Paper Citation Record · LEDGER

Predicting and generating antibiotics against future pathogens with ApexOracle

As of 9 August 2026, this Paper Citation Record lists 45 of 45 outbound references and 0 inbound Pith citation observations for arXiv:2507.07862.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.07862 v1

Coverage vector

measured 45 of 45 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T18:35:36.220443Z

measured 45 of 45 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

45 of 45 outbound references displayed

verified exact0
verified fuzzy24
unresolved21
parse uncertain0
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation e2d90b7c-bf89-47d1-b734-7649cbaf4e1f · outbound

This paper cites Antimicrobial resistance: tackling a crisis for the health and wealth of nations.

Predicting and generating antibiotics against future pathogens with ApexOracle Antimicrobial resistance: tackling a crisis for the health and wealth of nations

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.997852Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 44ec3136-f1e9-4683-beef-5b33abdebf12 · outbound

This paper cites & Collins, J.

Predicting and generating antibiotics against future pathogens with ApexOracle & Collins, J

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.983319Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation bcc9b764-7bb9-4624-9e30-778cf3092023 · outbound

This paper cites R., Torres, M.

Predicting and generating antibiotics against future pathogens with ApexOracle R., Torres, M

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.968098Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 91936f1d-fba4-4caf-a48c-c193d8cefe6a · outbound

This paper cites D.et al.Discovery of antimicrobial peptides in the global micro- biome with machine learning.Cell187, 3761–3778 (2024).

Predicting and generating antibiotics against future pathogens with ApexOracle D.et al.Discovery of antimicrobial peptides in the global micro- biome with machine learning.Cell187, 3761–3778 (2024)

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.951486Z

Source-reported events for the cited work

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Observation 76b4d19b-9131-4170-9274-2814fb5face2 · outbound

This paper cites D., Peng, J.

Predicting and generating antibiotics against future pathogens with ApexOracle D., Peng, J

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.934289Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 886590e1-d22f-49d4-b4d4-88a8d6ca7022 · outbound

This paper cites D.et al.Mining for encrypted peptide antibiotics in the human proteome.

Predicting and generating antibiotics against future pathogens with ApexOracle D.et al.Mining for encrypted peptide antibiotics in the human proteome

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.915967Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 87b1afe2-5539-4ce1-b98c-c4d148305a7b · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.900277Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3f87568c-8067-499d-946f-c6ffb799dee0 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 8

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.885475Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8a662106-75a5-4ef2-9c56-4ee8f8841419 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.870856Z

Source-reported events for the cited work

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Observation 3678f6d7-e955-4f92-b34e-37ae16357476 · outbound

This paper cites & Dong, G.

Predicting and generating antibiotics against future pathogens with ApexOracle & Dong, G

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.854395Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d77fccc9-f5df-4fa3-8860-5e9834b80dc1 · outbound

This paper cites Briefings in Bioinformatics26, bbae644 (2025).

Predicting and generating antibiotics against future pathogens with ApexOracle Briefings in Bioinformatics26, bbae644 (2025)

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.839336Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e786cb90-73fa-4a33-a52c-f7ce585a9574 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.823317Z

Source-reported events for the cited work

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Observation df85b651-d09b-4ae1-afc2-f2d4097f1071 · outbound

This paper cites Nature626, 177–185 (2024).

Predicting and generating antibiotics against future pathogens with ApexOracle Nature626, 177–185 (2024)

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.808398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 932bbca0-3c13-4fcd-8aca-49295ec48932 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 14

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.792884Z

Source-reported events for the cited work

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Observation 38765bdb-6b5e-4ae2-9351-610b4f6a6cd7 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 15

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.777822Z

Source-reported events for the cited work

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Observation b9c50767-a786-4fcd-bcbb-59e0741cb893 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.763264Z

Source-reported events for the cited work

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Observation 1809027b-14d6-4f07-bb10-20fa342852f9 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 17

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.749168Z

Source-reported events for the cited work

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Observation 2007d463-453f-4373-a022-cb52d4e8fa0a · outbound

This paper cites Research squarers–3 (2024).

