Paper Citation Record · LEDGER

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure

As of 11 August 2026, this Paper Citation Record lists 35 of 35 outbound references and 0 inbound Pith citation observations for arXiv:2502.06846.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2502.06846 v2

Coverage vector

measured 35 of 35 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-08T22:00:02.204951Z

measured 35 of 35 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-11T06:34:44.6726+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

35 of 35 outbound references displayed

verified exact0
verified fuzzy16
unresolved19
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation a54301d5-c3c6-469f-b0df-89d4b32894f3 · outbound

This paper cites Prot2text: Multimodal protein’s function generation with gnns and transformers.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Prot2text: Multimodal protein’s function generation with gnns and transformers

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.684008Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e48b7ce4-0d51-453a-8d99-99caa0fc9ae4 · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.063488Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 37702666-8ce9-4647-bda4-d7f84163d5fb · outbound

This paper cites Protnote: a multimodal method for protein-function annotation.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Protnote: a multimodal method for protein-function annotation

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.660312Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 28d8fe96-a513-477f-b2f9-84ed4ba32615 · outbound

This paper cites Robust deep learning–based protein sequence design using proteinmpnn.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Robust deep learning–based protein sequence design using proteinmpnn

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.072853Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 04509ddc-69b3-4cf7-9f9f-b2c169eabba5 · outbound

This paper cites PaLM-E: An Embodied Multimodal Language Model.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure PaLM-E: An Embodied Multimodal Language Model

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.077334Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 01baf7e4-e3fe-44f0-800b-a81d40d568b8 · outbound

This paper cites The Llama 3 Herd of Models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure The Llama 3 Herd of Models

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.082329Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ebc88c41-5d7b-450f-a7c7-1205c019efee · outbound

This paper cites MolTC: Towards Molecular Relational Modeling In Language Models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure MolTC: Towards Molecular Relational Modeling In Language Models

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.087665Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 84106ae6-4b85-4710-8c3a-d2fbcdee9e12 · outbound

This paper cites Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.092122Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation ebf2a336-1650-4ad2-b4b9-3d5d7a75f641 · outbound

This paper cites Structure-based protein function prediction using graph convolutional networks.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Structure-based protein function prediction using graph convolutional networks

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.636446Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 368bcfff-0d35-4b1e-894d-0f169f0eb843 · outbound

This paper cites LoRA: Low-rank adaptation of large language models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure LoRA: Low-rank adaptation of large language models

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.622255Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation a0e1ed3a-417a-44f8-8858-612a5a748de7 · outbound

This paper cites Deepgoplus: improved protein function prediction from sequence.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Deepgoplus: improved protein function prediction from sequence

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.607797Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e974c0b2-4b30-4fbd-954e-ceba682c7e34 · outbound

This paper cites Blip-2: Bootstrapping language-image pre-training with frozen image encoders and large language models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Blip-2: Bootstrapping language-image pre-training with frozen image encoders and large language models

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.109119Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 92065abc-74ae-4b10-ac4a-d071bd8ff6fe · outbound

This paper cites ROUGE: A package for automatic evaluation of summaries.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure ROUGE: A package for automatic evaluation of summaries

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.113001Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 07034fa7-e6ff-4ffa-a47a-13f8bc3b3300 · outbound

This paper cites Language models of protein sequences at the scale of evolution enable accurate structure prediction.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Language models of protein sequences at the scale of evolution enable accurate structure prediction

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.575653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 6d68effc-06c3-46a2-80c5-254d3ce50af8 · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.120751Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fccd4685-5b27-4fb8-bf9a-46bd3fd2f399 · outbound

This paper cites BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine

Reference 16

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.124477Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 73ecf23a-b354-4599-b8f9-848ec14743a3 · outbound

This paper cites Macaw-LLM: Multi-Modal Language Modeling with Image, Audio, Video, and Text Integration.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Macaw-LLM: Multi-Modal Language Modeling with Image, Audio, Video, and Text Integration

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.128524Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d2cd428f-c2d7-4e26-b69c-dcc9872d042d · outbound

This paper cites Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.551773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 1e60f37f-51a6-4939-ba40-33e732c55514 · outbound

