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Pieter Rein ten Wolde

Identifiers

  • name variant Pieter Rein ten Wolde 0.60 · backfill

Papers (67)

  1. State- versus Reaction-Based Information Processing in Biochemical Networks q-bio.MN · 2025 · author #4
  2. The power of being explicit: demystifying work, heat, and free energy in the physics of computation cond-mat.stat-mech · 2018 · author #3
  3. Theory of circadian metabolism q-bio.MN · 2018 · author #3
  4. Quantifying fluctuations in reversible enzymatic cycles and clocks physics.bio-ph · 2018 · author #2
  5. Robustness of clocks to input noise q-bio.MN · 2017 · author #3
  6. eGFRD in all dimensions q-bio.MN · 2017 · author #10
  7. Optimal entrainment of circadian clocks in the presence of noise physics.bio-ph · 2017 · author #3
  8. Spatial-Stochastic Simulation of Reaction-Diffusion Systems q-bio.MN · 2017 · author #2
  9. Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations physics.bio-ph · 2016 · author #3
  10. Robustness of synthetic oscillators in growing and dividing cells physics.bio-ph · 2016 · author #3
  11. A Thermodynamically consistent model of the post-translational Kai circadian clock physics.bio-ph · 2016 · author #3
  12. Multiscale simulations of anisotropic particles combining Brownian Dynamics and Green's Function Reaction Dynamics q-bio.MN · 2016 · author #3
  13. Fundamental costs in the production and destruction of persistent polymer copies cond-mat.stat-mech · 2016 · author #2
  14. Biochemical machines for the interconversion of mutual information and work cond-mat.stat-mech · 2016 · author #3
  15. The accuracy of telling time via oscillatory signals q-bio.MN · 2016 · author #2
  16. Optimal Prediction by Cellular Signaling Networks q-bio.MN · 2015 · author #3
  17. Discrete gene replication events drive coupling between the cell cycle and circadian clocks q-bio.MN · 2015 · author #3
  18. Fundamental Limits to Cellular Sensing q-bio.MN · 2015 · author #1
  19. The thermodynamics of computational copying in biochemical systems q-bio.MN · 2015 · author #3
  20. The robustness of proofreading to crowding-induced pseudo-processivity in the MAPK pathway q-bio.MN · 2014 · author #2
  21. The lower bound on the precision of transcriptional regulation q-bio.MN · 2014 · author #2
  22. Prediction and Dissipation in Biochemical Sensing q-bio.MN · 2013 · author #3
  23. The importance of crowding in signaling, genetic, and metabolic networks q-bio.MN · 2013 · author #1
  24. Multiplexing oscillatory biochemical signals q-bio.MN · 2013 · author #2
  25. How biochemical resources determine fundamental limits in cellular sensing q-bio.MN · 2013 · author #2
  26. Spatial partitioning improves the reliability of biochemical signaling q-bio.MN · 2013 · author #3
  27. Fundamental Limits on Sensing Chemical Concentrations with Linear Biochemical Networks q-bio.MN · 2012 · author #2
  28. The macroscopic effects of microscopic heterogeneity q-bio.MN · 2012 · author #2
  29. Protein logic: a statistical mechanical study of signal integration at the single-molecule level q-bio.MN · 2012 · author #2
  30. Signalling noise enhances chemotactic drift of E. coli q-bio.CB · 2012 · author #3
  31. Mutual Repression enhances the Steepness and Precision of Gene Expression Boundaries q-bio.MN · 2012 · author #3
  32. Reliability of frequency- and amplitude-decoding in gene regulation q-bio.SC · 2012 · author #3
  33. Rare switching events in non-stationary systems q-bio.MN · 2012 · author #2
  34. Non-Stationary Forward Flux Sampling q-bio.MN · 2012 · author #3
  35. Membrane clustering and the role of rebinding in biochemical signaling q-bio.MN · 2011 · author #4
  36. Multiplexing Biochemical Signals q-bio.MN · 2010 · author #3
  37. Robust circadian clocks from coupled protein modification and transcription-translation cycles q-bio.MN · 2010 · author #3
  38. Mutual information in time-varying biochemical systems q-bio.MN · 2010 · author #2
  39. The effect of feedback on the fidelity of information transmission of time-varying signals q-bio.MN · 2010 · author #3
  40. The role of spatial averaging in the precision of gene expression patterns q-bio.CB · 2009 · author #3
  41. Spatio-temporal correlations can drastically change the response of a MAPK pathway q-bio.MN · 2009 · author #3
  42. Computing stationary distributions in equilibrium and non-equilibrium systems with Forward Flux Sampling cond-mat.soft · 2009 · author #5
  43. Forward Flux Sampling for rare event simulations cond-mat.stat-mech · 2009 · author #3
  44. DNA looping provides stability and robustness to the bacteriophage lambda switch q-bio.MN · 2009 · author #2
  45. Mutual information between in- and output trajectories of biochemical networks q-bio.MN · 2009 · author #2
