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Paper Citation Record · LEDGER

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN

As of 10 August 2026, this Paper Citation Record lists 23 of 23 outbound references and 1 inbound Pith citation observation for arXiv:2507.16978.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.16978 v1

Coverage vector

measured 23 of 23 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T15:05:25.176787Z

measured 24 of 24 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-29T11:47:02.193326Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-06-29T11:53:24.203583Z

Reference resolution

23 of 23 outbound references displayed

  • verified exact1
  • verified fuzzy14
  • unresolved8
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 25934a74-2b4e-46cc-9bf5-7b95fc2b29db · outbound

This paper cites write newline.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN write newline

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.117770Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.117770Z digest=sha256:b44335d640728282dfd40afae344043b5c607d5ad019fc3f0daa52b7c46f3723

Observation 6949ce44-2ca0-414a-90fb-2e3aae6f51f0 · outbound

This paper cites F., Gish, W., Miller, W., Myers, E.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN F., Gish, W., Miller, W., Myers, E

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.371196Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.121676Z digest=sha256:35d2d6329bd03be072259bf57771f343aceff50ab9db9c0939f39b9b88297f3d

Observation 9ade6c58-92e4-4ab9-875c-328420acdc0e · outbound

This paper cites B., Lespiau, J.-B., Damoc, B., Clark, A., et al.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN B., Lespiau, J.-B., Damoc, B., Clark, A., et al

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.363178Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.124459Z digest=sha256:b5d2b30375012b532ca3257eb5fb779cb9d96b0275cb2e73c3ee7b31f386fa62

Observation ae3c10d3-b6b8-4dbb-b3d9-4e9726fb1593 · outbound

This paper cites H., Oteri, F., Dallago, C., Trop, E., de Almeida, B.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN H., Oteri, F., Dallago, C., Trop, E., de Almeida, B

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.354549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.127133Z digest=sha256:6f57924ace0d752000213a3cd533c1d695aff71d62ee8c70c3bbbef54d15c69c

Observation 20874b72-10f3-4771-810a-3d83ed5fdabb · outbound

This paper cites E., Lomeli, M., Hosseini, L., and Jegou, H.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN E., Lomeli, M., Hosseini, L., and Jegou, H

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.346861Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.130157Z digest=sha256:66c9c84a3ee8b7545ba51174520572f76ecfad51c64e38b98d7f8b02a7e76eb5

Observation 871f8ab7-8623-4cfd-abe1-239dbf10b3a0 · outbound

This paper cites A., Gillick, D., Bikel, D.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN A., Gillick, D., Bikel, D

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.338888Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.132910Z digest=sha256:f7bcfea68e9fe54c144791fe385df27967e7fe901b849220e9a93e27037dbc8c

Observation d557d3b8-a859-4cca-98c5-f2fff69d4a72 · outbound

This paper cites Accelerating large-scale inference with anisotropic vector quantization.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Accelerating large-scale inference with anisotropic vector quantization

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.331093Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.135660Z digest=sha256:311602ebbda24fe17ae8e3c38e73992e54a32b25e014eadd0b2ee57ddc284aa6

Observation 2aa9b4ac-4eeb-4ca8-98ee-d22e36e3e7c3 · outbound

This paper cites an unresolved cited work.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Unresolved cited work

Reference 8

Resolution
unresolved
raw_fallback, observed 2026-08-06T15:05:25.323220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.138475Z digest=sha256:7a195ea38e171bfb9278487302f684520ae3d46e2daa31761d4e2e3e82d20261

Observation 6fcede86-aeed-49de-911f-b11153ac32eb · outbound

This paper cites Billion-scale similarity search with gpus.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Billion-scale similarity search with gpus

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.140955Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.140955Z digest=sha256:b476079c34fe9ab8b03ddde9849d80c91068422cabbdcae8026cb6db79233ff4

Observation c2b897a7-7d9f-49c7-9f22-e053f076e0c6 · outbound

This paper cites Product quantization for nearest neighbor search.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Product quantization for nearest neighbor search

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.143403Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.143403Z digest=sha256:10e8fe487e9602e261999e80da30c237301dccb90a6b351bc930d778824d6b13

Observation bddbe1f4-e9e2-402c-979c-0fcc3c69e7bb · outbound

This paper cites Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.309765Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.146149Z digest=sha256:dbbd5207bd1fae73547b60fa9709ac78da7e301601167949f2dbccf6218c92b7

