Higher-Order Cell Tracking Transformer | Paper Citation Record

Observation 4ad78e96-130c-4a9a-af62-72ec63531891 · outbound

This paper cites Leveraging learned object features for transformer-based cell tracking in mi- croscopy.

Higher-Order Cell Tracking Transformer Leveraging learned object features for transformer-based cell tracking in mi- croscopy

Reference 1

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Observation a34c5c1f-2958-4008-b1c5-fbc178509c69 · outbound

This paper cites Graph neural network for cell tracking in microscopy videos.

Higher-Order Cell Tracking Transformer Graph neural network for cell tracking in microscopy videos

Reference 2

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Observation e15a032a-2a81-4fc1-b091-968e33004d74 · outbound

This paper cites Tracking without bells and whistles.

Higher-Order Cell Tracking Transformer Tracking without bells and whistles

Reference 3

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Observation a2ac2f22-8936-4f5b-a6ce-50f8b92b9d65 · outbound

This paper cites Simple online and realtime tracking.

Higher-Order Cell Tracking Transformer Simple online and realtime tracking

Reference 4

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Observation f9e4be98-370c-41b9-9580-baf494162827 · outbound

This paper cites Beyond low-frequency information in graph convolutional networks.

Higher-Order Cell Tracking Transformer Beyond low-frequency information in graph convolutional networks

Reference 5

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Observation b58bfdf7-50dd-41e7-a09f-dd81888c9a32 · outbound

This paper cites Swept confocally- aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms.Nature Photonics, 9(2):113–119, 2015.

Higher-Order Cell Tracking Transformer Swept confocally- aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms.Nature Photonics, 9(2):113–119, 2015

Reference 6

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Observation ffc5f018-35b4-43d8-b6f1-be9f82c53c7c · outbound

This paper cites Large-scale multi-hypotheses cell tracking using ultrametric contours maps.

Higher-Order Cell Tracking Transformer Large-scale multi-hypotheses cell tracking using ultrametric contours maps

Reference 7

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Observation 5182f5de-10fe-4ffe-bb3b-294c0457f40c · outbound

This paper cites Ultrack: pushing the limits of cell tracking across biological scales.Nature Methods, pages 1–14, 2025.

Higher-Order Cell Tracking Transformer Ultrack: pushing the limits of cell tracking across biological scales.Nature Methods, pages 1–14, 2025

Reference 8

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Observation bb55cd4d-5b9a-448b-9cd3-c5dc4d1edf4e · outbound

This paper cites Learning a neural solver for multiple object tracking.

Higher-Order Cell Tracking Transformer Learning a neural solver for multiple object tracking

Reference 9

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Observation 96688f76-4340-43ae-94e3-cadc6c1315d9 · outbound

This paper cites End-to-end object detection with transformers.

Higher-Order Cell Tracking Transformer End-to-end object detection with transformers

Reference 10

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Observation 08b764f4-a249-4d33-ab40-8800493f1456 · outbound

This paper cites Long-term live imaging, cell identifica- tion and cell tracking in regenerating crustacean legs.eLife, 14:RP107534, 2025.

Higher-Order Cell Tracking Transformer Long-term live imaging, cell identifica- tion and cell tracking in regenerating crustacean legs.eLife, 14:RP107534, 2025

Reference 11

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Observation 22baf459-2550-420e-86d6-926345027836 · outbound

This paper cites Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.Science, 346 (6208):1257998, 2014.

Higher-Order Cell Tracking Transformer Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.Science, 346 (6208):1257998, 2014

Reference 12

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Observation 10d03cc7-291a-4d73-8f77-daebfc77aaf2 · outbound

This paper cites MOT20: A benchmark for multi object tracking in crowded scenes.

Higher-Order Cell Tracking Transformer MOT20: A benchmark for multi object tracking in crowded scenes

Reference 13

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Observation cbf307a8-806c-49d9-bc19-f11b5ee0f762 · outbound

This paper cites TrackTour, 2025.

