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Paper Citation Record · LEDGER

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners

As of 22 August 2026, this Paper Citation Record lists 100 of 300 outbound references and 0 inbound Pith citation observations for arXiv:2412.11137.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.11137 v1

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measured 100 of 300 reference resolution

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Pith citing papers itemized under the disclosed page cap.

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measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

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Reference resolution

100 of 300 outbound references displayed

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Outbound references

Observation a4130fb8-df86-468b-bc57-3d32e7db4f4d · outbound

This paper cites Chapter 30 - Drug Discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Chapter 30 - Drug Discovery,

Reference 1

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This paper cites Drug design—Past, present, future,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Drug design—Past, present, future,

Reference 2

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Observation 7f2c437b-de52-49e3-9fe3-d2685cc9ecfb · outbound

This paper cites Improving target assessment in biomedical research: the GOT-IT recommendaƟons,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Improving target assessment in biomedical research: the GOT-IT recommendaƟons,

Reference 3

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This paper cites Lead Discovery Using Virtual Screening,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Lead Discovery Using Virtual Screening,

Reference 4

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This paper cites Enhanced uƟlity of AI/ML methods during lead opƟmizaƟon by inclusion of 3D ligand informaƟon,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Enhanced uƟlity of AI/ML methods during lead opƟmizaƟon by inclusion of 3D ligand informaƟon,

Reference 5

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Observation 15f0c604-ba3c-4a75-87c6-ed352094b199 · outbound

This paper cites Chapter 1 - Drug Discovery and Development: An Overview of Modern Methods and Principles,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Chapter 1 - Drug Discovery and Development: An Overview of Modern Methods and Principles,

Reference 6

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This paper cites Proof of concept: Drug selecƟon? Or dose selecƟon? Thoughts on mulƟplicity issues,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Proof of concept: Drug selecƟon? Or dose selecƟon? Thoughts on mulƟplicity issues,

Reference 7

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This paper cites In vitro and in vivo methods to assess pharmacokineƟc drug–drug interacƟons in drug discovery and development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners In vitro and in vivo methods to assess pharmacokineƟc drug–drug interacƟons in drug discovery and development,

Reference 8

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Unresolved cited work

Reference 9

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This paper cites PublicaƟon of clinical trials supporƟng successful new drug applicaƟons: a literature analysis,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners PublicaƟon of clinical trials supporƟng successful new drug applicaƟons: a literature analysis,

Reference 10

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Observation 9fba6888-47b3-41eb-8c70-012122b55045 · outbound

This paper cites DigitalizaƟon in pharmaceuƟcal industry: What to focus on under the digital implementaƟon process?,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners DigitalizaƟon in pharmaceuƟcal industry: What to focus on under the digital implementaƟon process?,

Reference 11

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Observation 8471c991-2c84-4447-a5e7-dac54575f7f0 · outbound

This paper cites Model-based machine learning,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Model-based machine learning,

Reference 12

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This paper cites Structure-based funcƟonal design of drugs: from target to lead compound,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Structure-based funcƟonal design of drugs: from target to lead compound,

Reference 13

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Deep learning in medical imaging: general overview,

Reference 14

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This paper cites The potenƟal applicaƟon of arƟficial intelligence in transport,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The potenƟal applicaƟon of arƟficial intelligence in transport,

Reference 15

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Observation 31176af3-a029-4ff0-9d5b-7c0022ea5a19 · outbound

This paper cites A qualitaƟve research on markeƟng and sales in the arƟficial intelligence age,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners A qualitaƟve research on markeƟng and sales in the arƟficial intelligence age,

Reference 16

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This paper cites ArƟficial intelligence and the public sector—applicaƟons and challenges,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence and the public sector—applicaƟons and challenges,

Reference 17

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Observation 6a1b4b5a-8bb6-4306-84aa-b5599485599c · outbound

This paper cites ArƟficial intelligence in drug discovery and development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence in drug discovery and development,

Reference 18

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners An applicaƟon of machine learning to haematological diagnosis,

Reference 19

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Observation 490e2653-a755-4d8c-b910-c9b524432413 · outbound

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The rise and fall of machine learning methods in biomedical research,

Reference 20

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This paper cites Unsupervised deep learning reveals prognosƟcally relevant subtypes of glioblastoma,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Unsupervised deep learning reveals prognosƟcally relevant subtypes of glioblastoma,

