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Paper Citation Record · LEDGER

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics

As of 10 August 2026, this Paper Citation Record lists 63 of 63 outbound references and 0 inbound Pith citation observations for arXiv:2508.01490.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.01490 v2

Coverage vector

measured 63 of 63 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T05:36:44.790811Z

measured 63 of 63 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

63 of 63 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8883c63d-1436-4d51-9777-bb4bb21f1e04 · outbound

This paper cites write newline.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics write newline

Reference 1

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.268902Z digest=sha256:cea2364145e3ff1e8451070e39fe202dd9f22ae69637affef16c60be476d1593

Observation c86df5f1-d321-407a-9289-99bc26212aaf · outbound

This paper cites Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Atlas: A novel pathology foundation model by mayo clinic, charit\'e, and aignostics, 2025

Reference 2

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Observation f08e93f5-00cd-4a3c-adee-1f5fe71454a9 · outbound

This paper cites Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F

Reference 3

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Source-reported events for the cited work

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Observation 835cadb6-501c-44ed-95b4-6ef2dc510b89 · outbound

This paper cites Super-resolved spatial transcriptomics by deep data fusion.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Super-resolved spatial transcriptomics by deep data fusion

Reference 4

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.293924Z digest=sha256:9ac016532f2a3793e024e89ecc5a56b4276708b7bb492052fab94407f66d235c

Observation 373eb5d3-e885-4b0d-8063-02e80f9fecc1 · outbound

This paper cites Schoenfeld, and Chad Vanderbilt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Schoenfeld, and Chad Vanderbilt

Reference 5

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Source-reported events for the cited work

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Observation 98361def-b61c-4c8a-aa5f-ebba7d774d03 · outbound

This paper cites Emerging properties in self-supervised vision transformers.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Emerging properties in self-supervised vision transformers

Reference 6

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Source-reported events for the cited work

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Observation ade58408-0ca1-4569-9099-863d70eecb08 · outbound

This paper cites Towards a general-purpose foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Towards a general-purpose foundation model for computational pathology

Reference 7

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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.316146Z digest=sha256:c8fcc6a7df893be90f38042f9b02de6b64b5bcbd2e4b4447b5ecbd7b4bf0ab0d

Observation c6118fe4-b249-41f6-8859-89ca07ba3782 · outbound

This paper cites Tran, Yiwei Xiao, Shengyu Li, Vrutant V.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Tran, Yiwei Xiao, Shengyu Li, Vrutant V

Reference 8

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.325786Z digest=sha256:44dbf71da59d9985482e986c0e88f1b6853a7f6f95e7eb902c1820ce745d3601

Observation dab9ed30-2d17-4ba1-970b-171eaa559d2d · outbound

This paper cites scgpt: toward building a foundation model for single-cell multi-omics using generative ai.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt: toward building a foundation model for single-cell multi-omics using generative ai

Reference 9

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.335024Z digest=sha256:85c2e22a1975bc56c187935fe7183ce49a1bd7beb696a949647225611a068fb8

Observation 355e35e8-06de-4abf-b8ff-9ad2993ac5fe · outbound

This paper cites Contrastive vision-language pre-training with limited resources.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Contrastive vision-language pre-training with limited resources

Reference 10

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.341185Z digest=sha256:d3a8f4ba2b8f88260bfa2881dae7865f767bf6e6a02251360c79a783fa3f1ae3

Observation c1c06886-3e69-4fd1-b56a-1017a27e0519 · outbound

This paper cites Geneformer: Learned gene compression using transformer-based context modeling.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Geneformer: Learned gene compression using transformer-based context modeling

Reference 11

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.349639Z digest=sha256:ad5406238ff72c38e97a3440c77556c223cdb5aa42107e4d10f79787fb5433e2

Observation 79fcc4d1-e299-4878-90e4-c7aff154a3b4 · outbound

This paper cites Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Navia, Nicolo Fusi, Srivatsan Raghavan, Peter S

Reference 12

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.355720Z digest=sha256:bea06ae49d05a1e67d2726e7d469aa7a2fa672a3d85a30f172146a3a5dddba3d

Observation 76b49cbd-f726-4b1e-8943-dd22083913f5 · outbound

This paper cites Multimodal Whole Slide Foundation Model for Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Multimodal Whole Slide Foundation Model for Pathology