Higher-Order Cell Tracking Transformer TrackTour, 2025

Reference 14

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Observation f8cc7d55-8cc4-47d1-8e1e-26633d01b81c · outbound

This paper cites Optical pooled screens in human cells.

Higher-Order Cell Tracking Transformer Optical pooled screens in human cells

Reference 15

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Observation eea3d5a7-d3ef-4606-af1a-95c5656290e4 · outbound

This paper cites Trackastra: Transformer-based cell tracking for live-cell microscopy.

Higher-Order Cell Tracking Transformer Trackastra: Transformer-based cell tracking for live-cell microscopy

Reference 16

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Observation 83746ae9-9506-4383-83ad-98ee97e90d63 · outbound

This paper cites Trackastra: code and pretrained weights, 2024.

Higher-Order Cell Tracking Transformer Trackastra: code and pretrained weights, 2024

Reference 17

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Observation e30dcade-9c58-4dcd-854d-d01224296ef0 · outbound

This paper cites ASCENT: Annotation-free self-supervised contrastive embeddings for 3d neuron tracking in fluorescence microscopy.

Higher-Order Cell Tracking Transformer ASCENT: Annotation-free self-supervised contrastive embeddings for 3d neuron tracking in fluorescence microscopy

Reference 18

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Observation 0f828d65-92a6-423a-9a86-9871d10f6464 · outbound

This paper cites Mpm: Joint representation of motion and position map for cell tracking.

Higher-Order Cell Tracking Transformer Mpm: Joint representation of motion and position map for cell tracking

Reference 19

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Observation a69b9278-b918-4c7a-9d2d-c15a77bf0a07 · outbound

This paper cites Rotary position embedding for vision transformer.

Higher-Order Cell Tracking Transformer Rotary position embedding for vision transformer

Reference 20

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Observation 3cd0dda0-959a-4b86-97ed-34afa3ab68c9 · outbound

This paper cites Micrographia.

Higher-Order Cell Tracking Transformer Micrographia

Reference 21

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Observation 86bf98d5-b7f7-4fe2-b509-7f2f5f535ce5 · outbound

This paper cites LoRA: Low-rank adaptation of large language models.

Higher-Order Cell Tracking Transformer LoRA: Low-rank adaptation of large language models

Reference 22

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Observation c7eb6b1f-4bb7-4584-ad64-0fccfb9637ee · outbound

This paper cites Robust single-particle tracking in live-cell time-lapse sequences.

Higher-Order Cell Tracking Transformer Robust single-particle tracking in live-cell time-lapse sequences

Reference 23

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Observation ceb4d28c-0b4c-4291-ab31-ce373b26d6b6 · outbound

This paper cites Muon: An optimizer for hidden layers in neural networks, 2024.

Higher-Order Cell Tracking Transformer Muon: An optimizer for hidden layers in neural networks, 2024

Reference 24

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Observation a7c7dea9-4c4a-42ef-8f26-f1d383deb3b1 · outbound

This paper cites Cell tracking according to biolog- ical needs-strong mitosis-aware multi-hypothesis tracker with aleatoric uncertainty.IEEE Transactions on Medical Imaging, 2025.

Higher-Order Cell Tracking Transformer Cell tracking according to biolog- ical needs-strong mitosis-aware multi-hypothesis tracker with aleatoric uncertainty.IEEE Transactions on Medical Imaging, 2025

Reference 25

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Observation 2a7049a1-79de-4bf7-95df-97f0feb87c05 · outbound

This paper cites Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.Science, 322 (5904):1065–1069, 2008.

Higher-Order Cell Tracking Transformer Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.Science, 322 (5904):1065–1069, 2008

Reference 26

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Observation f55297de-0e8c-4fcb-a1ae-388a129f9979 · outbound

This paper cites The hungarian method for the assignment problem.Naval research logistics quarterly, 2(1-2):83–97, 1955.

