Paper Citation Record · LEDGER

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects

As of 9 August 2026, this Paper Citation Record lists 42 of 42 outbound references and 0 inbound Pith citation observations for arXiv:2507.05265.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2507.05265 v1

Coverage vector

measured 42 of 42 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-06T22:36:04.596043Z

measured 42 of 42 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

42 of 42 outbound references displayed

verified exact2
verified fuzzy15
unresolved24
parse uncertain0
malformed identifier1
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 6a135c2b-1e84-4db0-bbc3-3c7684696c71 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 1

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:10.188231Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c51f50da-d8cd-4ae2-81b7-a6d5bcdc0b66 · outbound

This paper cites P.et al.An integrated encyclopedia of dna elements in the human genome.Nature489, 57 (2012).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects P.et al.An integrated encyclopedia of dna elements in the human genome.Nature489, 57 (2012)

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:10.059929Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ce256fcb-d6ef-44af-afd7-697607e51560 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 3

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:09.926641Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b238522f-84c6-4b58-89be-bd5e694cdc40 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 4

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:09.797594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5f60e00e-e11e-4fae-8041-e18390ea6bf9 · outbound

This paper cites & Troyanskaya, O.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects & Troyanskaya, O

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:09.680793Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6ae1840e-b041-48ab-b1e9-22830fc21496 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 6

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:09.527768Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8066054a-0f2e-4802-be5f-ef4082715028 · outbound

This paper cites On the Opportunities and Risks of Foundation Models.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects On the Opportunities and Risks of Foundation Models

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:01.702480Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b72fb113-b434-4d43-8e06-2d4d6deb2c6c · outbound

This paper cites URL https://link.springer.com/10.1007/ s13042-024-02443-6.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects URL https://link.springer.com/10.1007/ s13042-024-02443-6

Reference 8

Resolution: malformed identifier; raw_fallback, observed 2026-08-06T22:36:09.382850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5b6ba019-defd-41de-b1cb-01aa3fcf6d57 · outbound

This paper cites URL https://pmc.ncbi.nlm.nih.gov/articles/PMC11252241/.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects URL https://pmc.ncbi.nlm.nih.gov/articles/PMC11252241/

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:09.244206Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 64120cff-1577-4197-b664-e329400ff9c3 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:01.940841Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bb598651-25d5-41f8-b61a-96c68d331a69 · outbound

This paper cites & Henikoff, S.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects & Henikoff, S

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:09.108181Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3d1db509-b690-4b07-8606-63bb311673fa · outbound

This paper cites T.et al.Systematic localization of common disease-associated variation in regulatory dna.Science337, 1190–1195 (2012).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects T.et al.Systematic localization of common disease-associated variation in regulatory dna.Science337, 1190–1195 (2012)

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:08.961001Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0a639e47-ef46-44d1-955f-1ae710012c0a · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:02.166688Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 25beeed8-339f-4e63-835d-0c3b54c07a0a · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 14

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:08.810033Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c1fea6c3-0970-4dba-8c00-9fdfb44def7b · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 15

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:08.680783Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8580de1e-a614-4dd2-aeff-5f04d609b6e1 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:08.590543Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 969abbd6-7b5f-43ee-9cf4-490886bb2b80 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 17

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:08.414473Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5e12b0a4-9c59-4aff-a0c2-3dc755d76859 · outbound

This paper cites M., Wong, A.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects M., Wong, A

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:08.295715Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b4ece1fe-8715-4a47-9094-7b8ed7e68fea · outbound

This paper cites & Koo, P.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects & Koo, P

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:08.129920Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e46e8608-35ca-446b-bad2-d6e2e78771a3 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 20

Resolution: verified exact; raw_fallback, observed 2026-08-06T22:36:05.138947Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 505ae8a0-f63f-4537-9754-ba9d7a19446e · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 21

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:07.926046Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e818cedc-5602-4885-bb37-0b9c2d7366b8 · outbound

This paper cites A.et al.Evaluation of grch38 and de novo haploid genome assem- blies demonstrates the enduring quality of the reference assembly.Genome research27, 849–864 (2017).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects A.et al.Evaluation of grch38 and de novo haploid genome assem- blies demonstrates the enduring quality of the reference assembly.Genome research27, 849–864 (2017)