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.362947Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.362947Z digest=sha256:45447a82a7a07b2b37a97749b3a1136435ca43381ba0be78885674bd3e6c935f

Observation 4f86d1e8-aeb3-4353-bdb5-44934f51eb84 · outbound

This paper cites Distilling foundation models for robust and efficient models in digital pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Distilling foundation models for robust and efficient models in digital pathology, 2025

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.334732Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.376424Z digest=sha256:915f34a8c72f04474443a64efd12eb49d78df17bcf51305f32526ec52b212dcf

Observation 1d49d71f-d141-4545-a122-8807f4373c8e · outbound

This paper cites Large-scale foundation model on single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Large-scale foundation model on single-cell transcriptomics

Reference 15

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.383956Z digest=sha256:0a8e1fe06004034a3b189403e9fcede638aed7038e249800ee14e4c3a589b522

Observation 82e52781-712a-42d7-a6e9-ed53ec66861d · outbound

This paper cites Integrating spatial gene expression and breast tumour morphology via deep learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Integrating spatial gene expression and breast tumour morphology via deep learning

Reference 16

Resolution
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.392080Z digest=sha256:9daf45f3dc550e46ba9916f88b9e94e31a8e3b25cf8135958632ba6acd5ff8ac

Observation e1832eda-3308-4c7e-b08f-d624b393638a · outbound

This paper cites Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen

Reference 17

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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.406115Z digest=sha256:59d4c98a68880fd7b6affc6ba41aeab4281257062b31ae3b3c78357cad64c8ba

Observation 35ca6e0e-d330-4046-9ec5-4e4fb5ad11e0 · outbound

This paper cites Montine, and James Zou.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Montine, and James Zou

Reference 18

Resolution
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Source-reported events for the cited work

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Observation 6bc787c9-8d10-48b0-9d38-2f843c64a592 · outbound

This paper cites Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C

Reference 19

Resolution
verified fuzzy
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Source-reported events for the cited work

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Observation b0494301-10c0-4e8b-b18f-b8d90c3f6430 · outbound

This paper cites Quilt-1M: One Million Image-Text Pairs for Histopathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Quilt-1M: One Million Image-Text Pairs for Histopathology

Reference 20

Resolution
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation e448e946-6b4b-4716-9adf-7958c6ff9052 · outbound

This paper cites Openclip, 2021.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Openclip, 2021

Reference 21

Resolution
unresolved
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Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.444965Z digest=sha256:0e9aebb03cf4551d1285835c790067e18ae37bcd25b2c159a1761d1e14a5aef4

Observation decec8b0-703c-4032-a157-fc491129b4cf · outbound

This paper cites Hest-1k: A dataset for spatial transcriptomics and histology image analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Hest-1k: A dataset for spatial transcriptomics and histology image analysis

Reference 22

Resolution
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Source-reported events for the cited work

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Observation 948bd05c-89bc-4fe2-8146-dd5185a0e5da · outbound

This paper cites Chen, Drew F.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Chen, Drew F

Reference 23

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.459344Z digest=sha256:156c3aecf3914b2ac8a16a1043f5a2d75b9246db32e0db798b1d5dfedad64a31

Observation 5bf60a15-eeb7-4fda-b5e9-3a9c67bde109 · outbound

This paper cites Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Modeling dense multimodal interactions between biological pathways and histology for survival prediction, 2024 c

Reference 24

Resolution
verified fuzzy
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Source-reported events for the cited work

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source=arxiv_source observed=2026-08-06T05:36:44.464088Z digest=sha256:053bfcdcfd7db292269693bf11dab74727f35d78243bbbe09ae96a90dcde32e5

Observation fca72e1c-8069-4fcd-a1bb-57dec35e16e8 · outbound

This paper cites Song, Richard J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Song, Richard J

Reference 25

Resolution
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

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Observation 27d52d13-3c00-403a-8236-263b3f30f025 · outbound

This paper cites o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics o lscher, Tri Q. Nguyen, Jesper Kers, Roman D. B \

Reference 26

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.478074Z digest=sha256:8aa2b728e509fecdef0a60a10495ca059a26361e7e595e05f1b3ce45945f2b8b

Observation ed64d291-8637-4f6a-afc9-1bda7d485580 · outbound

This paper cites Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathomclip: Connecting tumor histology with spatial gene expression via locally enhanced contrastive learning of pathology and single-cell foundation model