This paper cites Bleu: a method for automatic evaluation of machine translation.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Bleu: a method for automatic evaluation of machine translation

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.537685Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation be9e9360-04a5-496a-85b6-2902e4d5f380 · outbound

This paper cites Mooncake: A KVCache-centric Disaggregated Architecture for LLM Serving.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Mooncake: A KVCache-centric Disaggregated Architecture for LLM Serving

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.145553Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e40e753d-d2d6-46cc-bd3c-499151eda8ff · outbound

This paper cites Instructplm: Aligning protein language models to follow protein structure instructions.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Instructplm: Aligning protein language models to follow protein structure instructions

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.512851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e1f8df38-cb32-435b-afe0-266d6b03d7b4 · outbound

This paper cites Funcfetch: an llm-assisted workflow enables mining thousands of enzyme–substrate interactions from published manuscripts.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Funcfetch: an llm-assisted workflow enables mining thousands of enzyme–substrate interactions from published manuscripts

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.499196Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation ae10d785-f5c4-4432-bf8e-26ecf99555bf · outbound

This paper cites Saprot: Protein language modeling with structure-aware vocabulary.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Saprot: Protein language modeling with structure-aware vocabulary

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.484728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e80812d4-aee8-48d1-b7d7-488d69b7507c · outbound

This paper cites Galactica: A Large Language Model for Science.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Galactica: A Large Language Model for Science

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.162538Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation acc17836-9691-4c57-b713-ac3fb4a356b0 · outbound

This paper cites Uniprot: the universal protein knowledgebase.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Uniprot: the universal protein knowledgebase

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.471289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 8743a60b-475a-4bdd-9194-de527a95232f · outbound

This paper cites Foldseek: fast and accurate protein structure search.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Foldseek: fast and accurate protein structure search

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.458218Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation ce28efe9-4b6b-4eba-a4dc-7b81d85048c6 · outbound

This paper cites Attention is all you need.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Attention is all you need

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.175221Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 23c6492c-8145-4615-bef1-ec9a78220976 · outbound

This paper cites ProtChatGPT: Towards Understanding Proteins with Large Language Models.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure ProtChatGPT: Towards Understanding Proteins with Large Language Models

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.179368Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 92ca360c-d382-46ea-8f1d-bdef5068a9be · outbound

This paper cites InstructProtein: Aligning Human and Protein Language via Knowledge Instruction.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure InstructProtein: Aligning Human and Protein Language via Knowledge Instruction

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.183604Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3dfe29af-ebdc-4ff4-a50c-7a45c868178e · outbound

This paper cites Predicting multiple conformations via sequence clustering and alphafold2.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Predicting multiple conformations via sequence clustering and alphafold2

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.436050Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation e990245d-5d28-4724-897c-f852601d0ae3 · outbound

This paper cites Fapm: Functional annotation of proteins using multi-modal models beyond structural modeling.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Fapm: Functional annotation of proteins using multi-modal models beyond structural modeling

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.422030Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation db5e3296-ad82-4890-aba1-6f210a7d0448 · outbound

This paper cites Video-LLaMA: An Instruction-tuned Audio-Visual Language Model for Video Understanding.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Video-LLaMA: An Instruction-tuned Audio-Visual Language Model for Video Understanding

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.196095Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c60352af-4d93-4e04-a440-244cf2bbab5d · outbound

This paper cites A Survey of Large Language Models in Medicine: Progress, Application, and Challenge.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure A Survey of Large Language Models in Medicine: Progress, Application, and Challenge

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.200645Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0d28622b-d462-40e0-8d5d-a7c13725e33b · outbound

This paper cites Decoding the molecular language of proteins with evola.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Decoding the molecular language of proteins with evola

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T22:00:02.407096Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation 79ded4ce-3c4f-4b8b-8c6d-29ec2824ee2b · outbound

This paper cites an unresolved cited work.

Prot2Chat: Protein LLM with Early-Fusion of Text, Sequence and Structure Unresolved cited work

Reference 2002

Resolution: unresolved; no resolver link, observed 2026-08-08T22:00:02.141132Z

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Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.