Paper Citation Record · LEDGER

Protein Inverse Folding From Structure Feedback

As of 9 August 2026, this Paper Citation Record lists 52 of 52 outbound references and 2 inbound Pith citation observations for arXiv:2506.03028.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.03028 v1

Coverage vector

measured 52 of 52 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T11:17:59.186808Z

measured 54 of 54 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-29T19:24:06.143427Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-06-29T19:33:54.336469Z

Reference resolution

52 of 52 outbound references displayed

verified exact0
verified fuzzy20
unresolved32
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation a237368f-c3dc-4f6f-98ad-1371a4b3affa · outbound

This paper cites GPT-4 Technical Report.

Protein Inverse Folding From Structure Feedback GPT-4 Technical Report

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.177559Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b5091f3a-cce2-4b00-9776-119fb3b5c548 · outbound

This paper cites Computational protein design.Nature Reviews Methods Primers, 5(1):13, 2025.

Protein Inverse Folding From Structure Feedback Computational protein design.Nature Reviews Methods Primers, 5(1):13, 2025

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.227970Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b8f4e25e-0561-40a7-969c-33916a000108 · outbound

This paper cites Constitutional AI: Harmlessness from AI Feedback.

Protein Inverse Folding From Structure Feedback Constitutional AI: Harmlessness from AI Feedback

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.305489Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 401132e7-4fe5-4d7f-b8d0-c9895d478b94 · outbound

This paper cites Hallucination of Multimodal Large Language Models: A Survey.

Protein Inverse Folding From Structure Feedback Hallucination of Multimodal Large Language Models: A Survey

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.391438Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8a5f7599-197b-4d57-b902-29472341de11 · outbound

This paper cites Scaling unlocks broader generation and deeper functional understanding of proteins.bioRxiv, pages 2025–04, 2025.

Protein Inverse Folding From Structure Feedback Scaling unlocks broader generation and deeper functional understanding of proteins.bioRxiv, pages 2025–04, 2025

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:03.104635Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 89e1bddb-4594-4547-a8e0-7608769a9314 · outbound

This paper cites Self-Play Fine-Tuning Converts Weak Language Models to Strong Language Models.

Protein Inverse Folding From Structure Feedback Self-Play Fine-Tuning Converts Weak Language Models to Strong Language Models

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.551917Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 231fa083-20e0-45e4-96f0-ec7495f687a4 · outbound

This paper cites Deep reinforcement learning from human preferences.Advances in neural information processing systems, 30, 2017.

Protein Inverse Folding From Structure Feedback Deep reinforcement learning from human preferences.Advances in neural information processing systems, 30, 2017

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.617430Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cec4f920-d66e-402d-9aaa-e24096de368d · outbound

This paper cites Group equivariant convolutional networks.

Protein Inverse Folding From Structure Feedback Group equivariant convolutional networks

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.706021Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2c3ed035-ceb5-41ad-b3c6-71352d17dcf1 · outbound

This paper cites Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022.

Protein Inverse Folding From Structure Feedback Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:55.772670Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a2d6ecb5-271d-4879-8ee4-b10336a96717 · outbound

This paper cites Atomic context-conditioned protein sequence design using ligandmpnn.Nature Methods, pages 1–7, 2025.

Protein Inverse Folding From Structure Feedback Atomic context-conditioned protein sequence design using ligandmpnn.Nature Methods, pages 1–7, 2025

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:02.927149Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 7afdcb78-bc02-4299-9dda-001fecf78235 · outbound

This paper cites Amino acid pairing at the n-and c- termini of helical segments in proteins.PROTEINS: Structure, Function, and Bioinformatics, 70(1):188–196, 2008.

Protein Inverse Folding From Structure Feedback Amino acid pairing at the n-and c- termini of helical segments in proteins.PROTEINS: Structure, Function, and Bioinformatics, 70(1):188–196, 2008

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:02.771711Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 2d7f297e-fc9e-4316-84a6-c857064c9f89 · outbound

This paper cites an unresolved cited work.

Protein Inverse Folding From Structure Feedback Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-07T11:18:02.597468Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b43ae5ae-8590-486f-bc80-b82e418cb340 · outbound

This paper cites AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB.

Protein Inverse Folding From Structure Feedback AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.078901Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 957fae3e-b30f-4dec-89cb-8b55eebdda22 · outbound

This paper cites Pifold: Toward effective and efficient protein inverse folding, 2022.

Protein Inverse Folding From Structure Feedback Pifold: Toward effective and efficient protein inverse folding, 2022

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:02.445551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0238af73-7630-42a5-8a6a-976c2e15feca · outbound

This paper cites Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025.