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.038419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.482918Z digest=sha256:8c29476e99015ab50457d40efaefa35e7544b25e02b4c08039962aacf5129691

Observation a9b4dc2a-7b53-4e62-ac84-8ea830d3c296 · outbound

This paper cites An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics An integrated tcga pan-cancer clinical data resource to drive high-quality survival outcome analytics

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:46.008843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.489460Z digest=sha256:01e436c65827d85576f359b9a53279951761498b43ad8e8e446cf9bb0397d74e

Observation 42bdd5a2-a38c-43a1-b58b-325d3dbc5e20 · outbound

This paper cites Deep generative modeling for single-cell transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Deep generative modeling for single-cell transcriptomics

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.971803Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.504207Z digest=sha256:30796b39760f359c1707a108af07aa84fe74e479da663ced933106dc12c9017b

Observation 17dbd77b-341b-409f-897a-7202cedfb179 · outbound

This paper cites A visual-language foundation model for computational pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A visual-language foundation model for computational pathology

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.945232Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.514318Z digest=sha256:e17a52882becda66575ef58d745eaed5e6e05ead5fd8b90404c3a87b2edf7c42

Observation def5f0a1-a7b8-424d-9296-b4e7c67a5b91 · outbound

This paper cites A multimodal generative ai copilot for human pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A multimodal generative ai copilot for human pathology

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.925374Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.522135Z digest=sha256:482902ead5b647c19414ea29e117c93218adbcc1614e8b36e25820e32edcd872

Observation 13379a2c-8a83-4280-9844-37a064ab5c08 · outbound

This paper cites Benchmarking atlas-level data integration in single-cell genomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking atlas-level data integration in single-cell genomics

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.906187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.529930Z digest=sha256:472391bd30e70b77a39dac245e4f519d0cbca792632ac405c3f0da87cc3c701f

Observation 08b46de9-7ab7-43f4-904c-19cc95c78975 · outbound

This paper cites Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Pathbench: A comprehensive comparison benchmark for pathology foundation models towards precision oncology, 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.880737Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.534338Z digest=sha256:4ba45050e920afce8836b513761382de67c1cf75bef51b2eb19d95988d8b59ab

Observation afc72521-1ec8-4292-90ec-578300f3dbd9 · outbound

This paper cites Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.841908Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.543086Z digest=sha256:78615eb6efdaf86027283eff74efa4d513032a3f521f604beb246f921d240f79

Observation 8c381126-409f-44d2-be0e-224d4b673c19 · outbound

This paper cites Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtyping, 2025

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.801937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.554062Z digest=sha256:6852cac22eb1d60d2456128c680e89217776cba04077ed9e2086bd7cfbf5eaf6

Observation cfb05ed4-65ea-4923-8782-25c631603013 · outbound

This paper cites Unsupervised deep disentangled representation of single-cell omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Unsupervised deep disentangled representation of single-cell omics

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.782551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.568981Z digest=sha256:1046e8afcc6f05546097bdcdbfa322bb1515c14129d272837e7c0431dc82438f

Observation f620debc-5cde-49d2-b13e-fad1b85a3446 · outbound

This paper cites DINOv2: Learning Robust Visual Features without Supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics DINOv2: Learning Robust Visual Features without Supervision

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.578753Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.578753Z digest=sha256:9e51cacf46586777620f5ad7f9fb3474f7c9cd20b42e7f78f4dac24ff4bee174

Observation 197a3e7c-3cdd-451a-bdcd-b51f2c593f3a · outbound

This paper cites Spatial components of molecular tissue biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatial components of molecular tissue biology

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.756419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.585048Z digest=sha256:155c14fca3c14b4f2eb7cce9c0fdbbbce1ee3655d3a9799f200f40d5944aec3b

Observation 0420772a-fb2f-42d3-b55d-a5887fd0608a · outbound

This paper cites Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.712740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.598566Z digest=sha256:37399ea6b71f8b5c01a3e55eee6ac0d78ccd8fe9854ff089f34502cfeef562e1

Observation fa24f5de-68ba-4cd8-8faf-4ad39970c2ae · outbound

This paper cites Learning transferable visual models from natural language supervision.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Learning transferable visual models from natural language supervision

