PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.Nature methods, 16(6):509–518
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PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction
PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.