Reference 21

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Observation 640454d8-6dc5-4c77-95e1-dd43e02208d2 · outbound

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The rise of deep learning in drug discovery,

Reference 22

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Observation cd3e1ab1-71f4-4d46-bf37-bd0d8117f422 · outbound

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Machine learning and computer vision approaches for phenotypic profiling,

Reference 23

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This paper cites ArƟficial intelligence in drug development: present status and future prospects,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence in drug development: present status and future prospects,

Reference 24

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This paper cites ArƟficial intelligence: the beginning of a new era in pharmacy profession,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence: the beginning of a new era in pharmacy profession,

Reference 25

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Observation 33a290fd-285c-47b1-b5d5-e2986266ee0f · outbound

This paper cites ArƟficial intelligence in drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence in drug discovery,

Reference 26

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Observation faf3c9db-5d8b-4856-9c5d-b5c98d11adfb · outbound

This paper cites ApplicaƟons of machine learning in drug discovery and development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ApplicaƟons of machine learning in drug discovery and development,

Reference 27

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners PrioriƟzaƟon of molecular targets for anƟmalarial drug discovery,

Reference 28

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Observation 6497fd36-c544-4b20-b498-99dd6a171e56 · outbound

This paper cites Principles of early drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Principles of early drug discovery,

Reference 29

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Observation da46baa1-3788-4567-8275-5710b9505cb2 · outbound

This paper cites Target discovery from data mining approaches,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Target discovery from data mining approaches,

Reference 30

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners PaƩern analysis of geneƟcs and genomics: a survey of the state-of-art,

Reference 31

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Observation df8fd2f2-97cd-45a5-a087-8e370505c3db · outbound

This paper cites The use of single-nucleoƟde polymorphism maps in pharmacogenomics,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The use of single-nucleoƟde polymorphism maps in pharmacogenomics,

Reference 32

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Observation 13b9ad13-9f8e-4474-a3c3-d9291c57045a · outbound

This paper cites Novel copy-number variaƟons in pharmacogenes contribute to interindividual differences in drug pharmacokineƟcs,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Novel copy-number variaƟons in pharmacogenes contribute to interindividual differences in drug pharmacokineƟcs,

Reference 33

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This paper cites Benefits and limitaƟons of genome-wide associaƟon studies,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Benefits and limitaƟons of genome-wide associaƟon studies,

Reference 34

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This paper cites 10 years of GWAS discovery: biology, funcƟon, and translaƟon,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners 10 years of GWAS discovery: biology, funcƟon, and translaƟon,

Reference 35

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Observation d54cc7ac-4153-42a0-a189-4d692e80a0d0 · outbound

This paper cites Coming of age: ten years of next-generaƟon sequencing technologies,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Coming of age: ten years of next-generaƟon sequencing technologies,

Reference 36

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Observation 60ccddda-ec1b-40da-a7c8-696922a27fd6 · outbound

This paper cites Genome-scale CRISPR-Cas9 knockout screening in human cells,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Genome-scale CRISPR-Cas9 knockout screening in human cells,

Reference 37

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source=pdf_text observed=2026-08-11T15:19:36.863314Z digest=sha256:fc06423b48f4ae253c65a9f98083108805910978310ded789f86cab7b7eab7ea

Observation fd4190e3-5ff2-4498-9cf3-c1ffae672ade · outbound

This paper cites Improved vectors and genome-wide libraries for CRISPR screening,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Improved vectors and genome-wide libraries for CRISPR screening,

Reference 38

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no resolver link, observed 2026-08-11T15:19:36.867646Z

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source=pdf_text observed=2026-08-11T15:19:36.867646Z digest=sha256:0084491f0cf4c0e8d07dbcf4ede1ad8189747d988d5de3ab48a785b83dbdac80

Observation b872cf4e-2703-4c71-ad28-fdeeb63f4c97 · outbound

This paper cites Delivering CRISPR: a review of the challenges and approaches,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Delivering CRISPR: a review of the challenges and approaches,

Reference 39

Resolution
verified exact
raw_fallback, observed 2026-08-11T15:19:38.728480Z

Source-reported events for the cited work

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source=pdf_text observed=2026-08-11T15:19:36.871315Z digest=sha256:c790bbf6b031c1133fe7fba9330887404f4bec378ba8b6cc38aafabd927011f1