Higher-Order Cell Tracking Transformer The hungarian method for the assignment problem.Naval research logistics quarterly, 2(1-2):83–97, 1955

Reference 27

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Observation 54d5cb3d-7535-4145-a8ae-f18f2e38ab1e · outbound

This paper cites Attrackt, 2025.

Higher-Order Cell Tracking Transformer Attrackt, 2025

Reference 28

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Observation 0241487c-b31e-481a-b955-5172e04f22be · outbound

This paper cites Attrackt experiments, 2025.

Higher-Order Cell Tracking Transformer Attrackt experiments, 2025

Reference 29

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Observation e066747b-8b5a-4ef1-8195-c393310566aa · outbound

This paper cites An investigation of unsupervised cell tracking and interactive fine- tuning.

Higher-Order Cell Tracking Transformer An investigation of unsupervised cell tracking and interactive fine- tuning

Reference 30

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Observation 0a4d9392-980f-40b9-b219-ed7db043871a · outbound

This paper cites A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors.Cell, 187(23):6742–6759, 2024.

Higher-Order Cell Tracking Transformer A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors.Cell, 187(23):6742–6759, 2024

Reference 31

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Observation 5292a0ab-15da-4463-8582-c6705eae35f0 · outbound

This paper cites Focal loss for dense object detection.

Higher-Order Cell Tracking Transformer Focal loss for dense object detection

Reference 32

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Observation 787e8ea6-038b-4c4d-b062-59a4d91a806b · outbound

This paper cites Rethinking RoPE: A Mathematical Blueprint for N-dimensional Positional Embedding.

Higher-Order Cell Tracking Transformer Rethinking RoPE: A Mathematical Blueprint for N-dimensional Positional Embedding

Reference 33

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Observation e57b4df8-d7b3-4c59-910a-cf78fe37bbd7 · outbound

This paper cites PhD thesis, KTH Royal Institute of Technology, 2016.

Higher-Order Cell Tracking Transformer PhD thesis, KTH Royal Institute of Technology, 2016

Reference 34

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Observation 752841ea-7883-4347-8e5c-b5a100df37f6 · outbound

This paper cites Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.Nature Biotechnology, pages 1–6, 2022.

Higher-Order Cell Tracking Transformer Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.Nature Biotechnology, pages 1–6, 2022

Reference 35

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Observation b3d834f3-d04d-44f0-8b31-bb11eece0432 · outbound

This paper cites The cell tracking challenge: 10 years of objective benchmarking.Nature Methods, pages 1–11, 2023.

Higher-Order Cell Tracking Transformer The cell tracking challenge: 10 years of objective benchmarking.Nature Methods, pages 1–11, 2023

Reference 36

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Observation 53ac54a1-c98d-437d-9d2e-909a7425e00e · outbound

This paper cites Cell tracking accuracy measurement based on comparison of acyclic oriented graphs.PloS one, 10(12):e0144959, 2015.

Higher-Order Cell Tracking Transformer Cell tracking accuracy measurement based on comparison of acyclic oriented graphs.PloS one, 10(12):e0144959, 2015

Reference 37

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Observation 489e329a-c371-4698-9a7f-2b308efd038d · outbound

This paper cites Track- former: Multi-object tracking with transformers.

Higher-Order Cell Tracking Transformer Track- former: Multi-object tracking with transformers

Reference 38

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Observation 76df730b-5205-42d1-b6a5-b4be0e174bb3 · outbound

This paper cites Quasi- dense similarity learning for multiple object tracking.

Higher-Order Cell Tracking Transformer Quasi- dense similarity learning for multiple object tracking

Reference 39

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Observation d024cbcc-029c-44d2-adba-ee9905bfcc3b · outbound

This paper cites Geometric deep learning reveals the spatiotemporal features of microscopic motion.

Higher-Order Cell Tracking Transformer Geometric deep learning reveals the spatiotemporal features of microscopic motion

Reference 40

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Observation 4568d726-287d-41e6-9494-e470ca4894ad · outbound

This paper cites A critical look at the evaluation of GNNs under heterophily: Are we re- ally making progress? InInternational Conference on Learning Representations, 2023.