Protein Inverse Folding From Structure Feedback Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:02.262861Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 408e0b2c-8283-4fe4-aaf2-eec29c5dd3ac · outbound

This paper cites Learning inverse folding from millions of predicted structures.International Conference on Machine Learning, pages 8946–8970, 2022.

Protein Inverse Folding From Structure Feedback Learning inverse folding from millions of predicted structures.International Conference on Machine Learning, pages 8946–8970, 2022

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:02.117858Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 80445534-fd49-4490-8624-ba191895f589 · outbound

This paper cites LoRA: Low-Rank Adaptation of Large Language Models.

Protein Inverse Folding From Structure Feedback LoRA: Low-Rank Adaptation of Large Language Models

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.379168Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 86730007-f927-4b20-951e-fb88f25738f7 · outbound

This paper cites Generative models for graph-based protein design.Advances in neural information processing systems, 32, 2019.

Protein Inverse Folding From Structure Feedback Generative models for graph-based protein design.Advances in neural information processing systems, 32, 2019

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.944960Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a13f5f3e-4d45-480b-99a9-f3f809620dba · outbound

This paper cites Learning from Protein Structure with Geometric Vector Perceptrons.

Protein Inverse Folding From Structure Feedback Learning from Protein Structure with Geometric Vector Perceptrons

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.527823Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e7d6ab96-e2bf-4c49-aab6-b30d446611fb · outbound

This paper cites Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021.

Protein Inverse Folding From Structure Feedback Highly accurate protein structure prediction with alphafold.nature, 596(7873):583–589, 2021

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.616909Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 76f677cf-e6fe-466e-bd11-3df6e39a8b9b · outbound

This paper cites Sequence-similar, structure-dissimilar protein pairs in the pdb.Proteins: Structure, Function, and Bioinformatics, 71(2):891–902, 2008.

Protein Inverse Folding From Structure Feedback Sequence-similar, structure-dissimilar protein pairs in the pdb.Proteins: Structure, Function, and Bioinformatics, 71(2):891–902, 2008

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.779398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation bf56e1c6-699b-44f0-a018-1337d2eeed83 · outbound

This paper cites Generalized biomolecular modeling and design with rosettafold all-atom.Science, 384(6693):eadl2528, 2024.

Protein Inverse Folding From Structure Feedback Generalized biomolecular modeling and design with rosettafold all-atom.Science, 384(6693):eadl2528, 2024

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.609739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5709edc7-c73e-4545-8937-cafd1620f817 · outbound

This paper cites RLAIF vs. RLHF: Scaling Reinforcement Learning from Human Feedback with AI Feedback.

Protein Inverse Folding From Structure Feedback RLAIF vs. RLHF: Scaling Reinforcement Learning from Human Feedback with AI Feedback

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.880188Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5f17e060-351c-49ac-ae42-6e813d47bdd8 · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.Science, 379(6637):1123–1130, 2023.

Protein Inverse Folding From Structure Feedback Evolutionary-scale prediction of atomic-level protein structure with a language model.Science, 379(6637):1123–1130, 2023

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:56.948792Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 220c083e-9415-48fa-9256-1a15d60487b8 · outbound

This paper cites Decoupled Weight Decay Regularization.

Protein Inverse Folding From Structure Feedback Decoupled Weight Decay Regularization

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.031779Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 372a1738-024d-4ffa-9184-691f8a377642 · outbound

This paper cites ProGen: Language Modeling for Protein Generation.

Protein Inverse Folding From Structure Feedback ProGen: Language Modeling for Protein Generation

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.085748Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dd6f3c4a-5664-4e10-ad90-3218ce638e9f · outbound

This paper cites Preference optimization of protein language models as a multi-objective binder design paradigm.

Protein Inverse Folding From Structure Feedback Preference optimization of protein language models as a multi-objective binder design paradigm

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.153314Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0979a9d2-a550-4b2d-ac7e-bb14e5a4af73 · outbound

This paper cites Conditional language models enable the efficient design of proficient enzymes.bioRxiv, pages 2024–05, 2024.

Protein Inverse Folding From Structure Feedback Conditional language models enable the efficient design of proficient enzymes.bioRxiv, pages 2024–05, 2024

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.251501Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 981b682a-c4bd-4556-90f9-3daf4f8d1653 · outbound

This paper cites Progen2: exploring the boundaries of protein language models.Cell systems, 14(11):968–978, 2023.

