruned

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.337851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.417225Z digest=sha256:e1a09132e40fc63c1cfc163bcbfa740a57512ae921dcb4da7f9d45fffb42ad3c

Observation 1041fac2-e071-44c1-bf00-fa1409dd71e8 · outbound

This paper cites Score-cam: Score-weighted visual explanations for convolutional neural networks.

Do Protein Transformers Have Biological Intelligence? Score-cam: Score-weighted visual explanations for convolutional neural networks

Reference 70

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.322203Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.590352Z digest=sha256:f666bade810174dab853426b8ae143434543193f69b454df3d3b5b8bf19a0896

Observation c5b1b9e6-3201-4ac1-809f-fef677bc5a19 · outbound

This paper cites Pyramid vision transformer: A versatile backbone for dense prediction without convolutions.

Do Protein Transformers Have Biological Intelligence? Pyramid vision transformer: A versatile backbone for dense prediction without convolutions

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.304158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.707866Z digest=sha256:15cbafe6c872fef09d53a480d759466123a2004aee97f2f08bd513d476768499

Observation 78802d70-2c6a-46d0-ae3c-eb07d40bc234 · outbound

This paper cites an unresolved cited work.

Do Protein Transformers Have Biological Intelligence? Unresolved cited work

Reference 72

Resolution
unresolved
raw_fallback, observed 2026-08-07T05:57:41.287555Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:39.918531Z digest=sha256:89f944c57cec2780074db96b07496b99258c40b2cb1ad705febf53b85e504fca

Observation f8075b43-9848-4e94-b344-a4e7c94ede81 · outbound

This paper cites Zeiler and Rob Fergus.

Do Protein Transformers Have Biological Intelligence? Zeiler and Rob Fergus

Reference 73

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.267459Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 6598eed1-0d09-4a48-b5aa-862998a50888 · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.

Do Protein Transformers Have Biological Intelligence? Tm-align: a protein structure alignment algorithm based on the tm-score

Reference 74

Resolution
unresolved
no resolver link, observed 2026-08-07T05:57:40.222195Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T05:57:40.222195Z digest=sha256:07565f5528a9bac9abf92554da964a33d10c2214bc1045039e7fcb4c557d4d72

Observation 46ef4934-f632-4580-9705-0a73514e62be · outbound

This paper cites Learning deep features for discriminative localization.

Do Protein Transformers Have Biological Intelligence? Learning deep features for discriminative localization

Reference 75

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:41.119036Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-07T05:57:40.395764Z digest=sha256:b924ab246dde654af6d5a5491ee98f0a2eb69630ae44bdd9b2fdcbc94e7008c6

Observation 6afb8fcf-ef0a-4542-a936-0a7bf27a6aab · outbound

This paper cites residue number.

Do Protein Transformers Have Biological Intelligence? residue number

Reference 192

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T05:57:40.870533Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Pith citing papers

No inbound Pith citation observations are available.