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:07.719352Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 372569fd-aeee-4a19-8ae4-47d7f1deb7c1 · outbound

This paper cites M., Sirotkin, K., Ward, M.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects M., Sirotkin, K., Ward, M

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:07.509461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 566001fb-1fb7-428a-b85d-705ccee8eed8 · outbound

This paper cites & Bucher, P.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects & Bucher, P

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:07.323491Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 53f91884-08df-41fb-8fb7-cf176434f02e · outbound

This paper cites & Chong, K.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects & Chong, K

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:07.110042Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b3ff167c-3757-4e1e-9c59-a319a43b78ac · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 26

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:06.971240Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b5e6d66e-14aa-4b4e-bf68-1c6beb080c94 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 27

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:06.815458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9fa30b2d-b8e2-4f01-ba55-b4f7df328b33 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 28

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:06.652242Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c76384c8-2de8-4f7a-bf3d-f736196279ef · outbound

This paper cites J.et al.Clinvar: improvements to accessing data.Nucleic Acids Research48, D835–D844 (2019).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects J.et al.Clinvar: improvements to accessing data.Nucleic Acids Research48, D835–D844 (2019)

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:06.439511Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a6365ea5-a06d-4d85-adca-5dc8f7110f85 · outbound

This paper cites Bioinformatics26, 1112–1118 (2010).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Bioinformatics26, 1112–1118 (2010)

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:06.268426Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 83494ef2-7f81-4db8-8e3c-3234a74a3c6a · outbound

This paper cites A.et al.Mondo: unifying diseases for the world, by the world.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects A.et al.Mondo: unifying diseases for the world, by the world

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:06.086322Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 34334d4c-3d8e-437e-985f-43631c49a10a · outbound

This paper cites Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:03.728450Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 77532c9c-7c37-4567-bf33-f30e37a39657 · outbound

This paper cites Attention is all you need.Advances in Neural Information Processing Systems(2017).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Attention is all you need.Advances in Neural Information Processing Systems(2017)

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:03.814875Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d8948aea-5390-4b63-a046-9855a7cd6a88 · outbound

This paper cites Smarter, Better, Faster, Longer: A Modern Bidirectional Encoder for Fast, Memory Efficient, and Long Context Finetuning and Inference.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Smarter, Better, Faster, Longer: A Modern Bidirectional Encoder for Fast, Memory Efficient, and Long Context Finetuning and Inference

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:03.887384Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 27d3c355-dadf-4105-9dcb-5ce7ba159d2d · outbound

This paper cites SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study

Reference 35

Resolution: verified exact; local_arxiv, observed 2026-08-06T22:36:04.836456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c3f31c11-0f86-456c-9a57-45a3d64f990d · outbound

This paper cites Neural Machine Translation of Rare Words with Subword Units.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Neural Machine Translation of Rare Words with Subword Units

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:04.002548Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e8aa222a-7cc1-4a16-955b-be1a5600cfbd · outbound

This paper cites SentencePiece: A simple and language independent subword tokenizer and detokenizer for Neural Text Processing.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects SentencePiece: A simple and language independent subword tokenizer and detokenizer for Neural Text Processing

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:04.105462Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 899ea695-f1c1-4830-ba49-ebac2f76ba11 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 38

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:05.925904Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a96b6e74-56fe-4f43-90e9-aa8fb5b5efad · outbound

This paper cites BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Reference 39

Resolution: unresolved; no resolver link, observed 2026-08-06T22:36:04.242748Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 530c9f96-ea8d-4e94-8d95-1c3b845a7e15 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 40

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:05.701424Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6aae409e-963a-485b-9541-c041668db8f9 · outbound

This paper cites M.et al.A community effort to optimize sequence-based deep learning models of gene regulation.Nature biotechnology1–11 (2024).

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects M.et al.A community effort to optimize sequence-based deep learning models of gene regulation.Nature biotechnology1–11 (2024)

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-06T22:36:05.463675Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 41292805-19b8-4fba-ae0f-ce66fff18ed0 · outbound

This paper cites an unresolved cited work.

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-06T22:36:05.318928Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Pith citing papers

No inbound Pith citation observations are available.