  46. The switching dynamics of the bacterial flagellar motor - Supporting Information q-bio.SC · 2008 · author #3
  47. The switching dynamics of the bacterial flagellar motor q-bio.SC · 2008 · author #3
  48. Homogeneous nucleation under shear in a two-dimensional Ising model: cluster growth, coalescence and breakup cond-mat.soft · 2008 · author #4
  49. Reaction Brownian Dynamics and the effect of spatial fluctuations on the gain of a push-pull network q-bio.QM · 2008 · author #2
  50. Chance and necessity in chromosomal gene distributions q-bio.GN · 2008 · author #2
  51. Regulatory control and the costs and benefits of biochemical noise q-bio.MN · 2007 · author #2
  52. Enzyme localization can drastically affect signal amplification in signal transduction pathways q-bio.MN · 2007 · author #2
  53. Fundamental Limits to Position Determination by Concentration Gradients q-bio.SC · 2007 · author #2
  54. An allosteric model for circadian KaiC phosphorylation - Supporting Information q-bio.MN · 2007 · author #4
  55. An allosteric model of KaiC phosphorylation q-bio.MN · 2007 · author #4
  56. Diffusion of transcription factors can drastically enhance the noise in gene expression q-bio.MN · 2006 · author #4
  57. Forward Flux Sampling-type schemes for simulating rare events: Efficiency analysis cond-mat.other · 2006 · author #3
  58. Exact results for noise power spectra in linear biochemical reaction networks q-bio.SC · 2005 · author #3
  59. Finding the center reliably: robust patterns of developmental gene expression q-bio.TO · 2005 · author #2
  60. Simulating rare events in equilibrium or non-equilibrium stochastic systems cond-mat.soft · 2005 · author #3
  61. Signal detection, modularity and the correlation between extrinsic and intrinsic noise in biochemical networks q-bio.MN · 2005 · author #3
  62. Chemical models of genetic toggle switches q-bio.MN · 2004 · author #2
  63. Sampling rare switching events in biochemical networks q-bio.MN · 2004 · author #3
  64. Green's Function Reaction Dynamics: a new approach to simulate biochemical networks at the particle level and in time and space q-bio.MN · 2004 · author #2
  65. Enhancement of the stability of genetic switches by overlapping upstream regulatory domains q-bio.MN · 2003 · author #2
  66. Hydrophobic interactions: an overview cond-mat.soft · 2002 · author #1
  67. Drying Induced Hydrophobic Polymer Collapse cond-mat.soft · 2002 · author #1

Mentions

  • 2505.13373 #4 · arxiv_oai · confidence 0.70 Pieter Rein ten Wolde
  • 1510.05850 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1505.06577 #1 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1503.00909 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1407.1499 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1407.0895 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1312.5625 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1311.4514 #1 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1309.3788 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1308.1449 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1302.6548 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1210.5113 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1210.0104 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1209.1912 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1208.5360 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1208.0162 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1202.1447 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1201.3824 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1201.3823 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1110.5660 #4 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1008.0576 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1004.2821 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1002.4273 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 1002.2595 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0907.4289 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0907.0581 #5 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0907.0514 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0906.4758 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0905.2329 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0901.0280 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0811.3184 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0811.2437 #3 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0805.3029 #4 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0804.4125 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0803.1261 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0711.3812 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0708.3599 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde
  • 0704.3639 #2 · backfill · confidence 0.70 Pieter Rein ten Wolde

Frequent Coauthors