Higher-Order Cell Tracking Transformer A critical look at the evaluation of GNNs under heterophily: Are we re- ally making progress? InInternational Conference on Learning Representations, 2023

Reference 41

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Observation 16d18202-fbbc-44cf-92ff-589eed557bd8 · outbound

This paper cites Needles in the haystack-rapid error detection for cell tracking solutions.

Higher-Order Cell Tracking Transformer Needles in the haystack-rapid error detection for cell tracking solutions

Reference 42

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Observation 651f180f-6528-4db2-9654-47a0eeded357 · outbound

This paper cites Gated Attention for Large Language Models: Non-linearity, Sparsity, and Attention-Sink-Free.

Higher-Order Cell Tracking Transformer Gated Attention for Large Language Models: Non-linearity, Sparsity, and Attention-Sink-Free

Reference 43

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Observation 020e67c3-aa55-4324-96f0-e07ab1e43956 · outbound

This paper cites Particle tracking in biological images with optical-flow enhanced kalman filtering.

Higher-Order Cell Tracking Transformer Particle tracking in biological images with optical-flow enhanced kalman filtering

Reference 44

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Observation bac21764-990e-4dbb-a763-d068e1a822cb · outbound

This paper cites Pathfinder discovery networks for neural message passing.

Higher-Order Cell Tracking Transformer Pathfinder discovery networks for neural message passing

Reference 45

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Observation c7fba166-8bb3-4f08-9c49-54ccef75f768 · outbound

This paper cites Conservation tracking.

Higher-Order Cell Tracking Transformer Conservation tracking

Reference 46

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Observation b9585e0f-5c69-491f-83e9-1b3d65f0785c · outbound

This paper cites Smart lattice light-sheet microscopy for imaging rare and complex cellular events.Nature Methods, pages 1–10, 2024.

Higher-Order Cell Tracking Transformer Smart lattice light-sheet microscopy for imaging rare and complex cellular events.Nature Methods, pages 1–10, 2024

Reference 47

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Observation ef34bf39-9e1f-4426-a529-fcd7e27669b7 · outbound

This paper cites Roformer: Enhanced transformer with rotary position embedding.Neurocomputing, 568:127063, 2024.

Higher-Order Cell Tracking Transformer Roformer: Enhanced transformer with rotary position embedding.Neurocomputing, 568:127063, 2024

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Observation 1a1165b9-f5f2-4ea4-a542-5dfe1f006e36 · outbound

This paper cites Tracking cell lineages in 3d by incremental deep learning.eLife, 11:e69380, 2022.

Higher-Order Cell Tracking Transformer Tracking cell lineages in 3d by incremental deep learning.eLife, 11:e69380, 2022

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Observation bb1b34c6-e55e-4103-a7b5-98356d5848c0 · outbound

This paper cites Network flow integer programming to track elliptical cells in time-lapse sequences.IEEE Transactions on Medical Imaging, 36(4):942–951, 2016.

Higher-Order Cell Tracking Transformer Network flow integer programming to track elliptical cells in time-lapse sequences.IEEE Transactions on Medical Imaging, 36(4):942–951, 2016

Reference 50

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Observation dee303c6-efff-46ca-b972-3ea0bea32646 · outbound

This paper cites An objective comparison of cell-tracking algorithms.Nature Methods, 14(12):1141–1152, 2017.

Higher-Order Cell Tracking Transformer An objective comparison of cell-tracking algorithms.Nature Methods, 14(12):1141–1152, 2017

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Observation f4ad0c81-3728-4a15-88d6-0da83f6de204 · outbound

This paper cites Attention is all you need.Advances in Neural Information Processing Systems, 30, 2017.