Observation 904c0e47-9a31-4e09-85a2-71bc30d667df · outbound

This paper cites Next-generaƟon proteomics: towards an integraƟve view of proteome dynamics,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Next-generaƟon proteomics: towards an integraƟve view of proteome dynamics,

Reference 40

Resolution
verified exact
doi, observed 2026-08-11T15:19:38.280480Z

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source=pdf_text observed=2026-08-11T15:19:36.875040Z digest=sha256:d44bb559cc036f5dae74947d77a0376b191146690fad03b821bffe3960e1a703

Observation 6b5c54a8-e38a-4e6c-bbb8-9ad63a5cd533 · outbound

This paper cites The emerging role of mass spectrometry-based proteomics in drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The emerging role of mass spectrometry-based proteomics in drug discovery,

Reference 41

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no resolver link, observed 2026-08-11T15:19:36.879364Z

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source=pdf_text observed=2026-08-11T15:19:36.879364Z digest=sha256:fc9266af612fa596dd35de09579983ab0d0168878829eb26c939262f8d1afcf3

Observation ff73f641-8e55-4cb8-a6a1-ebadc712cedd · outbound

This paper cites Protein-protein interacƟon networks (PPI) and complex diseases,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Protein-protein interacƟon networks (PPI) and complex diseases,

Reference 42

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source=pdf_text observed=2026-08-11T15:19:36.883784Z digest=sha256:4109f3516fe9161573b6763c96816c01dded9bb500a5313fd08e46740e97a333

Observation 0dad075c-9321-4899-a45c-d20b43cd6059 · outbound

This paper cites Mass-spectrometric exploraƟon of proteome structure and funcƟon,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Mass-spectrometric exploraƟon of proteome structure and funcƟon,

Reference 43

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no resolver link, observed 2026-08-11T15:19:36.887680Z

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source=pdf_text observed=2026-08-11T15:19:36.887680Z digest=sha256:dd1321645373b58a30c5ed2f8b5f26de2241f4d139bcab86405e8501917458f7

Observation ec7c16de-082c-4aea-b56d-bae4113dfb34 · outbound

This paper cites Protein-protein interacƟon (PPI) network: recent advances in drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Protein-protein interacƟon (PPI) network: recent advances in drug discovery,

Reference 44

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unresolved
no resolver link, observed 2026-08-11T15:19:36.891222Z

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source=pdf_text observed=2026-08-11T15:19:36.891222Z digest=sha256:9559f41f1b0ff38394e83e8df97a8163065b5d178949b02ccc4bd27b49f7bb6a

Observation 5890326b-3d1a-4449-afc7-7601646284b3 · outbound

This paper cites RNA sequencing: advances, challenges and opportuniƟes,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners RNA sequencing: advances, challenges and opportuniƟes,

Reference 45

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no resolver link, observed 2026-08-11T15:19:36.895505Z

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source=pdf_text observed=2026-08-11T15:19:36.895505Z digest=sha256:db028ecedfefddf6d8f54a42b4582a0fee2de519d93bf354c2d2253009a7f1df

Observation 54333f8a-f6a2-4990-819e-8d91edab2e15 · outbound

This paper cites RNA-Seq: a revoluƟonary tool for transcriptomics,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners RNA-Seq: a revoluƟonary tool for transcriptomics,

Reference 46

Resolution
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no resolver link, observed 2026-08-11T15:19:36.899327Z

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source=pdf_text observed=2026-08-11T15:19:36.899327Z digest=sha256:a9ad1359710c109ac5a55bd791897284e890d0e200af8d98f7e6f0a87288274d

Observation 743b6f6a-93b2-4773-9db6-f033c0b6f275 · outbound

This paper cites NMR screening techniques in drug discovery and drug design,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners NMR screening techniques in drug discovery and drug design,

Reference 47

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no resolver link, observed 2026-08-11T15:19:36.902953Z

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source=pdf_text observed=2026-08-11T15:19:36.902953Z digest=sha256:70b8030889b603b2e28c2221e554dc409a24ebe708fc517da8f469df27a28cb5