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.691220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.606099Z digest=sha256:5ec4db6e8de43ac9ef4cd7ac38028532c28e2f7b9a2fb2bc997ac1e393471997

Observation b1a43759-34a1-4230-a3c8-41e2cfc11e79 · outbound

This paper cites Exploring tissue architecture using spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Exploring tissue architecture using spatial transcriptomics

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.654361Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.614182Z digest=sha256:9b87c3e6253269257c34638bb8c549bfc73f5eff882a9734289217e9d29fd416

Observation b1b41bd8-6c26-4a13-9b9f-36ee374d49a0 · outbound

This paper cites Universal cell embeddings: A foundation model for cell biology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Universal cell embeddings: A foundation model for cell biology

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.621776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.622143Z digest=sha256:b030b5793f92ea46d1e8351002aa2f5caabff654ca0d3b98065a45f7310df9dc

Observation 6e3eda38-b1f6-4bee-aa16-191eeecd938c · outbound

This paper cites H-optimus-0, 2024.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics H-optimus-0, 2024

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.588421Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.628196Z digest=sha256:9ed9520d4a84d1ff8f0bf5b606aebdde21270dd2c5e4f7f12e33d4f1137cc24d

Observation 0c549adb-b4e4-4adf-a2f7-0012f673170d · outbound

This paper cites Nicheformer: a foundation model for single-cell and spatial omics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nicheformer: a foundation model for single-cell and spatial omics

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.565290Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.636405Z digest=sha256:448a297ddb0cf50ef2d027bab674eaa6ad7c1f0941e43110b1011bb29b9e44d0

Observation ceaf244e-8a0a-4113-9fb8-207cb641b399 · outbound

This paper cites A deep learning model to predict RNA -seq expression of tumours from whole slide images.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A deep learning model to predict RNA -seq expression of tumours from whole slide images

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.525544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.648396Z digest=sha256:7638bafdeb62d99ce1cf2f3eaa59f46382274a166b64bec9069ad8b9705b4187

Observation 46434532-6a60-4252-9133-f820db22e174 · outbound

This paper cites Kunz, Juan A.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Kunz, Juan A

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.499598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.654588Z digest=sha256:0473ab559c33e64bf0cc2ead7c0840541c1a01b19772ad1ab2a7bbbe93eb664b

Observation b379101e-d767-473d-8722-9853f4236cf0 · outbound

This paper cites Generating highly accurate pathology reports from gigapixel whole slide images with histogpt.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Generating highly accurate pathology reports from gigapixel whole slide images with histogpt

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.473111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.663364Z digest=sha256:daa4625f4429bfd36a05dab644a8dfbf96f6ae527a661a687473ac7d624fa8a2

Observation 72a9f0c3-9235-426a-b903-bdce313c127e · outbound

This paper cites Molecular-driven Foundation Model for Oncologic Pathology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Molecular-driven Foundation Model for Oncologic Pathology

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.672000Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.672000Z digest=sha256:19bc668f28696c88987283b35e44ec8742967e22f3ff379ba75bb05ac56ff2d0

Observation 3aeb2f53-fc19-4df6-af9d-1085d4f69985 · outbound

This paper cites Williams, Nicholas M.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Williams, Nicholas M

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.442798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.680988Z digest=sha256:7b19e693a1109e79013c85cc01143ca64820d2e661b05cb730a4ffb50ffe02c5

Observation 62e78b30-8f09-48dc-8792-03cfa8ef02f4 · outbound

This paper cites A foundation model for clinical-grade computational pathology and rare cancers detection.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A foundation model for clinical-grade computational pathology and rare cancers detection

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.407465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.694231Z digest=sha256:9c5b65f3254b5934d41b283a71b02a216ef175be3216206f6a2224a15e0921b8

Observation 73c735b4-5f0c-413e-ba06-d9b4c92e74e8 · outbound

This paper cites Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.388233Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.708865Z digest=sha256:57b958e5ee6c1840b8c79df4110fc6f5915a13d0ce83ec1d4c7e4657ea7d270c

Observation 67dba3d3-51f5-4aa6-868b-6ed71f963fcf · outbound

This paper cites scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics scgpt-spatial: Continual pretraining of single-cell foundation model for spatial transcriptomics

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.357598Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.717324Z digest=sha256:a08091885483500dc7934974f125a3b747f87b1ab0ccb0f34b60de883285a4fd