Predicting and generating antibiotics against future pathogens with ApexOracle Research squarers–3 (2024)

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.734041Z

Source-reported events for the cited work

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Observation 1cecaced-c328-4e23-bb2a-e0ee5dfcf98d · outbound

This paper cites Qwen2.5 Technical Report.

Predicting and generating antibiotics against future pathogens with ApexOracle Qwen2.5 Technical Report

Reference 19

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Source-reported events for the cited work

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Observation a319b17e-5fab-44df-9fec-4346fa6c7b02 · outbound

This paper cites & Aspuru-Guzik, A.

Predicting and generating antibiotics against future pathogens with ApexOracle & Aspuru-Guzik, A

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.718527Z

Source-reported events for the cited work

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Observation dda80c8f-ac26-42a4-93bb-44dcc413ebd5 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 21

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.702891Z

Source-reported events for the cited work

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Observation 8f61f749-60d7-4139-a181-41c4d5868dd1 · outbound

This paper cites M.et al.A deep learning approach to antibiotic discovery.Cell180, 688–702 (2020).

Predicting and generating antibiotics against future pathogens with ApexOracle M.et al.A deep learning approach to antibiotic discovery.Cell180, 688–702 (2020)

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.688579Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation f8998bcc-4980-47a6-8ffe-40e8c4f7be05 · outbound

This paper cites & Tang, J.

Predicting and generating antibiotics against future pathogens with ApexOracle & Tang, J

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.673621Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c1767fd9-1daa-449a-929b-aa6e4f0c8d49 · outbound

This paper cites UniGEM: A Unified Approach to Generation and Property Prediction for Molecules.

Predicting and generating antibiotics against future pathogens with ApexOracle UniGEM: A Unified Approach to Generation and Property Prediction for Molecules

Reference 24

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Source-reported events for the cited work

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Observation 08f9e5f0-6499-432f-8696-0f7bc5fe12fe · outbound

This paper cites ChemBERTa-2: Towards Chemical Foundation Models.

Predicting and generating antibiotics against future pathogens with ApexOracle ChemBERTa-2: Towards Chemical Foundation Models

Reference 25

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Source-reported events for the cited work

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Observation f64dba81-2f2b-49c4-99ff-3400ddc9202d · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 26

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.658412Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d82fa408-1165-49cb-a529-eb495da4b136 · outbound

This paper cites Genomics, proteomics & bioinformatics19, 602–610 (2021).

Predicting and generating antibiotics against future pathogens with ApexOracle Genomics, proteomics & bioinformatics19, 602–610 (2021)

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.644035Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation affa0245-37df-428d-b145-00111eb031ad · outbound

This paper cites E.et al.Uniref clusters: a compre- hensive and scalable alternative for improving sequence similarity searches.Bioinformatics 31, 926–932 (2015).

Predicting and generating antibiotics against future pathogens with ApexOracle E.et al.Uniref clusters: a compre- hensive and scalable alternative for improving sequence similarity searches.Bioinformatics 31, 926–932 (2015)

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.628917Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 59834817-4cc7-4cbf-b432-a8f4b0e1f7be · outbound

This paper cites Uniprot: a worldwide hub of protein knowledge.Nucleic acids research 47, D506–D515 (2019).

Predicting and generating antibiotics against future pathogens with ApexOracle Uniprot: a worldwide hub of protein knowledge.Nucleic acids research 47, D506–D515 (2019)

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.614167Z

Source-reported events for the cited work

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Observation 9ba4fd53-bc0b-4cb7-917f-3875914af0bc · outbound

This paper cites J.et al.Cyclops: generating virtual libraries of cyclized and constrained peptides including nonnatural amino acids.Journal of chemical information and modeling51, 829– 836 (2011).