Observation 0def732e-8467-4ac3-a329-e513c6781cd7 · outbound

This paper cites A review of applicaƟons of metabolomics in cancer,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners A review of applicaƟons of metabolomics in cancer,

Reference 48

Resolution
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no resolver link, observed 2026-08-11T15:19:36.906233Z

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source=pdf_text observed=2026-08-11T15:19:36.906233Z digest=sha256:7ffb61a3dc8d925002541df1971f88ce69051de2661c25ee52e1f9bf4969a36b

Observation 8f32f4dc-b184-460e-ab1e-bcca37c5c988 · outbound

This paper cites Recent advances in metabolomics analysis for early drug development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Recent advances in metabolomics analysis for early drug development,

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-11T15:19:36.910816Z

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source=pdf_text observed=2026-08-11T15:19:36.910816Z digest=sha256:28d2fdaa6e1100bcd42c213521ffaa18ea3bb63319817f3ec39bdc32891f5d21

Observation 2397b520-93b1-43c0-b54e-d22aec7d908c · outbound

This paper cites Metabolomics in pharmaceuƟcal research and development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Metabolomics in pharmaceuƟcal research and development,

Reference 50

Resolution
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no resolver link, observed 2026-08-11T15:19:36.915769Z

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source=pdf_text observed=2026-08-11T15:19:36.915769Z digest=sha256:902f03bd75ed6ee1ebd96654a818de6612ac6bf71fe59481221e0ca4c1144ed2

Observation b3e55785-0a8b-4110-a6fe-1685bb2ba0cc · outbound

This paper cites MulƟ-omics integraƟon for the design of novel therapies and the idenƟficaƟon of novel biomarkers,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners MulƟ-omics integraƟon for the design of novel therapies and the idenƟficaƟon of novel biomarkers,

Reference 51

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no resolver link, observed 2026-08-11T15:19:36.919578Z

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source=pdf_text observed=2026-08-11T15:19:36.919578Z digest=sha256:f9d4374ced3974f6a18617be6aa76bb08f5c82b608ae0429c81ec0f27016c82d

Observation 01dc0741-f448-46e2-8a6d-06fd0afe0f01 · outbound

This paper cites From ‘Omics to MulƟ-omics Technologies: the Discovery of Novel Causal Mediators,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners From ‘Omics to MulƟ-omics Technologies: the Discovery of Novel Causal Mediators,

Reference 52

Resolution
verified exact
doi, observed 2026-08-11T15:19:38.267006Z

Source-reported events for the cited work

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source=pdf_text observed=2026-08-11T15:19:36.924123Z digest=sha256:ce601451cc798a8d1a3580b9d93765988b81d40620f5468d27648fc7556bae6b

Observation d2b30379-61ff-4c74-b43a-c912f99b8999 · outbound

This paper cites STRING v11: protein–protein associaƟon networks with increased coverage, supporƟng funcƟonal discovery in genome-wide experimental datasets,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners STRING v11: protein–protein associaƟon networks with increased coverage, supporƟng funcƟonal discovery in genome-wide experimental datasets,

Reference 53

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unresolved
no resolver link, observed 2026-08-11T15:19:36.927926Z

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source=pdf_text observed=2026-08-11T15:19:36.927926Z digest=sha256:43f6a809d13118aa95544d7683c6cf6eec5e88759dc6749aa3514013fb0be0fa

Observation 06117f81-3f62-4f78-8419-be0c8d1bf4a0 · outbound

This paper cites Cytoscape: a soŌware environment for integrated models of biomolecular interacƟon networks,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Cytoscape: a soŌware environment for integrated models of biomolecular interacƟon networks,

Reference 54

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source=pdf_text observed=2026-08-11T15:19:36.931288Z digest=sha256:b8f4dbe5ed3b95552ec7d7b338d8cfd7faadb2f95a0c46c51136e3572a35e978

Observation 625d86db-d90a-4d04-8fc7-830b73191c26 · outbound

This paper cites Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis,

Reference 55

Resolution
unresolved
no resolver link, observed 2026-08-11T15:19:36.935871Z

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source=pdf_text observed=2026-08-11T15:19:36.935871Z digest=sha256:281a4c273d6cd86339ebc4388ceef1e41469cb9bc363ce70624bfa452c406aaa