Observation e6fff5b6-fd30-42b7-b0f6-d9b21e0e550d · outbound

This paper cites an unresolved cited work.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-08-06T15:05:25.301081Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.148582Z digest=sha256:e11842295284c98564b12374e0619d0a1543ccc8fa5973b01bb8595bda50a405

Observation 1b856e08-b34b-4da1-bcdb-6e68c9e2d1bf · outbound

This paper cites P., Mulaudzi, T.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN P., Mulaudzi, T

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.293417Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.151234Z digest=sha256:c9227ace3f15f678b8cc5509071c20f93db7ce6605f21fdc70ba8a77bfa9ab80

Observation 2dcb8161-7cf2-4f33-9205-8293db826270 · outbound

This paper cites Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.285424Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.153930Z digest=sha256:3833e2707aace278cf8dfe166ee24273cba1d7b2bf74f67520332e53285a09e9

Observation 4b66ebda-5c3d-4686-9480-65afb6cb791e · outbound

This paper cites Leveraging large language models for metagenomic analysis.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Leveraging large language models for metagenomic analysis

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.275499Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.156365Z digest=sha256:909f17a60fc27249dd4023ee2d5223bd21a5e23c61c6e57bfc206ba13eacee25

Observation a9997dbf-daf3-46c6-8128-15d1cd53a218 · outbound

This paper cites A., Mell, J.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN A., Mell, J

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.267613Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.158773Z digest=sha256:fd32125d602d7e7e9a2b9b4a8ce813c051f1c3f3c45056e1acdfded92117720f

Observation a4e255af-7b61-46c4-88c0-16d34a61e084 · outbound

This paper cites and Thompson, G.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN and Thompson, G

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.259877Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.161336Z digest=sha256:46b61817f61c87714f8d0acdb47d99f4ca46d395f8238e50e48d735f884a64f2

Observation 12e6b7ba-660e-4f72-89f6-fa3eb89ccfee · outbound

This paper cites Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Reference 18

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.163769Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.163769Z digest=sha256:153790d23fd588c47d8f31f89bca6a48b578cb286cf1bc48a2df065bdb2bd474

Observation 70ff1bf9-9fde-4533-bf45-96ffa0418055 · outbound

This paper cites Nearest neighbor search on embeddings rapidly identifies distant protein relations.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Nearest neighbor search on embeddings rapidly identifies distant protein relations

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.252023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.166478Z digest=sha256:bde762637137ce3665407ef0a9ec7c7e8b11cb573dc272ca9841ef559718afaa

Observation dc1a8947-80f3-4757-b5d3-a26bac0a4620 · outbound

This paper cites and S \"o ding, J.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN and S \"o ding, J

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-06T15:05:25.243723Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.168777Z digest=sha256:dc19dd7bd29229af2429ad0d3a32f9ac89b36ebe8fd30d142b1b6a3dd0f9ee1f

Observation 5fced642-788f-4a2e-88d9-b75b6ff9b63d · outbound

This paper cites ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity

Reference 21

Resolution
verified exact
doi, observed 2026-08-06T15:05:25.205054Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=arxiv_source observed=2026-08-06T15:05:25.171525Z digest=sha256:3567a3b065ce960b0bda5482209fa94ef54eef42c2ee5cca59b138fd014233d0

Observation 87f1a1fa-8da8-420e-a98b-113e59289e03 · outbound

This paper cites Approximate Nearest Neighbor Negative Contrastive Learning for Dense Text Retrieval.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN Approximate Nearest Neighbor Negative Contrastive Learning for Dense Text Retrieval

Reference 22

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.174089Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.174089Z digest=sha256:6c0882d5d76a7a67194096304bca0fb1a9c9a1d492b39086b5edab09b247a0a8

Observation 1b3ad77e-0132-4532-86e3-98db3743104e · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 23

Resolution
unresolved
no resolver link, observed 2026-08-06T15:05:25.176787Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T15:05:25.176787Z digest=sha256:253748fd97c666084226e6507a5f1f0a2633ecf2ec5a69a12a4309461cae8cfa

Pith citing papers

Observation 0bd12173-a570-44c4-a2b3-390e46404245 · inbound

Adaptive Multimodal Agents-Based Framework for Automatic Workflow Execution cites this paper.

Adaptive Multimodal Agents-Based Framework for Automatic Workflow Execution Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN

Reference 21

Resolution
verified exact
arxiv_id, observed 2026-06-29T11:53:24.204838Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

source=pdf_text observed=2026-06-29T11:47:02.193326Z digest=sha256:a8999d7e3ee87721d51e0de0e8866a004d024834ef643a12d9beee5931c5932c