Higher-Order Cell Tracking Transformer Attention is all you need.Advances in Neural Information Processing Systems, 30, 2017

Reference 52

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Observation 28770c55-9b6f-44ee-80cd-f431529335aa · outbound

This paper cites Graph attention networks.

Higher-Order Cell Tracking Transformer Graph attention networks

Reference 53

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Observation bf25c92e-b562-4ce4-8475-593976c9f8f4 · outbound

This paper cites Sam-med3d: a vision foundation model for general-purpose segmentation on volumetric medical images.IEEE Transactions on Neural Networks and Learning Systems, 2025.

Higher-Order Cell Tracking Transformer Sam-med3d: a vision foundation model for general-purpose segmentation on volumetric medical images.IEEE Transactions on Neural Networks and Learning Systems, 2025

Reference 54

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Observation 87f3224e-dce3-434c-afbb-fee5116b3c44 · outbound

This paper cites Simple online and realtime tracking with a deep association metric.

Higher-Order Cell Tracking Transformer Simple online and realtime tracking with a deep association metric

Reference 55

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Observation b0642aee-90e1-4f39-b7d5-b10b771df8d0 · outbound

This paper cites Daxi—high-resolution, large imaging volume and multi-view single-objective light-sheet mi- croscopy.Nature Methods, 19(4):461–469, 2022.

Higher-Order Cell Tracking Transformer Daxi—high-resolution, large imaging volume and multi-view single-objective light-sheet mi- croscopy.Nature Methods, 19(4):461–469, 2022

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Observation c3d2ec6a-e488-424e-a40c-09ef6db1f281 · outbound

This paper cites Global data association for multi-object tracking using network flows.

Higher-Order Cell Tracking Transformer Global data association for multi-object tracking using network flows

Reference 57

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Observation b02829d2-6701-4bbe-8fbe-b19e2d92a710 · outbound

This paper cites ByteTrack: Multi-object tracking by associating every detection box.

Higher-Order Cell Tracking Transformer ByteTrack: Multi-object tracking by associating every detection box

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Observation 5dcc6930-304f-48ad-b9df-a4841f61178d · outbound

This paper cites Graph Neural Networks for Graphs with Heterophily: A Survey.

Higher-Order Cell Tracking Transformer Graph Neural Networks for Graphs with Heterophily: A Survey

Reference 59

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Observation 9f8c82fc-a937-4b5e-8b3e-1a23cb08cf70 · outbound

This paper cites CELLECT: contrastive embedding learning for large-scale efficient cell tracking.Nature Methods, pages 1–12, 2025.

Higher-Order Cell Tracking Transformer CELLECT: contrastive embedding learning for large-scale efficient cell tracking.Nature Methods, pages 1–12, 2025

Reference 60

Resolution: unresolved; no resolver link, observed 2026-07-14T03:25:28.859078Z

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Observation f70d7243-60fe-446a-8cc6-06163f1f305f · outbound

This paper cites Medical SAM 2: Segment medical images as video via Segment Anything Model 2.

Higher-Order Cell Tracking Transformer Medical SAM 2: Segment medical images as video via Segment Anything Model 2

Reference 61

Resolution: unresolved; no resolver link, observed 2026-07-14T03:25:28.859078Z

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Observation d8065adb-6602-44b0-82be-0c8855b3b6f0 · outbound

This paper cites MLP_E”/“MLP_D.

Higher-Order Cell Tracking Transformer MLP_E”/“MLP_D

Reference 62

Resolution: malformed identifier; no resolver link, observed 2026-07-14T03:25:28.859078Z

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Observation 0c103862-90a8-4a58-a25f-5932da13cd96 · outbound

This paper cites Guidelines: • The answer [N/A] means that the paper does not involve crowdsourcing nor research with human subjects.

Higher-Order Cell Tracking Transformer Guidelines: • The answer [N/A] means that the paper does not involve crowdsourcing nor research with human subjects

Reference 63

Resolution: unresolved; no resolver link, observed 2026-07-14T03:25:28.859078Z

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Unavailable: canonical work link unavailable.

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