Observation 2872169a-8196-450c-9afd-ad6f9f52f500 · outbound

This paper cites Network-Based Approaches for MulƟ-omics IntegraƟon,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Network-Based Approaches for MulƟ-omics IntegraƟon,

Reference 56

Resolution
verified exact
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source=pdf_text observed=2026-08-11T15:19:36.940525Z digest=sha256:ed0b7cdaa780733635b049f524085796b28cc59a803c4401ac779edec61efc4a

Observation 6ece92cf-f63b-4634-a8d6-832c354463dc · outbound

This paper cites The protein data bank,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The protein data bank,

Reference 57

Resolution
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no resolver link, observed 2026-08-11T15:19:36.944459Z

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source=pdf_text observed=2026-08-11T15:19:36.944459Z digest=sha256:85081e4ac608c01f104d2148cef92b0a2ee51dc1b7a581e51df790de5081ff89

Observation 25f76fa4-a033-4972-bb5b-303b501a625a · outbound

This paper cites New soŌware tools in EMAN2 inspired by EMDatabank map challenge,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners New soŌware tools in EMAN2 inspired by EMDatabank map challenge,

Reference 58

Resolution
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no resolver link, observed 2026-08-11T15:19:36.948249Z

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source=pdf_text observed=2026-08-11T15:19:36.948249Z digest=sha256:7c665a0a21b69beca61164bf451ac5847c78e698e1ecff648ddaab3c3ad25def

Observation d15b079a-35b2-43c9-8e2c-82f71188f567 · outbound

This paper cites Protein structure predicƟon: challenges, advances, and the shiŌ of research paradigms,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Protein structure predicƟon: challenges, advances, and the shiŌ of research paradigms,

Reference 59

Resolution
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source=pdf_text observed=2026-08-11T15:19:36.951567Z digest=sha256:dde8517365250199829a827a8a01f3ae0aea648c03cb7187536566ac683bb263

Observation 0e8bbe6a-6e88-408a-8abc-22140acd9618 · outbound

This paper cites The current role and evoluƟon of X-ray crystallography in drug discovery and development,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The current role and evoluƟon of X-ray crystallography in drug discovery and development,

Reference 60

Resolution
verified exact
raw_fallback, observed 2026-08-11T15:19:38.655724Z

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source=pdf_text observed=2026-08-11T15:19:36.954790Z digest=sha256:f3cac1dea14a758d54eccb045cb47e003b05ac96668678f286e8260e7cb1d6c3

Observation 82c3b7dd-d1dd-4125-8347-cb22b35e972e · outbound

This paper cites Current NMR techniques for structure-based drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Current NMR techniques for structure-based drug discovery,

Reference 61

Resolution
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source=pdf_text observed=2026-08-11T15:19:36.958507Z digest=sha256:e93aef79d1515e0c09df18456efe1cd42bcf52fd3e690bfb5e23f64bea277ec4

Observation ee6f8618-91a8-4f55-ba2c-4784c05bb1d0 · outbound

This paper cites Designing small molecules for therapeuƟc success: a contemporary perspecƟve,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Designing small molecules for therapeuƟc success: a contemporary perspecƟve,

Reference 62

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source=pdf_text observed=2026-08-11T15:19:36.962266Z digest=sha256:fcbc8a9c104cf09750cd0dd56c97fadbb45496e5332a1b70874fb1d51f62d92c

Observation 0560525f-6afa-4c9f-80b8-492f0c81ba65 · outbound

This paper cites Homology modeling in the Ɵme of collecƟve and arƟficial intelligence,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Homology modeling in the Ɵme of collecƟve and arƟficial intelligence,

Reference 63

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source=pdf_text observed=2026-08-11T15:19:36.966446Z digest=sha256:d9889a1cc48c5cb6f1c75fe8e965a74f3a34209f512e62faac5544c70283c609

Observation 97ea09f0-57a9-46e3-b798-f77e3ffef54c · outbound

This paper cites Homology modeling in drug discovery: Overview, current applicaƟons, and future perspecƟves,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Homology modeling in drug discovery: Overview, current applicaƟons, and future perspecƟves,

Reference 64

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source=pdf_text observed=2026-08-11T15:19:36.970315Z digest=sha256:1d154ed127f19aee2f010121ab52d2918e04c20908d40a44622ece7c05adf8ea