Observation 5aaee62b-90e1-4128-be23-1ca9226b9a1a · outbound

This paper cites Transformer-based unsupervised contrastive learning for histopathological image classification.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Transformer-based unsupervised contrastive learning for histopathological image classification

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.331480Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.722255Z digest=sha256:caca191454be35985443cd1cfecaf4b8890f22b0be76c0d821928f6721597fee

Observation 51784aec-d918-4f1f-9dff-b541066a08f8 · outbound

This paper cites Retccl: Clustering-guided contrastive learning for whole-slide image retrieval.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Retccl: Clustering-guided contrastive learning for whole-slide image retrieval

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.299644Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.726993Z digest=sha256:f62e7a2b4d47a05768ac7f4f8fcd376d40a77a64b6fd69fe6331ce2154322fe5

Observation 73493bd8-664e-4887-b5a9-7c9e27800012 · outbound

This paper cites The cancer genome atlas pan-cancer analysis project.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics The cancer genome atlas pan-cancer analysis project

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.265815Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.733017Z digest=sha256:cb9cd9c9cf7f8057c269a7aaa3fd45c416cd724bcf732239d960e479147f194b

Observation 56ac51e5-c367-4fad-9247-1e3bd9ce3283 · outbound

This paper cites SCANPY : large-scale single-cell gene expression data analysis.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics SCANPY : large-scale single-cell gene expression data analysis

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.224778Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.738522Z digest=sha256:23b0edd59b5a6cf76d0668402686256cb748ed265c8cff5a04f3a22556fe0fcf

Observation 1af7e9ea-b883-4084-a3a0-293b03c59085 · outbound

This paper cites Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Nirschl, Joel Neal, Maximilian Diehn, Sen Yang, and Ruijiang Li

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.203141Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.744253Z digest=sha256:b01f9890fc2a07222af94969623fd962620420fd09d915e492c14c5b1fdcb8f0

Observation e119abec-4ad6-4f2a-90be-12ff760d85f6 · outbound

This paper cites Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Spatially resolved gene expression prediction from histology images via bi-modal contrastive learning

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.169549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.755846Z digest=sha256:0ec2d1b7085c0db84274ca1ec257fc7eccb9efffb4746ca5b975223a017c75a8

Observation 7b24b661-cf71-4e48-b559-7c652b4b7a10 · outbound

This paper cites A whole-slide foundation model for digital pathology from real-world data.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics A whole-slide foundation model for digital pathology from real-world data

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.125753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.761720Z digest=sha256:e50f3eda6622f0108ad9f063bcdbf0e11d5b4affb14f2a208c58c6332e870a6a

Observation 9b26c7d2-ff59-488c-b0bf-69492cb58693 · outbound

This paper cites Sigmoid loss for language image pre-training, 2023.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Sigmoid loss for language image pre-training, 2023

Reference 60

Resolution
unresolved
no resolver link, observed 2026-08-06T05:36:44.767357Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T05:36:44.767357Z digest=sha256:3c02a1507d532a9ae017d7a0d337a809d3b0536ea8f91ecc359cae1ababb2ceb

Observation c2bbf966-49f8-4b5f-aee3-ebd3d39e6b4e · outbound

This paper cites Accelerating data processing and benchmarking of ai models for pathology, 2025.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Accelerating data processing and benchmarking of ai models for pathology, 2025

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.089791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.775234Z digest=sha256:5fd3ebb702eb7b0821fcb9c1e6232eb8b626b1aa63aab4a9ee95984c691e7581

Observation 8a7e388f-ab7d-46aa-835a-ef8dbac8f23f · outbound

This paper cites Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.063340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.784657Z digest=sha256:64c792f0e2bcfccb3d19ff6a4573ce36619e2cf626dec04cfa4ea60b5bd391a8

Observation 3e47b16e-2e61-4b7d-afaf-3b0f9add296b · outbound

This paper cites Conrad, Emily J.

A Large-Scale Benchmark of Cross-Modal Learning for Histology and Gene Expression in Spatial Transcriptomics Conrad, Emily J

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T05:36:45.028296Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T05:36:44.790811Z digest=sha256:abefb722f62efd20de7ab6e49cf4a11591e0b4cc5ef0b50db869f1e02fd68e7c

Pith citing papers

No inbound Pith citation observations are available.