Protein Inverse Folding From Structure Feedback Progen2: exploring the boundaries of protein language models.Cell systems, 14(11):968–978, 2023

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.314563Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 318b1cae-1ac2-40a1-874d-071cde73eb75 · outbound

This paper cites Machine learning for functional protein design.Nature biotechnology, 42(2):216–228, 2024.

Protein Inverse Folding From Structure Feedback Machine learning for functional protein design.Nature biotechnology, 42(2):216–228, 2024

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.406134Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6e3cbfac-1a57-4a93-91ca-8c496c2f8392 · outbound

This paper cites Cath–a hierarchic classification of protein domain structures.Structure, 5(8):1093–1109, 1997.

Protein Inverse Folding From Structure Feedback Cath–a hierarchic classification of protein domain structures.Structure, 5(8):1093–1109, 1997

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.422053Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 24a2ba13-9c81-49db-a9fe-4bfb5b1cf783 · outbound

This paper cites Training language models to follow instructions with human feedback.Advances in neural information processing systems, 35:27730–27744, 2022.

Protein Inverse Folding From Structure Feedback Training language models to follow instructions with human feedback.Advances in neural information processing systems, 35:27730–27744, 2022

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.572516Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d014124a-1023-4ef2-ba8f-bc7a3f58ee55 · outbound

This paper cites Smaug: Fixing Failure Modes of Preference Optimisation with DPO-Positive.

Protein Inverse Folding From Structure Feedback Smaug: Fixing Failure Modes of Preference Optimisation with DPO-Positive

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.665206Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e53b7219-15a8-481a-85ba-3a1092245ebf · outbound

This paper cites Improving Inverse Folding for Peptide Design with Diversity-regularized Direct Preference Optimization.

Protein Inverse Folding From Structure Feedback Improving Inverse Folding for Peptide Design with Diversity-regularized Direct Preference Optimization

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.758486Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 727f96a7-5fbc-4298-afcf-5125164a1ec7 · outbound

This paper cites Instructplm: Aligning protein language models to follow protein structure instructions.bioRxiv, 2024.

Protein Inverse Folding From Structure Feedback Instructplm: Aligning protein language models to follow protein structure instructions.bioRxiv, 2024

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.268020Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4a81e4aa-b8f3-456e-b2e5-91e97b36c30d · outbound

This paper cites Direct preference optimization: Your language model is secretly a reward model.

Protein Inverse Folding From Structure Feedback Direct preference optimization: Your language model is secretly a reward model

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:57.918877Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 83497bc6-65f3-4750-a445-d787c1221e15 · outbound

This paper cites The use of alphafold for in silico exploration of drug targets in the parasite trypanosoma cruzi.Frontiers in Cellular and Infection Microbiology, 12:944748, 2022.

Protein Inverse Folding From Structure Feedback The use of alphafold for in silico exploration of drug targets in the parasite trypanosoma cruzi.Frontiers in Cellular and Infection Microbiology, 12:944748, 2022

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:01.125841Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 10abc6ac-3e88-423e-b5f9-3f1ab15822fe · outbound

This paper cites Ruffolo, Aadyot Bhatnagar, Joel Beazer, Stephen Nayfach, Jordan Russ, Emily Hill, Riffat Hussain, Joseph Gallagher, and Ali Madani.

Protein Inverse Folding From Structure Feedback Ruffolo, Aadyot Bhatnagar, Joel Beazer, Stephen Nayfach, Jordan Russ, Emily Hill, Riffat Hussain, Joseph Gallagher, and Ali Madani

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.923264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 72e98d4d-82d0-483e-bc63-c3d9323baa92 · outbound

This paper cites How good are alphafold models for docking-based virtual screening?Iscience, 26(1), 2023.

Protein Inverse Folding From Structure Feedback How good are alphafold models for docking-based virtual screening?Iscience, 26(1), 2023

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.752733Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation fface664-9ae0-4bf7-ac3b-af2f80cef8b7 · outbound

This paper cites Protein structure determination from pseudocontact shifts using rosetta.Journal of molecular biology, 416(5):668–677, 2012.

Protein Inverse Folding From Structure Feedback Protein structure determination from pseudocontact shifts using rosetta.Journal of molecular biology, 416(5):668–677, 2012

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.529053Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1e2addcd-c5e6-4190-9b40-ee2ffa611273 · outbound

This paper cites Proximal Policy Optimization Algorithms.

Protein Inverse Folding From Structure Feedback Proximal Policy Optimization Algorithms

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:58.268358Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 706359ab-2b7f-4a99-b1d1-503e42f9955c · outbound

This paper cites Surfing the biocatalysis wave to new applications changed to: From nature to industry: Harnessing enzymes for biocatalysis, as per request of editor.Science, 382(6673), 2023.