Observation 08594411-7251-4c71-a1ab-219d39496492 · outbound

This paper cites The SWISS-MODEL Repository and associated resources,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The SWISS-MODEL Repository and associated resources,

Reference 65

Resolution
unresolved
no resolver link, observed 2026-08-11T15:19:36.974491Z

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source=pdf_text observed=2026-08-11T15:19:36.974491Z digest=sha256:27b4f62c26dcf7f8a31b8ed20def2419cef1e24e49061fb2f203de2841d31d65

Observation 2e46033c-0ccd-4b36-b96c-23694f3e98d4 · outbound

This paper cites ComparaƟve protein structure modeling using MODELLER,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ComparaƟve protein structure modeling using MODELLER,

Reference 66

Resolution
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no resolver link, observed 2026-08-11T15:19:36.978660Z

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source=pdf_text observed=2026-08-11T15:19:36.978660Z digest=sha256:afee0e9c7c32b7f04c398f44e21bae32d7e8b5e056ac42f540710a4c26785c71

Observation 76d5d034-29ca-46e1-92f8-ea53954cb9a7 · outbound

This paper cites Fold recogniƟon methods,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Fold recogniƟon methods,

Reference 67

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source=pdf_text observed=2026-08-11T15:19:36.982559Z digest=sha256:ad15f8c2d3eddd17ef4c66787dc177d99a0e4e31b07c1aaf9cb7032f984ca877

Observation 12220aa4-42b8-4f9f-8b5d-41138e701c61 · outbound

This paper cites The Phyre2 web portal for protein modeling, predicƟon and analysis,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The Phyre2 web portal for protein modeling, predicƟon and analysis,

Reference 68

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source=pdf_text observed=2026-08-11T15:19:36.986432Z digest=sha256:255df72f42bcdcca26bfe616818cc9b65db238099b304c4df8de5b7b603fbd53

Observation 00aa61bf-1e75-4377-89e1-8be8567a7f4f · outbound

This paper cites The I-TASSER Suite: protein structure and funcƟon predicƟon,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The I-TASSER Suite: protein structure and funcƟon predicƟon,

Reference 69

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source=pdf_text observed=2026-08-11T15:19:36.989972Z digest=sha256:bb1cf6b04b5eca155310a07ca93adf68cc66ca904b4adf73ffff814f9f89d8eb

Observation 218dafb8-d8ba-4072-b111-cfae8735ad07 · outbound

This paper cites Highly accurate protein structure predicƟon with AlphaFold,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Highly accurate protein structure predicƟon with AlphaFold,

Reference 70

Resolution
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no resolver link, observed 2026-08-11T15:19:36.993669Z

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source=pdf_text observed=2026-08-11T15:19:36.993669Z digest=sha256:f735dce5ab44accde5841fc49ea6eb1d87d2f4bc08f67daa55c73b0fb7141170

Observation 72d6ebbd-705b-4ca4-bc29-84a2d40b2ed0 · outbound

This paper cites AI revoluƟons in biology: The joys and perils of AlphaFold,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners AI revoluƟons in biology: The joys and perils of AlphaFold,

Reference 71

Resolution
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no resolver link, observed 2026-08-11T15:19:36.997298Z

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source=pdf_text observed=2026-08-11T15:19:36.997298Z digest=sha256:8067f23789f2fe4bdb115701b9998939227355d52c851408b55bdeed461599d3

Observation 1f914d04-d526-4352-9358-56a1b885ce6c · outbound

This paper cites Machine learning in drug discovery: a review,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Machine learning in drug discovery: a review,

Reference 72

Resolution
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no resolver link, observed 2026-08-11T15:19:37.001810Z

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source=pdf_text observed=2026-08-11T15:19:37.001810Z digest=sha256:2f875e459fd2241dcfe303501cf29c7fa90ad48e8f6e32fd59596e378e5bc37f

Observation 6cb4d0ec-f4ef-49cd-b697-9acd189f0345 · outbound

This paper cites PredicƟng new molecular targets for known drugs,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners PredicƟng new molecular targets for known drugs,

Reference 73

Resolution
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no resolver link, observed 2026-08-11T15:19:37.005619Z

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Observation 31b3e14a-b2ca-40f3-9683-55cb91420521 · outbound

This paper cites Chemical space as a source for new drugs,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Chemical space as a source for new drugs,

