Paper Citation Record · LEDGER

From Sentences to Sequences: Rethinking Languages in Biological System

As of 13 August 2026, this Paper Citation Record lists 48 of 48 outbound references and 1 inbound Pith citation observation for arXiv:2507.00953.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.00953 v2

Coverage vector

measured 48 of 48 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T21:08:07.221160Z

measured 49 of 49 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-05-15T21:19:42.646494Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-15T21:20:18.420974Z

Reference resolution

48 of 48 outbound references displayed

verified exact1
verified fuzzy1
unresolved46
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 712ddebe-de58-4757-b421-deae9deb1cd0 · outbound

This paper cites GPT-4 Technical Report.

From Sentences to Sequences: Rethinking Languages in Biological System GPT-4 Technical Report

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.084523Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 358edf67-7341-4a2e-80b2-b154862c1001 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 2

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.655070Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 50966b7e-3596-41b3-a2d8-99bb43ec2c4f · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.094316Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fad392b6-2a28-40af-917e-6872e1b9807c · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 4

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.638788Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 134b54ed-eb90-4b37-9f30-ae3100bea303 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.100880Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8f76d007-2066-4535-b2ea-165cfbdfe1be · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.623806Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation b568de69-a71a-49c0-8dbd-a2740aba841e · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.614792Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3cbe1e08-25f4-4993-91d9-bbd3cc71009f · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.109930Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9c7cb844-ea60-4ff6-8f53-7a1bd63443aa · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.598858Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 6f590158-b0ca-4ea6-b1ad-82197100ed67 · outbound

This paper cites AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB.

From Sentences to Sequences: Rethinking Languages in Biological System AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.115022Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e936cbe3-e719-43f8-a291-ebeccd1c9e2b · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 11

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.588793Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c6fa4421-b909-4fcc-90c9-e52cd3ebbb87 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.578898Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 849be0c3-5e92-4d91-a6dc-5d721b81bd57 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 13

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.568804Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 0ca47e62-c26b-496d-be37-14287312dc43 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 14

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.559505Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e6658a70-d823-4f5b-9ddf-f12b79ac590f · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 15

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.550020Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8d9fa84f-e6a5-4582-afb9-3271727ec731 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.541075Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3bc6e3e2-7c03-4d77-9cf6-f6c8084af04b · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.134525Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fdbd64d6-e844-4a79-812d-af7ba2e66b22 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 18

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.524905Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9e4780ee-0ced-4718-951f-c1f937bb8161 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 19

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.515902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 414ee81c-6fe0-4fdb-b69e-ccc4c6a16696 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 20

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.505788Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e1e5216c-a17d-4f63-a539-7223a140d83d · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 21

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.496651Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3fc9b4a5-496e-45cd-a924-05c7b3906b80 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.148466Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c32e0493-3acc-42d8-9954-ebccdd861a76 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 23

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.481952Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8d0b424b-4237-4987-ac0a-1f7a77b259d7 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 24

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.473444Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 252d1b47-6900-4104-8c85-e6c52ceab963 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 25

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.464732Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 92658b01-a59e-4730-b1a2-77401b06de95 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.158713Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a084d9db-a7bf-40fa-be30-60f5a9fe1586 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 27

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.448908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 71852f8f-d066-434f-9074-bc3bec191381 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.165157Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6e2847e8-28af-45d1-b054-585176547eb8 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 29

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.433657Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9e3e4fa4-13ea-4990-af6d-c0e32e2427b1 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.170312Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d157eff6-d703-41cf-92e9-88532c35aac9 · outbound

This paper cites COMET: A Neural Framework for MT Evaluation.

From Sentences to Sequences: Rethinking Languages in Biological System COMET: A Neural Framework for MT Evaluation

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.173495Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 44af47f6-b03a-4f8c-8fa5-39048c79f38a · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 32

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.418788Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 71d28912-fa91-47ec-93f9-323d9a85964a · outbound

This paper cites Learning to Design RNA.

From Sentences to Sequences: Rethinking Languages in Biological System Learning to Design RNA

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.179712Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 22b70ede-043b-4926-b162-ae77ecb28ed4 · outbound

This paper cites Accurate RNA 3D structure prediction using a language model-based deep learning approach.

From Sentences to Sequences: Rethinking Languages in Biological System Accurate RNA 3D structure prediction using a language model-based deep learning approach

Reference 34

Resolution: verified exact; local_arxiv, observed 2026-08-06T21:08:07.264547Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 82414012-1129-42af-b35c-ece146a08a30 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.185957Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 68449e77-d29d-4ffb-a89c-6e36e02ba3fb · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 36

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.401300Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 925d53b1-4cb9-40a3-b94c-be8d6449191b · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 37

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.392815Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e60da0fa-bddc-428a-9020-89806c52de33 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 38

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.384594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 8c7274f8-e8bf-4217-ae6b-3586fa99f963 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 39

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.375251Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 03433d1b-bb7f-43e5-84b5-6513e581e8e0 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 40

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.366252Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation e3bc292d-a111-4bbe-931a-f0ce1b7ae12f · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.201969Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1be51133-53c9-4f90-b6f5-4c28b75075c1 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.351941Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation f311a162-1998-4730-9a6e-fa092b4679b5 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 43

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.343024Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation acc62434-dc1d-4956-a4e6-49dd37cdbf78 · outbound

This paper cites Trippe, Valentin De Bortoli, Emile Mathieu, Arnaud Doucet, Regina Barzilay, and Tommi Jaakkola.

From Sentences to Sequences: Rethinking Languages in Biological System Trippe, Valentin De Bortoli, Emile Mathieu, Arnaud Doucet, Regina Barzilay, and Tommi Jaakkola

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T21:08:07.334013Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d9c540a5-c951-47a7-b0fa-09e18094e878 · outbound

This paper cites BERTScore: Evaluating Text Generation with BERT.

From Sentences to Sequences: Rethinking Languages in Biological System BERTScore: Evaluating Text Generation with BERT

Reference 45

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.212609Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 23e5e199-2dc8-4e96-9b43-6f1cb573d8a9 · outbound

This paper cites an unresolved cited work.

From Sentences to Sequences: Rethinking Languages in Biological System Unresolved cited work

Reference 46

Resolution: unresolved; raw_fallback, observed 2026-08-06T21:08:07.324325Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation c7e3ccf6-1210-4384-85be-b2b36201562f · outbound

This paper cites online" 'onlinestring :=.

From Sentences to Sequences: Rethinking Languages in Biological System online" 'onlinestring :=

Reference 47

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.218075Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bbde4fc6-4564-4c83-a3ac-ae0058f39450 · outbound

This paper cites write newline.

From Sentences to Sequences: Rethinking Languages in Biological System write newline

Reference 48

Resolution: unresolved; no resolver link, observed 2026-08-06T21:08:07.221160Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation de6cc053-a74a-4e3d-a2aa-e888ad4c5351 · inbound

RIDER: 3D RNA Inverse Design with Reinforcement Learning-Guided Diffusion cites this paper.

RIDER: 3D RNA Inverse Design with Reinforcement Learning-Guided Diffusion From Sentences to Sequences: Rethinking Languages in Biological System

Reference 31

Resolution: verified exact; arxiv_id, observed 2026-05-15T21:20:18.422835Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.