Protein Inverse Folding From Structure Feedback Surfing the biocatalysis wave to new applications changed to: From nature to industry: Harnessing enzymes for biocatalysis, as per request of editor.Science, 382(6673), 2023

Reference 42

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.371438Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation fb46b3b0-b517-4f76-aa01-04c2c04a32f0 · outbound

This paper cites Guiding generative protein language models with reinforcement learning.arXiv preprint arXiv:2412.12979, 2024.

Protein Inverse Folding From Structure Feedback Guiding generative protein language models with reinforcement learning.arXiv preprint arXiv:2412.12979, 2024

Reference 43

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:58.438688Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 097d2cb9-b09c-4bed-9c20-842eda91f8b1 · outbound

This paper cites Global-context aware generative protein design.ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pages 1–5, 2023.

Protein Inverse Folding From Structure Feedback Global-context aware generative protein design.ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pages 1–5, 2023

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.220585Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c8241400-b02e-4de3-83c4-9c5de6ce216c · outbound

This paper cites Evolution of function in protein superfamilies, from a structural perspective.Journal of molecular biology, 307(4):1113–1143, 2001.

Protein Inverse Folding From Structure Feedback Evolution of function in protein superfamilies, from a structural perspective.Journal of molecular biology, 307(4):1113–1143, 2001

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:18:00.037901Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 20f35fbd-d03d-4464-bb29-bf57eac41545 · outbound

This paper cites Aligning protein generative models with experimental fitness via direct preference optimization.bioRxiv, pages 2024–05, 2024.

Protein Inverse Folding From Structure Feedback Aligning protein generative models with experimental fitness via direct preference optimization.bioRxiv, pages 2024–05, 2024

Reference 46

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:58.708089Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 47629f9c-23b0-4da8-ae10-076002590dd1 · outbound

This paper cites Self-Play Preference Optimization for Language Model Alignment.

Protein Inverse Folding From Structure Feedback Self-Play Preference Optimization for Language Model Alignment

Reference 47

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:58.784540Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation acf8c93b-86b8-4615-9f4c-f733af0f1828 · outbound

This paper cites Hallucidoctor: Mitigating hallucinatory toxicity in visual instruction data.

Protein Inverse Folding From Structure Feedback Hallucidoctor: Mitigating hallucinatory toxicity in visual instruction data

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:17:59.875742Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 428f151d-ec4f-4261-a4ab-4c5b9d4a00e1 · outbound

This paper cites Self-Rewarding Language Models.

Protein Inverse Folding From Structure Feedback Self-Rewarding Language Models

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:58.950700Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3041aeaf-b5cd-407e-9074-4c096b6486fc · outbound

This paper cites Evaluating Large Language Models at Evaluating Instruction Following.

Protein Inverse Folding From Structure Feedback Evaluating Large Language Models at Evaluating Instruction Following

Reference 50

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:59.048163Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 122e65c8-fce2-4831-bcad-6c2e785256ee · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.Nucleic acids research, 33(7):2302–2309, 2005.

Protein Inverse Folding From Structure Feedback Tm-align: a protein structure alignment algorithm based on the tm-score.Nucleic acids research, 33(7):2302–2309, 2005

Reference 51

Resolution: unresolved; no resolver link, observed 2026-08-07T11:17:59.120417Z

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Observation 728a2f47-0012-4628-a268-56f3f1a211f5 · outbound

This paper cites Structure- informed language models are protein designers.bioRxiv, pages 2023–02, 2023.

Protein Inverse Folding From Structure Feedback Structure- informed language models are protein designers.bioRxiv, pages 2023–02, 2023

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:17:59.703009Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Pith citing papers

Observation b4f8d23a-44ce-4c20-8366-9f3d3100040c · inbound

GeoCycler: Reward-Aligned 3D Diffusion for Constraint-Conditioned Cyclic Peptide Design cites this paper.

GeoCycler: Reward-Aligned 3D Diffusion for Constraint-Conditioned Cyclic Peptide Design Protein Inverse Folding From Structure Feedback

Reference 80

Resolution: verified exact; arxiv_id, observed 2026-05-25T02:46:33.506301Z

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Observation dd8e39b2-0ab6-4627-9b02-f0e62241ec9d · inbound

SurfDesign: Effective Protein Design on Molecular Surfaces cites this paper.

SurfDesign: Effective Protein Design on Molecular Surfaces Protein Inverse Folding From Structure Feedback

Reference 87

Resolution: verified exact; arxiv_id, observed 2026-06-29T19:33:54.337926Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.