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Observation 789e476d-6c90-4c38-af51-805e7c52ea61 · outbound

This paper cites ArƟficial intelligence in drug discovery: a comprehensive review of data-driven and machine learning approaches,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ArƟficial intelligence in drug discovery: a comprehensive review of data-driven and machine learning approaches,

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Observation 58287789-634d-4dc0-9168-080922356905 · outbound

This paper cites AdapƟng drug discovery to arƟficial intelligence,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners AdapƟng drug discovery to arƟficial intelligence,

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Observation 85eabec6-930f-47b3-8da3-cb743abb5acb · outbound

This paper cites Planning chemical syntheses with deep neural networks and symbolic AI,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Planning chemical syntheses with deep neural networks and symbolic AI,

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source=pdf_text observed=2026-08-11T15:19:37.021110Z digest=sha256:e280825f58d574c8c773a4d1e2f99b664cff3f73b434ceea058c95ed1c763b06

Observation 7ec842ac-2156-4332-aa55-1349efb8dbbe · outbound

This paper cites Drug reposiƟoning and repurposing: terminology and definiƟons in literature,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Drug reposiƟoning and repurposing: terminology and definiƟons in literature,

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source=pdf_text observed=2026-08-11T15:19:37.025567Z digest=sha256:e01775efb37d1b6d9426ac36b09cffa93f05cd39ebf9ec8623123663b8af505b

Observation 3730f90c-3bc9-4cb2-bc7b-9f0c7003dee1 · outbound

This paper cites Drug reposiƟoning: idenƟfying and developing new uses for exisƟng drugs,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Drug reposiƟoning: idenƟfying and developing new uses for exisƟng drugs,

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source=pdf_text observed=2026-08-11T15:19:37.029696Z digest=sha256:545238a9d4746f0b3e2ba25cd291ba7309f0eef3b4a3856b63115190281714b1

Observation 255eb983-da63-4043-82c3-6c897980e208 · outbound

This paper cites The prescribable drugs with efficacy in experimental epilepsies (PDE 3) database for drug repurposing research in epilepsy,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The prescribable drugs with efficacy in experimental epilepsies (PDE 3) database for drug repurposing research in epilepsy,

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source=pdf_text observed=2026-08-11T15:19:37.034323Z digest=sha256:c523014369406ebaf1d4bb041e0cce1dbc668be608c1117d5091ef6584f4c1b6

Observation 28708fee-834f-442c-97c1-7a3d0ba4ae6f · outbound

This paper cites Drug repurposing for viral infecƟous diseases: how far are we?,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Drug repurposing for viral infecƟous diseases: how far are we?,

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Observation 777a0151-fa21-4e91-a405-3d60356d7f90 · outbound

This paper cites Old wines in new boƩles: Repurposing opportuniƟes for Parkinson’s disease,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Old wines in new boƩles: Repurposing opportuniƟes for Parkinson’s disease,

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Observation b783b5b8-2480-4008-92ae-18195ed9d6ac · outbound

This paper cites Discovery of drug mode of acƟon and drug reposiƟoning from transcripƟonal responses,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Discovery of drug mode of acƟon and drug reposiƟoning from transcripƟonal responses,

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Observation 09ad562e-5ffe-469c-aeb8-2d71e3abd280 · outbound

This paper cites ExploiƟng drug–disease relaƟonships for computaƟonal drug reposiƟoning,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ExploiƟng drug–disease relaƟonships for computaƟonal drug reposiƟoning,

Reference 84

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source=pdf_text observed=2026-08-11T15:19:37.051061Z digest=sha256:c6b24f65f8f4547407174d28118e8f7b3b63beeaa4089988084a8a331c9217f5

Observation fab8cf29-0222-4366-9256-96437e935ab0 · outbound

This paper cites ReposiƟoning of an exisƟng drug for the neglected tropical disease Onchocerciasis,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ReposiƟoning of an exisƟng drug for the neglected tropical disease Onchocerciasis,

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source=pdf_text observed=2026-08-11T15:19:37.054966Z digest=sha256:e463575e9a5661d75abd328b5bdac6b9a30c5bbd3743440397c9a7fd00deb480

Observation 2c58753a-3ca5-44ee-b087-128e1f27c0f6 · outbound

This paper cites The Drug Repurposing Hub: a next-generaƟon drug library and informaƟon resource,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The Drug Repurposing Hub: a next-generaƟon drug library and informaƟon resource,