Predicting and generating antibiotics against future pathogens with ApexOracle J.et al.Cyclops: generating virtual libraries of cyclized and constrained peptides including nonnatural amino acids.Journal of chemical information and modeling51, 829– 836 (2011)

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.600214Z

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Observation dcbfcaf9-8e45-4cb5-9919-31bcf689a6ee · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 31

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.585098Z

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Observation d35ab758-578f-43c5-8d6e-75da46efdce0 · outbound

This paper cites M., Corbett, P.

Predicting and generating antibiotics against future pathogens with ApexOracle M., Corbett, P

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.570623Z

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Observation a96f041e-2160-44be-b057-701b89fe1714 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 33

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.555950Z

Source-reported events for the cited work

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Observation 3c0e7220-e8bb-4019-93e5-288dc74b42d4 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 34

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.540340Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation bf71dae5-70f7-4767-bd7c-f033d89b2d1e · outbound

This paper cites & Xie, S.

Predicting and generating antibiotics against future pathogens with ApexOracle & Xie, S

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.525819Z

Source-reported events for the cited work

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Observation 80a3cff8-1135-49db-a78b-9fc385c6e5b5 · outbound

This paper cites Simple Guidance Mechanisms for Discrete Diffusion Models.

Predicting and generating antibiotics against future pathogens with ApexOracle Simple Guidance Mechanisms for Discrete Diffusion Models

Reference 36

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Observation fe87c942-e6eb-444c-b99f-5cf144101604 · outbound

This paper cites qwen - max -0125.

Predicting and generating antibiotics against future pathogens with ApexOracle qwen - max -0125

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-06T18:35:35.667013Z

Source-reported events for the cited work

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Observation 01861af6-629a-437e-b332-7c4eed4fe0fe · outbound

This paper cites Describe its notable p h y s i o l o g i c a l traits.

Predicting and generating antibiotics against future pathogens with ApexOracle Describe its notable p h y s i o l o g i c a l traits

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.510743Z

Source-reported events for the cited work

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Observation 47c470e2-1fae-48de-8a0a-0e8916f47b56 · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 39

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.494871Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 2013aa87-cb31-4170-8a5a-423f2bd28e4a · outbound

This paper cites Describe the mo le cu la r m e c h a n i s m s by which these confer r e s i s t a n c e to p a r t i c u l a r a n t i b i o t i c s.

Predicting and generating antibiotics against future pathogens with ApexOracle Describe the mo le cu la r m e c h a n i s m s by which these confer r e s i s t a n c e to p a r t i c u l a r a n t i b i o t i c s

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.479566Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4443cb3d-e618-4b75-a4d3-63f2b4daa7d9 · outbound

This paper cites Explain the m e c h a n i s m s by which these a n t i b i o t i c s exert their effects on the strain.

Predicting and generating antibiotics against future pathogens with ApexOracle Explain the m e c h a n i s m s by which these a n t i b i o t i c s exert their effects on the strain

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.462390Z

Source-reported events for the cited work

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Observation 9394e242-935e-4a7d-8260-8d4079ea03df · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.447301Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 7cf67166-998e-4832-b65a-d50c165d18d3 · outbound

This paper cites Please make sure to cross - r ef er en ce these a l t e r n a t i v e ID systems when se ar ch in g for relevant i n f o r m a t i o n.

Predicting and generating antibiotics against future pathogens with ApexOracle Please make sure to cross - r ef er en ce these a l t e r n a t i v e ID systems when se ar ch in g for relevant i n f o r m a t i o n

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.432699Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9cb73e60-6e56-4b17-8f2e-7ac25a912d8b · outbound

This paper cites an unresolved cited work.

Predicting and generating antibiotics against future pathogens with ApexOracle Unresolved cited work

Reference 44

Resolution: unresolved; raw_fallback, observed 2026-08-06T18:35:36.417005Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9593ae29-49fd-42cd-8969-9fc4f6fec752 · outbound

This paper cites " " }] , e x t r a _ b o d y ={.

Predicting and generating antibiotics against future pathogens with ApexOracle " " }] , e x t r a _ b o d y ={

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T18:35:36.401543Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Pith citing papers

No inbound Pith citation observations are available.