Bucket Masking improves protein fitness prediction by up to 14% over random masking by preferentially masking structurally coupled residue groups on four downstream tasks.
The language of proteins: NLP, machine learning and protein sequences.Computational and Structural Biotechnology Journal, 19:1750–1758
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Structure-Aware Masking for Protein Representation Learning
Bucket Masking improves protein fitness prediction by up to 14% over random masking by preferentially masking structurally coupled residue groups on four downstream tasks.