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source=pdf_text observed=2026-08-11T15:19:37.058745Z digest=sha256:e2cd7e2c5216980910b81d1f235e3df2665004ba2ec89ba9fd6e718058e2f8d1

Observation 2a439401-ca9f-4f92-915f-10a12662987e · outbound

This paper cites Giving drugs a second chance: overcoming regulatory and financial hurdles in repurposing approved drugs as cancer therapeuƟcs,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Giving drugs a second chance: overcoming regulatory and financial hurdles in repurposing approved drugs as cancer therapeuƟcs,

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Observation e3141e85-2fa5-490e-a15c-11a16c2e02b2 · outbound

This paper cites The impact of thalidomide use in birth defects in Brazil,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The impact of thalidomide use in birth defects in Brazil,

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Observation 37c738fc-7578-4e56-9f8a-c4c1975e6cd5 · outbound

This paper cites The mortality associated with erythema nodosum leprosum in Ethiopia: a retrospecƟve hospital-based study,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners The mortality associated with erythema nodosum leprosum in Ethiopia: a retrospecƟve hospital-based study,

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Observation e8263318-c290-444c-aaf0-3a86d65c4b12 · outbound

This paper cites AnƟtumor acƟvity of thalidomide in refractory mulƟple myeloma,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners AnƟtumor acƟvity of thalidomide in refractory mulƟple myeloma,

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Observation 7afa47ae-fdd8-41ea-82dd-f3ed78e97fa9 · outbound

This paper cites Drug reposiƟoning: Progress and challenges in drug discovery for various diseases,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Drug reposiƟoning: Progress and challenges in drug discovery for various diseases,

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source=pdf_text observed=2026-08-11T15:19:37.079989Z digest=sha256:ab69aa742f6e0237c0aef3fd740211946e1a8f79198f160cec1d6d06dc9f3599

Observation 52bafd0d-54cd-40ab-9615-4b78a75c9a6f · outbound

This paper cites High-throughput screening plaƞorms in the discovery of novel drugs for neurodegeneraƟve diseases,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners High-throughput screening plaƞorms in the discovery of novel drugs for neurodegeneraƟve diseases,

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This paper cites High-throughput screening: update on pracƟces and success,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners High-throughput screening: update on pracƟces and success,

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Observation 9c60aca4-cd74-4599-9f18-5f6fe566f6b8 · outbound

This paper cites Combinatorial chemistry in drug discovery,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Combinatorial chemistry in drug discovery,

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source=pdf_text observed=2026-08-11T15:19:37.093918Z digest=sha256:764e4e7e4e338e98c428f7fb7e121351f51b3f828f40f8257ae9d3af761c0066

Observation 741dd62c-2704-4ffa-bb2e-9c66e494e5e2 · outbound

This paper cites Comprehensive survey of consensus docking for high-throughput virtual screening,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Comprehensive survey of consensus docking for high-throughput virtual screening,

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ChemoinformaƟcs and drug discovery,

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Observation 7a82042a-3be5-477a-83cd-f4ba82c9bc27 · outbound

This paper cites Status of HTS data mining approaches,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners Status of HTS data mining approaches,

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Observation bdbcca69-6240-4586-a049-60aa1212770e · outbound

This paper cites ComputaƟonal Filters in Lead GeneraƟon: TargeƟng Drug-Like Chemotypes,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners ComputaƟonal Filters in Lead GeneraƟon: TargeƟng Drug-Like Chemotypes,

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source=pdf_text observed=2026-08-11T15:19:37.109608Z digest=sha256:200b5f7cec1cb71680f1060903e9e0202c8e32f5febf9f89a012935903716e72

Observation d2dadda7-458d-4a3c-8a36-e867d4fa38b7 · outbound

This paper cites High-throughput drug screening and mulƟ-omic analysis to guide individualized treatment for mulƟple myeloma,.

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners High-throughput drug screening and mulƟ-omic analysis to guide individualized treatment for mulƟple myeloma,

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Observation a535d9aa-111e-40b7-b284-c0e8ccee3fb3 · outbound

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Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners High-throughput screening of paƟent-derived cultures reveals potenƟal for precision medicine in glioblastoma,

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